BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474978 Length=1533 Score E Sequences producing significant alignments: (Bits) Value AT1G63720.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2093 0.0 > AT1G63720.1 | Symbols: | BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins in 96 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 88; Plants - 175; Viruses - 14; Other Eukaryotes - 79 (source: NCBI BLink). | chr1:23635856-23637529 REVERSE LENGTH=1524 Length=1524 Score = 2093 bits (1133), Expect = 0.0 Identities = 1419/1548 (92%), Gaps = 55/1548 (4%) Strand=Plus/Plus Query 1 GGGTTACGTGTCGCTTTATTTGTAAATGGATTTTTCAGAGTTTGATTGTTGAAGAAG-TT 59 |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| || Sbjct 17 GGGTTACGTGTCGCTTTATTTGTAAAACGATTTTTCAGATTTTGATTGTTAAAGAAGCTT 76 Query 60 T-TGTGT-CTATTATTGATTTTTACTTGAGAAAAACTCGAACGCTCTGtttttttttGTT 117 | ||||| |||| |||||||||||| |||||||||||||| |||||| ||||||| Sbjct 77 TCTGTGTATTATTTTTGATTTTTACTAGAGAAAAACTCGAATGCTCTG-----TTTTGTT 131 Query 118 TTCTCGAGAAAATTATCAGACTCAGAGAAAATTAAAAACACAGAAGAAAGATGAGAAGCG 177 ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 132 CTCTCGAGAAAATTCTCAGACTCAGAGAAAAGTAAAAACAGAGAAGAAAGATGAGAAGCG 191 Query 178 GTGCTAGTGGAAACAACGTTTTCGATACTATAAACGCAGCTGCTTCTGCTATTGCTTCCT 237 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 192 GTGCTAATGGAAACAACGTTTTCGATACTATAAACGCAGCTGCTTCTGCTATTGCTTCTT 251 Query 238 CTGATGATCGTCTTCATCAATCTTCTCCGATTCCGAAGAA-ACGAAAATGGTGGAATCGA 296 ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| Sbjct 252 CTGATGATCGTCTTCATCAATCTTCTCCGATTCATAAGAAGA-GAAAATGGTGGAATCGA 310 Query 297 TGGAGTCTGTTGAAATGTTTCAGATCTTCAAGACAAAGGAAACGAATAGGAAACTCGGTT 356 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 311 TGGAGTCTGTTGAAATGTTTCGGATCTTCAAGACAAAGAAAACGAATAGGAAACTCGGTT 370 Query 357 CTTGTTCCTGAACCGGTATCAA--T-ATCTTCAAATT---CAACATCAAATTTCGGTTAT 410 |||||||||||||||||||||| | |||||||||| |||||||||||| ||||||| Sbjct 371 CTTGTTCCTGAACCGGTATCAATGTCTTCTTCAAATTCAACAACATCAAATTCCGGTTAT 430 Query 411 CGTTCGGTTATCACAACACTTCCTTTTATAGCTCCACCTTCATCTCCAGCTTCATTTTTC 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 CGTTCGGTTATCACAACACTTCCTTTTATAGCTCCACCTTCATCTCCAGCTTCATTTTTC 490 Query 471 CAATCAGAACCTCCTTCTGCTACACAATCACCTGTAGGAATCCTCTCTTTTAGTCCTTTG 530 |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 491 CAATCAGAGCCACCTTCTGCTACACAATCACCTGTTGGAATCCTCTCTTTTAGTCCTTTG 550 Query 531 CCTTGTAATAACCGTCCTTCGATCTTCGCCATTGGACCTTACGCTCATGAAACTCAGTTA 590 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 551 CCTTGTAACAACCGTCCTTCCATCTTCGCCATTGGACCTTACGCTCATGAAACTCAATTG 610 Query 591 GTATCGCCTCCGGTTTTCTCTACTTACACTACTGAACCATCTTCAGCTCCAATCACACCT 650 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 611 GTATCTCCTCCGGTTTTCTCAACTTACACTACTGAACCATCTTCAGCTCCAATCACACCT 670 Query 651 CCTCTTGATGAATCATCTATCTACTTAACTACCACAACACCTTCTTCACCGGAAGTACCT 710 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 671 CCTCTTGATGACTCATCTATCTACTTAACCACCACAACACCTTCTTCACCTGAAGTGCCT 