BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474984
Length=2459
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63670.1 | Symbols: | Protein of unknown function (DUF3741)... 3459 0.0
> AT1G63670.1 | Symbols: | Protein of unknown function (DUF3741)
| chr1:23607422-23610244 REVERSE LENGTH=2270
Length=2270
Score = 3459 bits (1873), Expect = 0.0
Identities = 2138/2264 (94%), Gaps = 26/2264 (1%)
Strand=Plus/Plus
Query 204 GGTCTTTGAGAAACGATTTTACTAAATTGGAGACGAGAGTTTTGAATGATTGGTGAATTT 263
|||||||||||| || |||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 25 GGTCTTTGAGAATCGGTTTTACTAGATTGAAGACGAGAGTTTTGAATGATTGGTGAA--T 82
Query 264 GTTGTTGATCATCAATGGAGAAGAAGCGATCACCGAGAAGTAGCAAGAGTCCTGGACCTG 323
||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 83 -TTGTTGATCATCAATGGAGAAGAAGAGATCACCAAGAAGTAGTAAGAGTCCTGGACCTG 141
Query 324 CAATTTTCCCTAAAAGCCCTCTTGTCTACGAGAATTATAAGTCTGGTTGTGGTTGGAAAC 383
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 142 CAATTTTCCCTAAAAGCCCTCTTGTCTACGAGAGTTATAAGTCTGGTTGTGGTTGGAAAT 201
Query 384 TGATAAAGTTCTTCGATTTCGGTCATGTCAAATCTGGTAATAAGAGACTTGGTTCAGAGA 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TGATAAAGTTCTTCGATTTCGGTCATGTCAAATCTGGTAATAAGAGACTTGGTTCAGAGA 261
Query 444 AGAAGAAATTCATCAGAGATTCTGCTGGTAATGTTTATACTAAAAGCCAGCTTGATTTGC 503
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 262 AGAAGAAATTCGTCAGAGATTCTGCTGGTAATGTTTATACTAAAAGTCAGCTTGATTTGC 321
Query 504 TTAAGAAGCTTCATGAGAAGTGTCAGTGTAATGATCGGATTGTGGAAGAAGAGAGTTCAT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 322 TTAAGAAGCTTCATGAGAAGTGTCAGTGTAATGATCGGATTGTGGAAGAAGAGAGATCAT 381
Query 564 GTAAACCTAAAACAAGGAGAAGATCTTTGAGTTCTGAAAGAGAACTTGAGAAGTATGAAT 623
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 382 GTAAGCCTAAAACAAGGAGAAGATCTTTGAGTTCTGATAGAGAACTTGAGAAGTATGAAT 441
Query 624 CTAAACCTGTTCAGGGATTGCTAGAGAGAGAGATAAGAAGGATCAAGAATCTAAAGGAGG 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 442 CTAAACCTGTTCAGGGATTGCTAGAGAGAGAGATAAGAAGGATCAAGAATCTAAAGGATG 501
Query 684 AAACTTGCGATGACCCTGATAAGCAAAAGCAATCTTCTTTGAGTGAAATTGAGAAGACAA 743
||||||| |||| ||| ||||| |||||||||||||| |||||||||||| | || |
Sbjct 502 AAACTTGTGATGTCCCGGATAAACAAAAGCAATCTTCGTTGAGTGAAATT--G-AG---A 555
Query 744 ATGATAAGT-ATAATCAAATAGATCTGAAGAGTGGGAGAGATTGTAAGAAGAGTGCAGAG 802
||||| ||| |||| || || ||| |||||| |||||||||||||||||||||| |||||
Sbjct 556 ATGAT-AGTGATAAGCAGATGGATATGAAGAATGGGAGAGATTGTAAGAAGAGTTCAGAG 614
Query 803 ATTAACCTTCAAGCTTGTGTGAATGAAGCTGCTGAAACATTTATTTGTTCCAAGGCGGAG 862
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 615 ATTAACCTTCAAGCTTGTGTGAATGAAGCTGCTGAAACCTTTATCTGTTCAAAGGCAGAA 674
Query 863 GAGAAGGGGAAAGATCGGTCTAAGCAGTTCATGGAGGCGTTAGATATTCTAAGTTCGAAC 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GAGAAGGGGAAAGATCGGTCTAAGCAGTTCATGGAGGCGTTAGATATTCTAAGTTCGAAC 734
