BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474978
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63720.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2093 0.0
> AT1G63720.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1);
Has 490 Blast hits to 394 proteins in 96 species:
Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 88;
Plants - 175; Viruses - 14; Other Eukaryotes - 79 (source: NCBI
BLink). | chr1:23635856-23637529 REVERSE LENGTH=1524
Length=1524
Score = 2093 bits (1133), Expect = 0.0
Identities = 1419/1548 (92%), Gaps = 55/1548 (4%)
Strand=Plus/Plus
Query 1 GGGTTACGTGTCGCTTTATTTGTAAATGGATTTTTCAGAGTTTGATTGTTGAAGAAG-TT 59
|||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||
Sbjct 17 GGGTTACGTGTCGCTTTATTTGTAAAACGATTTTTCAGATTTTGATTGTTAAAGAAGCTT 76
Query 60 T-TGTGT-CTATTATTGATTTTTACTTGAGAAAAACTCGAACGCTCTGtttttttttGTT 117
| ||||| |||| |||||||||||| |||||||||||||| |||||| |||||||
Sbjct 77 TCTGTGTATTATTTTTGATTTTTACTAGAGAAAAACTCGAATGCTCTG-----TTTTGTT 131
Query 118 TTCTCGAGAAAATTATCAGACTCAGAGAAAATTAAAAACACAGAAGAAAGATGAGAAGCG 177
||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 132 CTCTCGAGAAAATTCTCAGACTCAGAGAAAAGTAAAAACAGAGAAGAAAGATGAGAAGCG 191
Query 178 GTGCTAGTGGAAACAACGTTTTCGATACTATAAACGCAGCTGCTTCTGCTATTGCTTCCT 237
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 192 GTGCTAATGGAAACAACGTTTTCGATACTATAAACGCAGCTGCTTCTGCTATTGCTTCTT 251
Query 238 CTGATGATCGTCTTCATCAATCTTCTCCGATTCCGAAGAA-ACGAAAATGGTGGAATCGA 296
||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 252 CTGATGATCGTCTTCATCAATCTTCTCCGATTCATAAGAAGA-GAAAATGGTGGAATCGA 310
Query 297 TGGAGTCTGTTGAAATGTTTCAGATCTTCAAGACAAAGGAAACGAATAGGAAACTCGGTT 356
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 311 TGGAGTCTGTTGAAATGTTTCGGATCTTCAAGACAAAGAAAACGAATAGGAAACTCGGTT 370
Query 357 CTTGTTCCTGAACCGGTATCAA--T-ATCTTCAAATT---CAACATCAAATTTCGGTTAT 410
|||||||||||||||||||||| | |||||||||| |||||||||||| |||||||
Sbjct 371 CTTGTTCCTGAACCGGTATCAATGTCTTCTTCAAATTCAACAACATCAAATTCCGGTTAT 430
Query 411 CGTTCGGTTATCACAACACTTCCTTTTATAGCTCCACCTTCATCTCCAGCTTCATTTTTC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 CGTTCGGTTATCACAACACTTCCTTTTATAGCTCCACCTTCATCTCCAGCTTCATTTTTC 490
Query 471 CAATCAGAACCTCCTTCTGCTACACAATCACCTGTAGGAATCCTCTCTTTTAGTCCTTTG 530
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 491 CAATCAGAGCCACCTTCTGCTACACAATCACCTGTTGGAATCCTCTCTTTTAGTCCTTTG 550
Query 531 CCTTGTAATAACCGTCCTTCGATCTTCGCCATTGGACCTTACGCTCATGAAACTCAGTTA 590
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 551 CCTTGTAACAACCGTCCTTCCATCTTCGCCATTGGACCTTACGCTCATGAAACTCAATTG 610
Query 591 GTATCGCCTCCGGTTTTCTCTACTTACACTACTGAACCATCTTCAGCTCCAATCACACCT 650
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTATCTCCTCCGGTTTTCTCAACTTACACTACTGAACCATCTTCAGCTCCAATCACACCT 670
Query 651 CCTCTTGATGAATCATCTATCTACTTAACTACCACAACACCTTCTTCACCGGAAGTACCT 710
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 671 CCTCTTGATGACTCATCTATCTACTTAACCACCACAACACCTTCTTCACCTGAAGTGCCT 730
