BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474980
Length=2979
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63700.1 | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase sup... 4920 0.0
AT1G53570.1 | Symbols: MAP3KA, MAPKKK3 | mitogen-activated prot... 167 6e-40
> AT1G63700.1 | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase superfamily
protein | chr1:23624666-23629112 REVERSE LENGTH=3275
Length=3275
Score = 4920 bits (2664), Expect = 0.0
Identities = 2878/2983 (96%), Gaps = 8/2983 (0%)
Strand=Plus/Plus
Query 1 TTTGAAAGAGTGATA--GT--GTGAGTGTGCCTCTTGGGTTGTGGGGAAGAAGATCATGC 56
||| ||||||||||| || ||||||||||||||||| |||| ||||||||||||||||
Sbjct 27 TTTAAAAGAGTGATAGTGTGAGTGAGTGTGCCTCTTGGTTTGT-GGGAAGAAGATCATGC 85
Query 57 CTTGGTGGAGTAAATCCAAAGATGaaaaaaaGAAAACTAATAAGGAGAGTATCATTGATG 116
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 CTTGGTGGAGTAAATCAAAAGATGAAAAAAAGAAAACTAATAAGGAGAGTATCATTGATG 145
Query 117 CCTTTAACCGGAAATTGGGATTTGCATCTGAGGATAGGTCTAGTGGTCGGTCGAGAAAAT 176
| ||||| |||||| ||||||| ||||||||||||||||||||||| | || |||||||
Sbjct 146 CGTTTAATCGGAAACTGGGATTCGCATCTGAGGATAGGTCTAGTGGAAGATCAAGAAAAT 205
Query 177 CAAGAAGACGACGTGATGAAATTGTGTCAGAAAGAGGAGCTATATCTCGATTACCATCAA 236
||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 206 CAAGACGACGACGTGATGAGATTGTGTCTGAAAGAGGAGCTATATCTCGATTACCATCAA 265
Query 237 GATCTCCCTCTCCTTCTACTCGGGTTTCACGCTGTCAGAGTTTTGCAGAAAGATCTCCTG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 GATCTCCCTCTCCTTCTACTCGGGTTTCACGCTGTCAGAGTTTTGCAGAAAGATCTCCTG 325
Query 297 CTGTACCTCTTCCTCGTCCTATTGTCCGTCCTCCTGTAACCAGTACTGATTCGGGAATGA 356
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 326 CTGTACCTCTTCCTCGTCCTATTGTCCGTCCTCATGTAACCAGTACTGATTCAGGAATGA 385
Query 357 ATGGATCACAGAGACCAGGTTTAGATGCTAATTTGAAGCCATCATGGTTGCCACTTCCAA 416
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 386 ATGGATCACAGAGACCAGGTTTAGATGCAAATTTGAAGCCGTCATGGTTGCCACTTCCAA 445
Query 417 AGCCCCATGGTGCTCCAAGCATACCTGATAATACTGGTGCTGAGGCTGATTTTGCCACTG 476
|||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 446 AGCCCCATGGTGCTACAAGCATACCTGATAATACCGGTGCTGAGCCTGATTTTGCCACTG 505
Query 477 CTTCTGTGTCTAGTGGAAGTTCTGTCGGTGACAATCCATCTGATTCTCTTCTCAGTCCAT 536
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 506 CTTCTGTGTCTAGTGGAAGTTCTGTGGGTGACATTCCATCTGATTCTCTTCTCAGTCCAT 565
Query 537 TGGCTTCTGATTGTGAAAATGGGAACCGAACAGCAGTAAACATTTCTTCAAGGGATCAAC 596
|||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct 566 TGGCGTCTGATTGTGAAAATGGGAACCGAACACCAGTAAACATATCTTCGAGGGATCAGT 625
Query 597 CAATGCATAGTAATAAAAACTCAGCTGAGATGTTCAAGCCAGTCCCAAATAAAAATAGGA 656
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 626 CAATGCATAGTAACAAAAACTCAGCTGAGATGTTTAAGCCAGTCCCTAATAAAAATAGGA 685
Query 657 TTCTATCGGCATCTCCTAGGCGAAGACCTCTGGGAACTCATGTGAAGAATTTACAAATCC 716
|||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 686 TTCTGTCTGCATCTCCTAGGCGGAGACCTCTGGGAACTCATGTGAAGAATCTACAAATCC 745
Query 717 CGCAACGAGATTTAGTGCTATGCAGTGCTCCAGAGAGTTTGTTGTCTAGTCCTTCCAGGA 776
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 746 CCCAACGAGATTTAGTGCTATGCAGTGCTCCAGATAGTTTGTTGTCTAGTCCTTCCAGGA 805