Query 923 AAAGAATTGTTCATTACACTCTTACAAGATCCTAATTCA--TTC-TCG-AAAAAAGGTCA 978
||||||||||||||||||||||||||||||||| ||||| ||| || ||||||| |
Sbjct 735 AAAGAATTGTTCATTACACTCTTACAAGATCCTCATTCATTTTCGGCGAAAAAAAGCT-T 793
Query 979 AGACTTGGAAGGATGTAAGGTAAAGGAACCGCGGGATAACTCTCCATCAAGGGCTGATGA 1038
||||||||| |||| ||||||||| |||||||| ||||| |||||||||| |||||||||
Sbjct 794 AGACTTGGAGGGATCTAAGGTAAAAGAACCGCGTGATAAATCTCCATCAATGGCTGATGA 853
Query 1039 TTTGGATAACATTGTTCTCTTGAAGCCTAGATTATCAAGTTCGGTTGATGATAAAGTGTA 1098
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 854 TTTGGATAGCATTGTTCTCTTGAAGCCTAGATTATCAAGCTCGGTTGATGATAAAGTGTA 913
Query 1099 CTTGAGATTCAAACATCTGGCCAAGAAGTTGAAGCTCGTTGTTGGATCTAACAAAGATAG 1158
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||
Sbjct 914 CTTGAGATTCAAACATCTAGCCAAGAAGTTGAAACTTGTTGTTGGATCTAACAAAGACAG 973
Query 1159 CAATCACGCAGAAAACAAACCTGAAGGTAGCGGTAAAGGTAGAGAAACCGAGGCTGCTGC 1218
||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||
Sbjct 974 CAATCACGCAGAAAACAAACCCGAAGGTAGCAGTAGAGGTAGAGAAATCGAGGCTGCTGC 1033
Query 1219 TTTTAGAACAAGTGATGTTTCTACAAGTACATTTGGACATAGAAGCCCGGAGTCACCAGT 1278
|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||
Sbjct 1034 TTTTAGAACAAGTGATGTTTCTACCAGTACAGTTGGTCATAGAAGCCCGGAGTCACCGGT 1093
Query 1279 GTTTAGGCGCAAAAAACGGGTTGAATCCGATGTTTTCAAGCTAAGTATCGAGAACGATGT 1338
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 GTTTAGGCGCAAGAAACGGGTTGAATCCGATGTTTTCAAGCTAAGTATCGAGAACGATGT 1153
Query 1339 TTTGCCAAGGAGACTCATGGTAGAAAGGCAACATGAGAGATTAAATTCTTCACCGGTTTA 1398
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1154 TTTGCCAAGGAGATTCATGGTGGAAAGGCAACAGGAGAGATTAAATTCTTCACCGGTTTA 1213
Query 1399 TGAAGTTCCTTAT-CAATTGAGTAGCTTGCagacaaagctcaaagaaagaagacagaagc 1457
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1214 TGAAGTTCCTTATGC-ATTGAGTAGTTTGCAGACAAAGCTCAAAGAAAGAAGACAGAAGC 1272
Query 1458 tagagaagaaaagagagagCTTCAAGTTGTGGTCTTTGGACAAAAACTGCGAGGTTTTTG 1517
|||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1273 TAGAGAAGAAGAGAGAGAGCTTCAAGTTGTGGTCTTTGGACAAGAACTTCGAGGTTTTTG 1332
Query 1518 ATCCGAATCCATACAATTCTAATCTAAGGTCTCTCGACGGCAATTGTACAGGTTCTGCTG 1577
| |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 1333 ACCCGAATCCATACAATTCTAATCTAAGGTTTCTCGAAAACAATTGTACAGGTTCTTCTG 1392
Query 1578 AGTACAAAAGTCTGAGAACTCATGTAGAAGACGGATTCGTGGAAGATAGATGTCTTGAGA 1637
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1393 AGTACAAAAGTCTGAGAACTCATGTAGAAGACGGATTCGTGGAAGATAGATATCTTGAGA 1452
Query 1638 GCTCATTAGCAGAGTCGAATTCGAGCCTAGAAAGACAAGACTGCAACATTCATGACCCGA 1697
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1453 GCTCATTAGCGGAGACGAATTTGAGCCTAGAAAGACAAGACTGCAACATTCATGACCCGA 1512
