BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474995
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63610.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1007 0.0
> AT1G63610.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G14910.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr1:23583521-23585723 REVERSE LENGTH=1304
Length=1304
Score = 1007 bits (545), Expect = 0.0
Identities = 742/830 (89%), Gaps = 42/830 (5%)
Strand=Plus/Plus
Query 1 AAGGAGCGTGCAAATAAAAGTCACAGTCGC--G-----A-CCCAAACTAGCGAAAAGCTT 52
|||||||||||||| ||||||||||||||| | | || || ||||||||||||||
Sbjct 10 AAGGAGCGTGCAAAAAAAAGTCACAGTCGCGAGATAAAATCCGAAGCTAGCGAAAAGCTT 69
Query 53 CGATTTCCAGCGATCCTAGAGTTGGATTTTTAGGGTTTGAATCTTGAGAA-C--GAAGAT 109
||||||||||||||||||| |||||| || || | ||| | || | || | | ||||
Sbjct 70 CGATTTCCAGCGATCCTAGTGTTGGA-TTCTACGATTTTAGGGTTTA-AATCTTG-AGAT 126
Query 110 GTGTTCGTTATCGATGCAATTCTCGCTTTTGCAAT---CACCATCTCGACCTTCTTCGTC 166
|||||||||||| |||||||||||||| ||||||| |||||||||| |||| | ||||
Sbjct 127 GTGTTCGTTATCAATGCAATTCTCGCTCTTGCAATCACCACCATCTCGTCCTTGTCCGTC 186
Query 167 TTTTTTAGCCAACCATGAACCTAAACTCTTTACTTCTTCCTCCTCTGCGAGCTTCCCCTT 226
||||||||||||||||||||||||||||| |||| |||||||||||| || |||||||||
Sbjct 187 TTTTTTAGCCAACCATGAACCTAAACTCTCTACTACTTCCTCCTCTGTGACCTTCCCCTT 246
Query 227 G-A-A-G---ACTTGGAAGAGTACCGGAAGTGGGAATTTGATGGTTCTGAGAGTTAAAGC 280
| | | | ||||||||| ||| ||||| |||||||||| ||||| |||||||||||||
Sbjct 247 GAAGACGAACACTTGGAAGTGTAGCGGAACTGGGAATTTGTTGGTTTTGAGAGTTAAAGC 306
Query 281 TTATGGTTCTTCTTC----T--TCT---GATTCCTCTCCA-GAGT-CCAATGGCACT--- 326
||||||||||||||| | ||| |||| | ||||| | | |||||||||||
Sbjct 307 TTATGGTTCTTCTTCTGATTCCTCTGCAGATT-C-CTCCACGCCTCCCAATGGCACTCGG 364
Query 327 C-G--GCCCAAAAGCAGGAGGGATATTCTACTGGAGTATGTTCAGAATGTGAAGCCTGAG 383
| | |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 365 CAGCAGCCCAAAAGCAGAAGGGATATTCTACTGGAGTATGTTCAGAATGTGAAGCCAGAG 424
Query 384 TTCATGGAGATGTTCGTTAAACGTGCCCCTAAACATGTGGTTGATGCAATGAGACAAACT 443
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 425 TTCATGGAGATGTTCGTTAAACGTGCCCCTAAACATGTGGTTGAAGCAATGAGACAAACT 484
Query 444 GTGACGAATATGATTGGAACTCTGCCACCGCAGTTTTTTGCGGTTACTGTCACCTCTGTT 503
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 485 GTGACGAATATGATTGGAACGCTGCCACCGCAGTTTTTCGCCGTTACTGTCACCTCTGTT 544
Query 504 GCTGAGAATCTTGCACAGCTGATGATGAGCGTATTGATGACTGGATATATGTTTAGAAAT 563
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 545 GCTGAGAACCTTGCACAGCTGATGATGAGCGTGTTGATGACTGGATATATGTTTAGAAAC 604
Query 564 GCTCAGTATCGTCTTGAATTGCAACAAAGTTTGGAGCAGGTTGCTCTTCCTGAACCACGT 623
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GCTCAATATCGTCTTGAATTGCAACAAAGTTTGGAGCAGGTTGCTCTTCCTGAACCACGT 664
Query 624 GATCAAAAGGGGGGTGAGGAAGACTATGCACCAGGAACTCAAAAGAATGTTTCAGGGGAA 683
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 665 GATCAAAAGGGGGGTGATGAAGACTATGCACCAGGAACTCAAAAGAATGTTTCTGGGGAA 724
Query 684 GTAATTAGGTGGAATAACATTTCTGGTCCTGAGAAAATTGATGCGAAAAAGTATATCGAG 743
|| || |||||||||||| | ||||| ||||||||||||||||| |||||||||||||||
Sbjct 725 GTGATCAGGTGGAATAACGTATCTGGCCCTGAGAAAATTGATGCAAAAAAGTATATCGAG 784
Query 744 CTTCTGGAAGCAGAGATCGAAGAACTCAACCGTCAAGTGGGGAGAAAATC 793
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CTTCTGGAAGCAGAGATCGAAGAACTCAACCGTCAAGTGGGGAGAAAATC 834
Score = 599 bits (324), Expect = 2e-170
Identities = 351/364 (96%), Gaps = 1/364 (0%)
Strand=Plus/Plus
Query 795 GAGCTTACAAGCACCGCAGGCGAAGATGTTGCTGTAGCCATGAATACATTTGTCAAGAGG 854
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 896 GAGCTTACAAGCACTGCAGGCGAAGATGTTGCCGTAGCCATGAATACATTTGTCAAGAGG 955
Query 855 CTTCTAGCTGTGTCAGACCCAAATCAAATGAAGACGAATGTGACAGAGACAAGCGCAGCG 914
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 956 CTTCTAGCTGTGTCAGACCCTAACCAAATGAAGACGAATGTGACAGAGACAAGCGCAGCG 1015
Query 915 GACCTTGCAAAATTGTTGTATTGGTTAATGGTAGTTGGATATAGCATTCGCAATATCGAG 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GACCTTGCAAAATTGTTGTATTGGTTAATGGTAGTTGGATATAGCATTCGCAATATCGAG 1075
Query 975 GTTCGGTTTGATATGGAACGTGTGCTTGGCACTCAACCGAAGCTTGCAGAGCTGCCTCCT 1034
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1076 GTTCGGTTTGATATGGAACGCGTGCTTGGTACTCAACCGAAGCTTGCAGAGCTGCCTCCT 1135
Query 1035 GGTGAAATTATTTGAACACTGTAATGAATAAAACCAGGG-CttttttttACCCGAAGAAC 1093
||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1136 GGTGAAATTATTTGAGCACTGTAATGAATAAAAGCGGGGGCTTTTTTTTACCCGAAGAAC 1195
Query 1094 TCAGATTTCACTTGTCAAGTAATTTTTATTGTAAAATTGATTGAACTTACTTTGAAGAGA 1153
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1196 TCAGATTTCATTTGTCAAGTAATTTTTATTGTAAAATTGATGGAACTCACTTTGAAGAGA 1255
Query 1154 AGAC 1157
||||
Sbjct 1256 AGAC 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5