BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474997
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63570.1 | Symbols: | Receptor-like protein kinase-related ... 1205 0.0
AT1G63550.1 | Symbols: | Receptor-like protein kinase-related ... 601 4e-171
AT1G63600.1 | Symbols: | Receptor-like protein kinase-related ... 237 1e-61
AT1G63560.1 | Symbols: | Receptor-like protein kinase-related ... 198 6e-50
> AT1G63570.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23575450-23576304 FORWARD LENGTH=855
Length=855
Score = 1205 bits (652), Expect = 0.0
Identities = 745/790 (94%), Gaps = 5/790 (1%)
Strand=Plus/Plus
Query 2 TGTCCCAACCTCAACACATGCACACTTTCTGCAATCCTTCCGACAACTTCACACAAACCA 61
|||||||||||||||||||||||||||||||| | | | ||||| ||||||||||||||
Sbjct 68 TGTCCCAACCTCAACACATGCACACTTTCTGC-A-GCGT-CGACAGCTTCACACAAACCA 124
Query 62 GTTCATACGAAACAAACCGCAACATCCTACTCACCGCTCTCAGCTTGTCTTCCCCTCTCG 121
| || |||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||
Sbjct 125 GCTCCTACGAAACAAACCGCAACATCCTACTCACCACTCTCAGCTTGACTTCCTCGCTCG 184
Query 122 TACACTATTTAAATGCCACAATCGGTCTTAGCCCCGACACAGTCTATGGCATGTTCCTCT 181
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 185 TACACTATTTAAACGCCACAATCGGTCTCAGCCCCGACACAGTCTATGGCATGTTCCTCT 244
Query 182 GTAGAGGAGACATCAACACAACAACTTGCTCCGACTGTGTCCAAACCGCAACAATCGAGA 241
||||||||||||||||||||||| ||||||| |||||||| ||||||||| |||||||||
Sbjct 245 GTAGAGGAGACATCAACACAACATCTTGCTCAGACTGTGTTCAAACCGCAGCAATCGAGA 304
Query 242 TCGCTACAAACTGTACTCTTAACAAAAGAGCGTTCATATACTACCAAGAGTGTATGGTTC 301
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 305 TCGCTACAAACTGTACTCTTAACAAAAGAGCTTTCATATACTACGACGAGTGTATGGTTC 364
Query 302 GATACTCAAATGTTTACTTCTTCTCCGAATTTGAAAGTAAACCAGTCATCGTTCTTTACT 361
||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 365 GATACTCAAATGTTTCCTTCTTCTCTGAATTTGAAAGTAAACCAGTCATCGTTCGTTACT 424
Query 362 CTCTTCGTTCTGCTCCAAACTCAAACCGGTTTAACCAAACCCTATCCAATAAATTGGACC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 425 CTCTTCGTTCTGCTCCAAACTCAAACCGGTTTAACCAAACCCTATCCAATAAATTAGACC 484
Query 422 AACTGATTCCTAACGTCTCTTCGTCAACTTTGATTCCATATTTCGTGGAGGATCAAGAAC 481
|||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||
Sbjct 485 AACTGATTCCTAACGTCTCTCCGTCAACTTTGATACCGTATTTTGTGGAGGATCAAGAAC 544
Query 482 GTGTGACTCAGTTAGAGGGTTCATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GTGTGACTCAGTTAGAGGGTTCATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATC 604
Query 542 TTGATCCATCAAACTGTACCATTTGCCTCAGATTTGCGTATGCAACAGTTTCAACTTGTT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TTGATCCATCAAACTGTACCATTTGCCTCAGATTTGCGTATGCAACAGTTTCAACTTGTT 664