730 Query 711 TTTGCGCAGCTCTTTAACTCGAACCATCAAACCGGTAGCTATGGTCATAAGTTCCCAATG 770 ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 731 TTTGCTCAGCTCTTTAACTCGAACCATCAAACCGGTAGCTATGGTTATAAGTTCCCAATG 790 Query 771 CCGTCTAGTTATGAGTTTCAGTTTTACCAACTTCCTCCTGGTAGTCCACTTGGTCAGCTT 830 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 TCTTCTAGTTATGAGTTTCAGTTTTACCAACTTCCTCCTGGTAGTCCACTTGGTCAGCTT 850 Query 831 ATTTCCCCGAGCTCGGTTGTATCCGGTTCTGGTCCAACTTCTCCTTTTCCCGATGGAGAA 890 |||||||||||| | | | | |||||||||||||||||||||||||||||||||| Sbjct 851 ATTTCCCCGAGCCC--T-G-----G-TTCTGGTCCAACTTCTCCTTTTCCCGATGGAGAA 901 Query 891 ACCGCGCTGTTCCCTCACTTTCAAGTCTCTGATCCTCCAAAGCTGTTGAGTCCTGGTAAA 950 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 902 ACCTCGCTGTTCCCTCACTTTCAAGTCTCTGATCCTCCAAAACTGTTGAGTCC----AAA 957 Query 951 TTGCAATGTCCAAAGACTGGTGTTACAACTCCTTCTAAAGAGCAGAAGATTGCGAGACCG 1010 | | || | ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 958 --G-ACTG-C-------TGGTGTTACAACTCCTTGTAAAGAGCAGAAGATTGTAAGACCG 1006 Query 1011 CATAAACCGGTTTCATTCGATCTTGACGCGGATCATGTCATTAGATGCGTGGATCAGAAG 1070 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1007 CATAAACCGGTTTCATTCGATCTTGATGCTGATCATGTCATTAGATGCGTGGATCAGAAG 1066 Query 1071 CTAAGAACAACGTTCCCTGAAGCATCATCAAATCCAGAATCAGTGAATCATTCGTCTCTC 1130 |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct 1067 CTAAGAACAACGTTCCCTGAAGCATCATCAGATCAAGAATCAATGAATCATTCGTCTCTC 1126 Query 1131 GGGTCGAATAAGGAATTCAATTTCGGCACGGATGAGAAACATTTGACCGTTGATGAACAT 1190 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1127 GGGTCCAATAAGGAATTCAATTTCGGCACGGATGAGAAACATTTGACCGTTGATGAACAT 1186 Query 1191 AGAG-A--TTCGCCAAAGAATAGCAATGATTGGTCTTTCTTCCCTGTGATGCAGTCAGGT 1247 ||| | |||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1187 AGATCAGCTTCGCCGAAGAACAGCAATGATTGGTCTTTTTTCCCTGTGATGCAGTCAGGT 1246 Query 1248 ACACTTAGCTAACCTTCACCAGAAGATTTAGTTATATAGAAATCTGAAATTTAGAAATCG 1307 ||||| |||||||||||| ||||||| | | | ||||||||||||||||| |||| Sbjct 1247 ACACTAAGCTAACCTTCATCAGAAGA---A-T-A----GAAATCTGAAATTTAGATATCG 1297 Query 1308 ATTCGGACAACGATCTTGTTCAAGATTCAAGAACGAAATATAGAATTTTTAGATGATTCT 1367 |||||||||| |||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1298 ATTCGGACAAATATCTTGTTCAAGATTCAAGAAC-AATTATAGAATTTTTAGATGATTCT 1356 Query 1368 GTTCAGGATCTTAGGGATATTATCTTGTCTCTCTTTT-GGTTTTGTAATAAATATTTGGC 1426 ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 1357 GTTCAGGATCTTAAGGATATTTTCTTGTCTCTCTTTTTGGTTTTGTAATAAATATTTGGC 1416 Query 1427 ACCGTTGGTTGTTGTATATGACTTGTCTCTATGTAATTTTT-GATTTTGTGCATACACAT 1485 | |||| ||||||||||||| || ||| |||||| ||||| | ||||||| |||||||| Sbjct 1417 ATCGTTAGTTGTTGTATATGGCTACTCTTTATGTAGTTTTTTGTTTTTGTGAATACACAT 1476 Query 1486 TTGACCGCATTTGTAAATAAAATTTAATTAGTTTCTTCAGAGAAATTC 1533 |||| ||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1477 TTGATCGCATTTGTAAATAAAATTTAATCAGTTTCTTCGGAGAAATTC 1524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75652221315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5