Query 711 TTTGCGCAGCTCTTTAACTCGAACCATCAAACCGGTAGCTATGGTCATAAGTTCCCAATG 770
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 731 TTTGCTCAGCTCTTTAACTCGAACCATCAAACCGGTAGCTATGGTTATAAGTTCCCAATG 790
Query 771 CCGTCTAGTTATGAGTTTCAGTTTTACCAACTTCCTCCTGGTAGTCCACTTGGTCAGCTT 830
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TCTTCTAGTTATGAGTTTCAGTTTTACCAACTTCCTCCTGGTAGTCCACTTGGTCAGCTT 850
Query 831 ATTTCCCCGAGCTCGGTTGTATCCGGTTCTGGTCCAACTTCTCCTTTTCCCGATGGAGAA 890
|||||||||||| | | | | ||||||||||||||||||||||||||||||||||
Sbjct 851 ATTTCCCCGAGCCC--T-G-----G-TTCTGGTCCAACTTCTCCTTTTCCCGATGGAGAA 901
Query 891 ACCGCGCTGTTCCCTCACTTTCAAGTCTCTGATCCTCCAAAGCTGTTGAGTCCTGGTAAA 950
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 902 ACCTCGCTGTTCCCTCACTTTCAAGTCTCTGATCCTCCAAAACTGTTGAGTCC----AAA 957
Query 951 TTGCAATGTCCAAAGACTGGTGTTACAACTCCTTCTAAAGAGCAGAAGATTGCGAGACCG 1010
| | || | ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 958 --G-ACTG-C-------TGGTGTTACAACTCCTTGTAAAGAGCAGAAGATTGTAAGACCG 1006
Query 1011 CATAAACCGGTTTCATTCGATCTTGACGCGGATCATGTCATTAGATGCGTGGATCAGAAG 1070
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1007 CATAAACCGGTTTCATTCGATCTTGATGCTGATCATGTCATTAGATGCGTGGATCAGAAG 1066
Query 1071 CTAAGAACAACGTTCCCTGAAGCATCATCAAATCCAGAATCAGTGAATCATTCGTCTCTC 1130
|||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 1067 CTAAGAACAACGTTCCCTGAAGCATCATCAGATCAAGAATCAATGAATCATTCGTCTCTC 1126
Query 1131 GGGTCGAATAAGGAATTCAATTTCGGCACGGATGAGAAACATTTGACCGTTGATGAACAT 1190
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GGGTCCAATAAGGAATTCAATTTCGGCACGGATGAGAAACATTTGACCGTTGATGAACAT 1186
Query 1191 AGAG-A--TTCGCCAAAGAATAGCAATGATTGGTCTTTCTTCCCTGTGATGCAGTCAGGT 1247
||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1187 AGATCAGCTTCGCCGAAGAACAGCAATGATTGGTCTTTTTTCCCTGTGATGCAGTCAGGT 1246
Query 1248 ACACTTAGCTAACCTTCACCAGAAGATTTAGTTATATAGAAATCTGAAATTTAGAAATCG 1307
||||| |||||||||||| ||||||| | | | ||||||||||||||||| ||||
Sbjct 1247 ACACTAAGCTAACCTTCATCAGAAGA---A-T-A----GAAATCTGAAATTTAGATATCG 1297
Query 1308 ATTCGGACAACGATCTTGTTCAAGATTCAAGAACGAAATATAGAATTTTTAGATGATTCT 1367
|||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1298 ATTCGGACAAATATCTTGTTCAAGATTCAAGAAC-AATTATAGAATTTTTAGATGATTCT 1356
Query 1368 GTTCAGGATCTTAGGGATATTATCTTGTCTCTCTTTT-GGTTTTGTAATAAATATTTGGC 1426
||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1357 GTTCAGGATCTTAAGGATATTTTCTTGTCTCTCTTTTTGGTTTTGTAATAAATATTTGGC 1416
Query 1427 ACCGTTGGTTGTTGTATATGACTTGTCTCTATGTAATTTTT-GATTTTGTGCATACACAT 1485
| |||| ||||||||||||| || ||| |||||| ||||| | ||||||| ||||||||
Sbjct 1417 ATCGTTAGTTGTTGTATATGGCTACTCTTTATGTAGTTTTTTGTTTTTGTGAATACACAT 1476
Query 1486 TTGACCGCATTTGTAAATAAAATTTAATTAGTTTCTTCAGAGAAATTC 1533
|||| ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1477 TTGATCGCATTTGTAAATAAAATTTAATCAGTTTCTTCGGAGAAATTC 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5