Query 777 GTCCAATGAGATCCTTTGTTCCAGATCAAGTCTCGAACCATGGGTTGTTGATTAGTAAAC 836
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 806 GTCCAATGAGATCCTTTATTCCAGATCAAGTCTCAAACCATGGGTTGTTGATTAGTAAAC 865
Query 837 CATATTCAGATGTTTCCTTACTTGGATCTGGACAGTGCTCAAGCCCAGGTTCAGGTTACA 896
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 866 CATATTCAGATGTTTCCTTGCTTGGATCTGGACAGTGCTCAAGCCCCGGTTCAGGTTACA 925
Query 897 ACTCAGGTAACAATTCCATTGGTGGAGATATGGCTACCCAGCTGTTTTGGCCTCAGAGCA 956
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 926 ACTCAGGTAACAATTCCATTGGTGGAGATATGGCTACTCAGCTGTTTTGGCCTCAAAGCA 985
Query 957 GGTGTAGCCCTGAATGTTCCCCTGTGCCTAGTCCAAGAATGACAAGCCCTGGTCCTAGCT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GGTGTAGCCCTGAATGTTCCCCTGTGCCTAGTCCAAGAATGACAAGCCCTGGTCCTAGCT 1045
Query 1017 CTAGAATACAGAGTGGTGCTGTTACACCTCTTCATCCTCGAGCTGGAGGGTCAACTACTG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 CTAGAATACAGAGTGGTGCTGTTACACCTCTTCATCCTCGAGCTGGAGGGTCAACTACTG 1105
Query 1077 GGTCTCCTACTAGAAGACTTGATGATAACAGACAGCAAAGCCACCGTCTGCCTCTCCCCC 1136
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1106 GGTCTCCTACTAGAAGACTTGATGATAACAGACAGCAAAGCCATCGTCTGCCTCTCCCGC 1165
Query 1137 CATTATTAATCTCTAATACTTGTCCGTTTTCCCCCACATATTCAGCAGCAACATCTCCAT 1196
| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1166 CGTTATTAATCTCTAATACTTGTCCGTTTTCACCCACATATTCAGCAGCGACATCTCCGT 1225
Query 1197 CTGTCCCCCGAAGTCCAGCAAGGGCAGAGGCTACCGTAAGCCCTGGATCGCGATGGAAAA 1256
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1226 CTGTCCCCCGAAGTCCGGCAAGGGCAGAGGCTACGGTTAGCCCTGGATCGCGATGGAAAA 1285
Query 1257 AAGGGAGATTGCTGGGGATGGGCAGTTTTGGACATGTGTATCTTGGCTTTAACAGCGAAA 1316
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1286 AAGGGAGATTGCTGGGGATGGGAAGTTTTGGACATGTGTATCTTGGCTTTAACAGTGAAA 1345
Query 1317 GTGGTGAGATGTGTGCCATGAAAGAGGTTACTCTATGCTCAGATGATCCTAAGTCAAGGG 1376
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 GTGGGGAGATGTGTGCCATGAAAGAGGTTACTCTATGCTCAGATGATCCTAAGTCAAGGG 1405
Query 1377 AGAGTGCACAACAATTGGGGCAAGAAATTTCTGTTCTAAGCCGTTTACGACACCAAAATA 1436
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1406 AGAGTGCACAACAATTGGGGCAAGAAATTTCAGTTCTAAGCCGTTTACGACACCAAAATA 1465
Query 1437 TAGTGCAGTATTATGGCTCTGAAACCGTAGATGACAAGCTGTATATATATCTGGAGTATG 1496
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1466 TAGTGCAGTATTATGGCTCTGAAACCGTCGATGACAAGCTGTATATATATCTGGAGTATG 1525
Query 1497 TCTCCGGTGGTTCGATATATAAACTTCTTCAAGAGTATGGACAATTTGGTGAGAATGCCA 1556
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 TCTCCGGTGGTTCGATCTATAAACTTCTTCAAGAGTATGGACAATTTGGTGAGAATGCCA 1585
Query 1557 TCCGAAACTACACGCAGCAAATTTTATCAGGGCTCGCATATTTGCACGCCAAAAATACTG 1616
| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TTCGTAACTACACACAACAAATTTTATCAGGGCTCGCATATTTGCACGCCAAAAATACTG 1645
Query 1617 TTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCCCATGGACGAGTAAAAGTGG 1676
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1646 TTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCTCATGGACGAGTAAAAGTTG 1705
Query 1677 CTGATTTTGGGATGGCAAAACATATTACTGCTCAATCTGGTCCTCTATCATTCAAGGGGA 1736
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1706 CTGATTTTGGGATGGCAAAACATATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGA 1765