Query 1698 AACAGGAGCAGGAACAACCGAGTCCTGTCTCTGTTCTTGAGAGGATTCATTTGGAAGATG 1757
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1513 AACAGGAGCAGGAACAACCGAGTCCTGTCTCTGTTCTTGAAAGGATTCATTTGGAAGACG 1572
Query 1758 AAACAGTTATCCCCGGAAATGTGAAAATTTCTAACCTTGAAGAGAAGATTGGAGTATCTT 1817
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |
Sbjct 1573 AAACAGTTATCCCCGGAAATGTTAAAATATCTAACCTTGAAGAGAAGATTGGATTATCAT 1632
Query 1818 TTGATGATTCC-AACATTGAACTTGTCGAAAAAGAATCCGTTCATGAGTTTGTGAAAAAA 1876
||||||| ||| |||||||| ||| | ||||||||||| ||||||||||||||||| |||
Sbjct 1633 TTGATGA-TCCTAACATTGATCTTATAGAAAAAGAATCTGTTCATGAGTTTGTGAAGAAA 1691
Query 1877 GTTCTTGAAGCTTCAAGATTGAATTGGACTAATCTTATGGCAAGGTGCAACGAAGAAACA 1936
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1692 GTTCTTGAAGCTTCAAGATTGAATTGGACTAATCTTATGGCAAGGTGCAACGAAGACACA 1751
Query 1937 TCGCTACTCGATGAATTCTCACACGGTAATCACAACGACCAGCTTCTTCTTGTTCTTGAT 1996
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1752 TCACTACTCGATGAATTCTCACACGGTAGTCACAACGACCAGCTTCTTCTTGTTCTTGAT 1811
Query 1997 TACACCGACGAGATTCTCCGCGAGATTTACCGTCAAGACATCAAGTTTTGGCCTTTCTCG 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812 TACACCGACGAGATTCTCCGCGAGATTTACCGTCAAGACATCAAGTTTTGGCCTTTCTCG 1871
Query 2057 CCATCGAAGAGCTCTAGAGTCGTCAATCTACAATCATCCCTTAGAGAAGAAGATCTGATT 2116
|||||||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 1872 CCATCGAAGAGCTCGAGAGTCCTCAATCTAGAATCATCCCTTAGAGAAGATGATCTGATT 1931
Query 2117 CACGAGACGATGAGACATTTTGACTGGAGTTTACTCTGCTCCGACTCTCCTACAAGATCA 2176
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1932 CACGAGACGATGAGACATTTTGACTGGAGTTTACTCTGCTCTGACTCTCCTACAAGATCA 1991
Query 2177 TTGGATCAGATCATTGAAACTGATATAATAAAGCCATGTCTTTGGTTGGATTTTGGTGGT 2236
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1992 TTGGATCAGATCATTGAAACTGATCTAATAAAGCCATGTCTTTGGTTGGATTTTGGTGGT 2051
Query 2237 GAATCTGAAGGTGTTGTGTCTGATATTGTGGAAAAGATTCAGCAACAATTGGTGCTTGAG 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052 GAATCTGAAGGTGTTGTGTCTGATATTGTGGAAAAGATTCAGCAACAATTGGTGCTTGAG 2111
Query 2297 ATCTCTCATGAGCTAAGAACAATGCAGAGGAGCATATTATGTCGATTAATCTGAATTTCT 2356
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2112 ATCTCTCATGAGCTAAGAACAATGCAGAGAAGCATATTATGTCGATTAATCTGAATCTCT 2171
Query 2357 TCGGATATATTCCAACAttttttttGTCTGTATAAAAATGTTTAAAATTTGAGAATCTTC 2416
||||| |||||| ||| ||||||||||||||||||||| ||||| ||||||||||||| |
Sbjct 2172 TCGGAGATATTC-AACTTTTTTTTTGTCTGTATAAAAAAGTTTATAATTTGAGAATCTAC 2230
Query 2417 TCTTCATTATTATTAGTTATCTAAATTTAA-AAAGATTCGATCT 2459
|||||||| || | ||||||||||||| || |||||||||||||
Sbjct 2231 TCTTCATT-TT-T-AGTTATCTAAATT-AAGAAAGATTCGATCT 2270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122006005376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5