Query 602 GCGGTATACCAAGTTCGGCTCTTATTTTCACTCCTAAATGTATTTTGAGGTATAGAACCT 661
||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 665 GCGGTGTACCAAGTTCGGCTCTGATTTTTACTCCTAAATGTATTTTGAGATATAGAACCT 724
Query 662 TTGTTTTGCCATCACCAGCgccgtctccatcgtctctgcctcctctatctccgttgtctc 721
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 725 TTGTTTTGCCATCACCAGCGCCGTCTCCATCGTCTCTGCCTCCTATATCTCCGACATCTT 784
Query 722 cgcctcctctgtctctgccgcctcaatcgccgcctcctctTAT-GCAACCGCCTCCGCCG 780
||||||||||||||||||||||||||| ||||||||||||| | |||||| || || |||
Sbjct 785 CGCCTCCTCTGTCTCTGCCGCCTCAATTGCCGCCTCCTCTT-TCGCAACCACCGCCCCCG 843
Query 781 CTGAACACTT 790
|||| |||||
Sbjct 844 CTGAGCACTT 853
> AT1G63550.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23569538-23571107 FORWARD LENGTH=1440
Length=1440
Score = 601 bits (325), Expect = 4e-171
Identities = 601/730 (82%), Gaps = 36/730 (5%)
Strand=Plus/Plus
Query 2 TGTCCCAACCTCAACACATGCACACTTTCTGCAATCCTTCCGACAACTTCACACAAACCA 61
|||| |||||| | ||||| ||| ||||||||||| || ||||||| ||||||||||
Sbjct 325 TGTCTCAACCTGACCACATATTTACTGTCTGCAATCCTACCAACAACTTTACACAAACCA 384
Query 62 GTTCATACGAAACAAACCGCAACATCCTACTCACCGCTCTCAGCTTGTCTTCCCCTCTCG 121
||||||||||||| |||||| ||| ||||||| || ||||| || ||||||| ||||||
Sbjct 385 GTTCATACGAAACCAACCGCGACACCCTACTCGCCTCTCTCCGCGAGTCTTCCTCTCTCG 444
Query 122 TACACTATTTAAATGCCACA-ATCGGTCTTAGCCCCGACACAGTCTATGGCATGTTCCTC 180
|||||||| ||| |||||| | ||||||||||| ||||||||| |||| |||||||||
Sbjct 445 GACACTATTCAAACGCCACAGA-AGGTCTTAGCCCTGACACAGTCCATGGAATGTTCCTC 503
Query 181 TGTAGAGGAGACATCAACACAACAACTTGC-TCCGACTGTGTCCAAACCGCAACAATCGA 239
|||||||||||||||| |||| || ||||| | |||||||||||||||||||||| |||
Sbjct 504 TGTAGAGGAGACATCACCACAGCATCTTGCGT-AGACTGTGTCCAAACCGCAACAACCGA 562
Query 240 GATCG-CTACAAACTGTACTCTTAACAAAAGAG-CGTTCATATACTACCAAGAGTGTATG 297
||||| || |||| ||||||||||||||||||| || ||||||||||| | |||||||||
Sbjct 563 GATCGCCT-CAAATTGTACTCTTAACAAAAGAGCCG-TCATATACTACGACGAGTGTATG 620
Query 298 GTTCGATACTCAAATGTTTACTTCTTCTCCGAATTTGAAAGT-AAACC-AGTCATCGTTC 355
||||||||||||||||||| ||||| ||| ||||| |||| | ||| || |||| |
Sbjct 621 GTTCGATACTCAAATGTTTCCTTCTCCTCTGAATTGGAAA-TCGTACCAAG-CATCACTA 678
Query 356 TTTACTCTCTTCGTTCTGCTCCAAACTCAAAC-CGGTTTAACCAAAC-CCTATC-CAATA 412
||||||||||||| |||||||||||| | || ||||| || ||||| | || | || |
Sbjct 679 TTTACTCTCTTCGCTCTGCTCCAAAC-CCGACTCGGTTCAATCAAACACTTA-CTGAA-A 735
Query 413 AATTGGA-CCAACTGAT-TCCTAACGTCTCTTCGTCAACTTTGATTCCATATTTCGTGGA 470
|||| | | || |||| | | ||||| |||||||| ||||| ||||||||||||||||
Sbjct 736 AATT-CAGCGAATTGATATTC-AACGTATCTTCGTCCTCTTTGGTTCCATATTTCGTGGA 793