Query 1737 GCCCATATTGGATGGCACCTGAGGTGATAAAGAATTCAAATGGCAGTAACCTTGCGGTTG 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1766 GCCCATATTGGATGGCACCTGAGGTGATAAAGAATTCAAATGGCAGTAACCTTGCGGTCG 1825
Query 1797 ACATATGGAGTCTTGGATGTACCGTTCTAGAAATGGCTACAACAAAACCTCCATGGAGCC 1856
|||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 1826 ACATATGGAGTCTTGGATGTACTGTTTTAGAAATGGCTACAACGAAACCTCCATGGAGCC 1885
Query 1857 AGTATGAGGGGGTTCCTGCTATGTTCAAGATTGGAAACAGCAAGGAGCTTCCAGATATTC 1916
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1886 AGTATGAAGGGGTTCCTGCTATGTTCAAGATTGGAAACAGCAAGGAGCTTCCAGATATCC 1945
Query 1917 CTGATCATTTATCTGAAGAGGGGAAGGATTTTGTAAGAAAATGCCTACAGAGAAACCCTT 1976
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1946 CTGATCATTTATCTGAAGAGGGGAAGGATTTTGTAAGAAAATGCCTACAAAGAAACCCCG 2005
Query 1977 CAAATCGTCCTACAGCTGCTCAGCTTTTGGATCACGCTTTTGTAAGAAATGTGATGCCGA 2036
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2006 CAAATCGTCCTACAGCTGCTCAGCTTTTGGATCATGCTTTTGTAAGAAATGTGATGCCGA 2065
Query 2037 TGGAAAGGCCTATTGTGTGTGGCGAGCCTGCAGAAGCCATGAATGTAGCTTCGAGCACCA 2096
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2066 TGGAAAGGCCTATTGTGAGTGGCGAGCCTGCAGAAGCCATGAATGTAGCTTCGAGCACCA 2125
Query 2097 TGAGATCACTGGACATTGGACATGCAAGGAGTCTTCCGTGCTTAGACTCGGAAGATGCAA 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 TGAGATCACTGGACATTGGACATGCAAGGAGTCTTCCGTGCTTAGACTCGGAAGATGCAA 2185
Query 2157 CCAGTTACCAGCAGAAAGGATTAAAACCTGGCTCGGGATTCAGTATATCCCAATCTCCTA 2216
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2186 CCAATTACCAGCAGAAAGGATTAAAACATGGCTCGGGATTCAGTATATCCCAATCTCCTA 2245
Query 2217 GGAACATGTCATGCCCGATTTCACCAGTCGGTAGTCCAATCTTTCACTCGCATTCACCAC 2276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2246 GGAACATGTCATGCCCGATTTCACCAGTCGGTAGTCCAATCTTTCACTCGCATTCACCAC 2305
Query 2277 ATATTAGCGGAAGAAGATCTCCATCCCCAATATCTAGTCCCCATGCTCTCTCCGGTTCAT 2336
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2306 ACATTAGCGGAAGAAGATCTCCATCCCCAATATCTAGTCCCCACGCTCTCTCTGGTTCAT 2365
Query 2337 CAACACCTTTAACCGGGTGTGGTGGAGCCATCCCGTTCCATCACCAAAGACAGACTACAG 2396
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2366 CAACACCTTTAACTGGGTGTGGTGGAGCCATCCCGTTCCATCACCAAAGACAAACTACAG 2425
Query 2397 TTAACTTCTTGCATGAAGGCATAGGATCAAGCAGAAGCCCGGGAAGTGGCGGAAATTTCT 2456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2426 TTAACTTCTTGCATGAAGGCATAGGATCAAGCAGAAGCCCGGGAAGTGGCGGAAATTTCT 2485
Query 2457 ACACCAACAGTTTCTTTCAGGAGCCTAGTAGGCAGCAAGATCGGTCGCGGAGTAGTCCAA 2516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2486 ACACCAACAGTTTCTTTCAGGAGCCTAGTAGGCAGCAAGATCGGTCGCGGAGTAGTCCAA 2545
Query 2517 GGACGCCTCCTCATGTATTTTGGGACAACAACGGATCGATCCAGCCAGGCTATAATTGGA 2576
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2546 GGACTCCTCCTCATGTATTTTGGGACAACAACGGATCGATCCAGCCAGGCTATAATTGGA 2605
Query 2577 ACAAGGACAACCAGCCAGTCCTATCTGATCATGTGTCCCAACAGCTCTTAAGTGAGCATC 2636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2606 ACAAGGACAACCAGCCAGTCCTATCTGATCATGTGTCCCAACAGCTCTTAAGTGAGCATC 2665
Query 2637 TGAAACTGAAGTCCCTCGACCTGAGACCCGGTTTTTCAACTCCCGGTTCGACAAACAGAG 2696
