BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474982
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63690.2 | Symbols: ATSPPL2, SPPL2 | SIGNAL PEPTIDE PEPTIDAS... 3260 0.0
> AT1G63690.2 | Symbols: ATSPPL2, SPPL2 | SIGNAL PEPTIDE PEPTIDASE-LIKE
2 | chr1:23618378-23622396 FORWARD LENGTH=2049
Length=2049
Score = 3260 bits (1765), Expect = 0.0
Identities = 1943/2024 (96%), Gaps = 32/2024 (2%)
Strand=Plus/Plus
Query 1 TCTATTCCGTGTTTCActcttctctctctctctctcgcttctctTCATTGTTTCTGTGTG 60
||| |||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 21 TCTCTTCCGTGTTTCA--C-TCT-TCTCTCTCTCTCGCTTCTCTTCATTGTTTGTGTGTG 76
Query 61 ATTATAGCGAAGAAGAGAGAATCCTTGGAGCATTTCCATGGATTCGCTTCGATTTCTCCG 120
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 77 ATTACAGCGAAGAAGAGAGAATCCTTGGAGCA-TTCCATGGATTCGCTTCGATTTCTCCG 135
Query 121 GATTCTTCTTCTATCATCTTCGATTTTACTCTTATCTCTCCGTTCTACAGTCACCGCCGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GATTCTTCTTCTATCATCTTCGATTTTACTCTTATCTCTCCGTTCTACAGTCACCGCCGG 195
Query 181 TGATATTGTTCATCAAGACAATTTAGCTCCGAAGAAACCAGGTTGCGAGAATGACTTCGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TGATATTGTTCATCAAGACAATTTAGCTCCGAAGAAACCAGGTTGCGAGAATGACTTCGT 255
Query 241 TTTGGTGAAAGTTCAAACGTGGATTGATGGTGTTGAGAATGAGGAGTTTGTGGGGGTTGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TTTGGTGAAAGTTCAAACGTGGATTGATGGTGTTGAGAATGAGGAGTTTGTGGGGGTTGG 315
Query 301 GGCTAGATTTGGGAGGCGGATAGTTTCCAAGGAGAAGAACGCAAACCAGACTCACCTTGT 360
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 316 CGCTAGATTTGGGAAGCGGATAGTTTCCAAGGAGAAGAATGCAAACCAGACTCACCTTGT 375
Query 361 TTTTGCTAATCCTCGTGATTCTTGTACACCGCTCAAGAACAAGCTTTCTGGAGATGTTGT 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TTTTGCAAATCCTCGTGATTCTTGTACACCGCTCAAGAACAAGCTTTCTGGAGATGTTGT 435
Query 421 TATTGTGGAACGTGGCAACTGTCGGTTCACAGCAAAGGCGAATAATGCAGAAGCTGCTGG 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TATTGTGGAACGGGGCAACTGTCGGTTCACAGCAAAGGCGAATAATGCAGAAGCTGCTGG 495
Query 481 TGCCTCTGCTCTGCTCATCATCAATAATCAGAAAGAACTTTACAAAATGGTTTGTGAACC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TGCCTCTGCTCTGCTCATCATCAATAATCAGAAAGAACTTTACAAAATGGTTTGTGAACC 555
Query 541 GGATGAAACGGATTTAGATATACAGATTCCTGCCGTCATGCTCCCTCAAGATGCTGGTGC 600
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 556 GGATGAAACTGATTTAGATATACAGATTCCTGCCGTCATGCTCCCGCAAGATGCTGGTGC 615
Query 601 ATCCTTGCAAAAGATGCTAGCCAACAGTTCAAAAGTGTCGGCGCAGCTTTACTCCCCAAG 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 616 ATCCTTGCAAAAGATGCTAGCCAACAGTTCTAAAGTGTCGGCGCAGCTTTACTCCCCAAG 675
Query 661 ACGACCAGCTGTTGACGTAGCTGAAGTCTTTTTGTGGTTAATGGCTATTGGTACCATTTT 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 676 ACGACCAGCTGTTGACGTAGCTGAAGTCTTTTTGTGGTTAATGGCAATTGGTACCATTTT 735
Query 721 GTGTGCATCTTATTGGTCTGCATGGAGTGCCCGAGAGGCAGCTATTGAACATGATAAGCT 780
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 736 ATGTGCATCTTATTGGTCTGCATGGAGTGCCCGAGAAGCAGCTATTGAACATGATAAGCT 795
Query 781 ACTGAAGGATGCAATAGATGAAATCCCTTACACAAATGATGGGGGCAGTGGTGTTGTAGA 840
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 796 ACTGAAGGATGCTATAGATGAAATCCCTAACACAAATGATGGGGGTAGTGGTGTTGTAGA 855
Query 841 GATCAATACTATTTCAGCTAtttttttCGTAGTTCTTGCTTCGGGATTCCTGGTGATTCT 900
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GATCAATTCTATTTCAGCTATTTTTTTCGTAGTTCTTGCTTCGGGATTCCTGGTGATTCT 915
Query 901 TTACAAGCTTATGTCTTATTGGTTTGTGGAGCTTCTTGTGGTTGTTTTCTGCATTGGTGG 960
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 916 TTACAAGCTTATGTCTTATTGGTTTGTGGAGCTTCTTGTGGTCGTTTTCTGCATTGGTGG 975
Query 961 TGTTGAGGGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAGATGGTTCCAACGTGCTGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TGTTGAGGGTTTGCAAACTTGCCTCGTCGCGTTACTATCAAGATGGTTCCAACGTGCTGC 1035
Query 1021 AGATGCTTATGTAAAAGTCCCTTTCCTTGGACCTATCTCTTACCTGACTCTTGCAGTTTC 1080
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1036 AGATACTTATGTAAAAGTCCCTTTCCTTGGACCTATCTCTTACCTCACTCTTGCAGTTTC 1095
Query 1081 TCCTTTCTGCATTGTCTTTGCTGTTCTCTGGGCTGTTTACCGAGTTCACTCCTTTGCTTG 1140
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1096 TCCTTTCTGCATTGTCTTTGCTGTTCTATGGGCTGTATACCGAGTTCACTCCTTTGCTTG 1155
Query 1141 GATTGGCCAAGATGTTCTTGGTATCGCATTGATCATCACTGTACTACAGATTGTTCATGT 1200
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1156 GATTGGCCAAGATGTTCTTGGTATCGCATTGATCATAACTGTACTACAGATTGTTCATGT 1215
Query 1201 CCCAAATCTTAAGGTCGGGACAGTTCTTCTCAGCTGTGCCTTCTTGTACGATATCTTCTG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 CCCAAATCTTAAGGTCGGGACAGTTCTTCTCAGCTGTGCCTTCTTGTACGATATCTTCTG 1275
Query 1261 GGTGTTTGTCTCCAAGAAGTTGTTCCACGAAAGCGTAATGATTGTCGTAGCTCGTGGTGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1276 GGTGTTTGTCTCCAAGAAGTTGTTCCACGAAAGCGTAATGATTGTCGTAACTCGAGGTGA 1335
Query 1321 TAAGAGTGGAGAAGATGGCATCCCGATGCTACTGAAGATTCCGCGCATGTTTGATCCGTG 1380
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1336 TAAGAGTGGAGAAGATGGCATCCCGATGCTACTGAAGATTCCGCGGATGTTCGATCCGTG 1395
Query 1381 GGGAGGCTACAGCATTATTGGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 GGGAGGCTACAGCATTATTGGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATT 1455
Query 1441 TGCTCTCAGATATGACTGGTTAGCTAACAAGACTCTTAGAACCGGCTATTTTATATGGGC 1500
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 TGCTCTCAGATATGACTGGCTAGCTAACAAGACTCTTAGAACCGGCTATTTTATATGGGC 1515
Query 1501 AATGGTTGCCTACGGATTAGGTCTTTTACTTACTTACGTGGCTTTAAACCTAATGGATGG 1560
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1516 AATGGTTGCCTATGGATTAGGTCTTTTAATTACTTACGTGGCTTTGAACCTAATGGATGG 1575
Query 1561 ACACGGCCAACCAGCATTGCTCTACATTGTCCCTTTCACTCTTGGAACAATGTTAACGCT 1620
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1576 ACACGGCCAACCAGCATTGCTATACATTGTCCCTTTCACACTTGGAACCATGTTAACGCT 1635
Query 1621 GGCTCGAAAACGAGGCGATCTTTGGATTCTATGGACAAAAGGAGAACCAGAAAGGGCTTG 1680
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1636 GGCTCGAAAAAGAGACGATCTTTGGATTCTATGGACCAAAGGAGAACCAGAAAGAGCTTG 1695
Query 1681 TCCTCACCATGTCCGGCTTGAACCGTGTTCTGAGAAATGAGACGACCTGACCAAAAAATG 1740
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1696 TCCTCACCATGTCCGGCTTGAACAGTGTTCTGAGAAATGAGACGACCTGACCAAAAAATG 1755
Query 1741 GAACACTGAGATATTTACAGAGaaaaaaaa-------T--G----T---AACGTAAGCTG 1784
||||||||||||||||||||||||||||| | | | |||||||| ||
Sbjct 1756 CAACACTGAGATATTTACAGAGAAAAAAAAAAAAGGCTTTGGGGGTTGTAACGTAAGTTG 1815
Query 1785 TAAGATTAATTTTCTCTTCAAATTCCTTTTT--AATCTTATGTTATTTATGTTACTTACT 1842
||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||
Sbjct 1816 TAAGATTAATTTTCTCTTCAAAT-CCTTTTTTTAATCTTAAGTTGTTTATGTTACTTACT 1874
Query 1843 TACACCATCATTATTGAAGAAGAATCCATGATCGT--T-CTCTGTCTATATATAATTTGT 1899
|||| |||||||||||||||||||||||||||||| | || ||||||||||| |||||
Sbjct 1875 TACATCATCATTATTGAAGAAGAATCCATGATCGTCGTTCTTTGTCTATATATGGTTTGT 1934
Query 1900 TTCTTTTGTAAAAAAGTGTTAAATGTGTATAAA-CGTAGACAACTTTCTAAGCTCTCATA 1958
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1935 TTCTTTTGTAAGAAAGTGTTAAATGTGTATAAAACGTAGACAACTTTCTAAGCTCTCATA 1994
Query 1959 ATT----GTGTGGACGATTTTGTAATTTAAATAATAATATATAT 1998
||| |||||||||||||||||||||||||||||||||||||
Sbjct 1995 ATTAATTGTGTGGACGATTTTGTAATTTAAATAATAATATATAT 2038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98995474740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5