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2666 TGAAACTGAAGTCCCTCGACCTGAGACCCGGTTTTTCAACTCCCGGATCAACAAACAGAG 2725
Query 2697 GACCCTAACCCGGTCGAGTCAAATGATTCGACACCAATGACAGAACCATAAAACCCAGTG 2756
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2726 GACCCTAACCCGTTCGAGTCAAATGATTCGACACCAATGACAGAACCATAAAACCCAGTG 2785
Query 2757 GAAACAAACATCAAAACAAATAGCTGCAGAAACTCCTCCAGGATCTCAGAATTGCAACAC 2816
|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2786 GAAAAAAACATCAAAACAAGTAGCTGCAGAAACTCCTCCAGGATCTCGGAATTGCAACAC 2845
Query 2817 AGCCTGAAGGGTTCAGGATCTCGAGGTTTAGGATCGGGGTTAGGGTTACTGAGCCGCGTC 2876
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2846 AGCCTGAAGGGT-CAGGATCTTGAGGTTTAGGATCGGGGTTAGGGTTACTGAGCCGCGTC 2904
Query 2877 TCAAAACCCTGAACCATTGGCTAATATCAAGAAATGAGGATTCGttttttttCGTCTTTG 2936
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 2905 TCAAAACCCTGAACCATTGGCTAATATCATGAA-TGAGGATTCGTTTTTTT-CGTCTTTG 2962
Query 2937 GAAAATCTGAAGAGCTCTTTATCTCGTCTCTCTCTGTTTCTCT 2979
|||||||||||||||||||| ||| |||||||||| ||| |||
Sbjct 2963 GAAAATCTGAAGAGCTCTTTGTCTTGTCTCTCTCTCTTTTTCT 3005
> AT1G53570.1 | Symbols: MAP3KA, MAPKKK3 | mitogen-activated protein
kinase kinase kinase 3 | chr1:19987191-19991113 FORWARD
LENGTH=2410
Length=2410
Score = 167 bits (90), Expect = 6e-40
Identities = 354/478 (74%), Gaps = 32/478 (7%)
Strand=Plus/Plus
Query 1556 ATCCGAAACTACACGCAGCAAATT-TTATCAGGGCTCGCATATTTGCA-CGCCAAAAATA 1613
|||| ||||||||||| ||| ||| || | ||||| || ||||| || | | |||||
Sbjct 1146 ATCCAAAACTACACGCGGCAGATTCTT-GCTGGGCTTGCCTATTTACATGGAC-GAAATA 1203
Query 1614 CTGTTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCCCATGGACGAG-TAAAA 1672
| || ||||||||||||||||||||||||||||| |||||||| |||| || | ||
Sbjct 1204 CAGTACATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGT-GAAATCAA- 1261
Query 1673 GT-GGCTGATTTTGGGATGGCAAAACATATTACTGCTCAAT-CTGGTCCT-CTATCATTC 1729
|| ||| || ||||||||||| |||||| | || || | | || | | || || ||
Sbjct 1262 GTTGGCAGACTTTGGGATGGCCAAACATGTAACAGC-CTTTTCTACTA-TGCTTTCTTTT 1319
Query 1730 AAGGGGAGCCCATATTGGATGGCACCTGAGGT-GATAAAGAATTCAAA-TGGCAGTA-AC 1786
|| ||||| || || ||||||||||| ||||| | | | || |||| |||| || ||
Sbjct 1320 AAAGGGAGTCCTTACTGGATGGCACCCGAGGTTG-TGATGAGC-CAAAATGGC--TACAC 1375
Query 1787 -CTTGCGGTTGACATATGGAGTCTTGGAT-GTACCGTTCTAGAAATGGCTACAACAAAAC 1844
| ||| || || || |||||| |||| | |||| |||| |||||||| ||| |||| |
Sbjct 1376 TCATGCAGTCGATATCTGGAGT-TTGGGTTGTACTATTCTGGAAATGGCAACATCAAAGC 1434
Query 1845 CTCCATGGAGCCAGTATGAGGGGGTTCCTGCTATGTTCAAGATTGGAAACAGCAAGGAGC 1904
| || |||||||||| ||| |||||| |||| || ||||| || |||||||| || || |
Sbjct 1435 CACCTTGGAGCCAGTTTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGA-C 1493
Query 1905 TTCCAG-ATATTCCTGATCAT-TTATCTGAA-GAGGGGAAGGATTTTGTAAGAAAATGCC 1961
|| | | || |||||||| || || || || | ||| ||||| |||| || |
Sbjct 1494 ACCCCGGAAATACCTGATCACCTT-TCA-AATGATGCAAAGAATTTTATAAGGCTTTGTC 1551
Query 1962 TACAGA-GAAACCCTTCAA-ATCGTCCTACAGCTGCTCAGCTTTTGGATCACGCTTTT 2017
| || | |||| || || | |||||||||||| |||||||| | || ||| |||||
Sbjct 1552 TGCA-ACGAAATCCGACAGTA-CGTCCTACAGCTTCTCAGCTTCTAGAACACCCTTTT 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148092815736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5