Query 471 GGATCAAGAACGTGTGACTCAGTTAGAGGGTTCATATGATTTAGTGTCAATGATTCAGTG 530
|||||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||
Sbjct 794 GGATCAAGAACGTGTGACACAATCAGAGGGTTCTTATGATTTAGACACAATGGTTCAGTG 853
Query 531 TAGTCCTGATCTTGATCCAT-CAAACTGTACCATTTGCCT-CAGATTTGCGTA-TGCA-A 586
|||||||||||||||| || ||| ||| ||| |||| || | || |||||| | | |
Sbjct 854 TAGTCCTGATCTTGATATATTCAA-CTGCACCGTTTGTCTTC-GAGTTGCGTTCTTTAGA 911
Query 587 CAGTTTCAACTTGTTGCGGTATACCAAGTT-CGGCTCTTAT-TTTCACTCCTAAATGTAT 644
| ||||||||||||||||| | ||||||| || | || ||| |||||||||||| |
Sbjct 912 -A-TTTCAACTTGTTGCGGTTTGCCAAGTTACGCCAAG-ATCTTT-ACTCCTAAATGTCT 967
Query 645 TTTGAGGTAT-AGAACCTTTGTTTTGCCATCACCAGCgccgtctccatcgtctctgcctc 703
|||||||| | | ||||| ||||||| ||| ||| |||| ||||||||| ||| |||||
Sbjct 968 TTTGAGGTTTCA-AACCTCTGTTTTGTTATCTCCACCGCCATCTCCATCGGCTCCGCCTC 1026
Query 704 ctctatctcc 713
||| ||||||
Sbjct 1027 CTCGATCTCC 1036
> AT1G63600.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23581712-23582624 FORWARD LENGTH=913
Length=913
Score = 237 bits (128), Expect = 1e-61
Identities = 432/572 (76%), Gaps = 48/572 (8%)
Strand=Plus/Plus
Query 16 CACATGCA-CACTTTCTGCAATCC---T-TCCGACAACTTCACACAAACCAGTTCATACG 70
|||||| | ||| |||||||| || | ||||||||||| ||||||||||| ||||||
Sbjct 98 CACATG-AGCACCTTCTGCAA-CCAATTCTCCGACAACTTTACACAAACCAGCACATACG 155
Query 71 AAACAAACCGC-AACATCC-TACTCACCGCTCTCAGCTTGTC-TTCCCCTCTCGTA-CAC 126
| ||||||||| || | || ||||| || ||||| || | | |||| |||||| | | |
Sbjct 156 AGACAAACCGCGAA-A-CCGTACTCTCCTCTCTCCGCCT-CCGTTCCTCTCTCGGATC-C 211
Query 127 TATTTAAATGCCACAATC-GGTCTTAGCCCCGACACAGTCTATGGCATGTTCCTCTGTAG 185
|||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 212 TATTCCAATGCCAC-GGCGGGTATTAGCCCCGACACAGTCCGTGGCATGTTCCTCTGTAG 270
Query 186 AGGAGACATCAACACAA-CAACTTGCTCCGACTGTGTCCAAACCGCAACAATCGAGATCG 244
|||||||||| || || || |||| || |||||||| ||||||||||| | || |||
Sbjct 271 AGGAGACATCT-CAGAAACATCTTGTTCAGACTGTGTTCAAACCGCAACCCTAGAAATCT 329
Query 245 CTACAAACTGTACTCTTAACAAAA-GA-GCGTTCATATACTACCAAGAGTGTATGGTTCG 302
| | |||||| ||| | | ||||| || || ||||||| ||| ||||||||||||| ||
Sbjct 330 CAAGAAACTGCACT-T-ACCAAAAAGAAGCTTTCATATTCTATGAAGAGTGTATGGTACG 387
Query 303 ATACTCAAATGTT-TACTTCTTCTCCGAATTTGAAAGTAA-ACCAGT-CATCGTTCTTTA 359
||||| || | | ||| |||||| | || | || ||| | |||| || ||
Sbjct 388 TTACTCGGAT-TCATCCTTTTTCTCCCTCGTAGAC-GAAAGACCT-TACATCATTAGATA 444
Query 360 CTCTCTTC-GTTCTGCTCCAAACTCAAACCGGTTTA-ACCAAACCCTATCCAATAAATTG 417
|||| || ||| |||||| |||| | || || || |||| || ||| ||||| ||
Sbjct 445 CTCT-TTGAGTTATGCTCCTAACTTGGATCGCTTCCCAC-AAACACTGTCCGATAAAATG 502
Query 418 GACCAACTGATTCCT-AA--CGTCT-CTTCGTCAACT-T-TGATTC--CA---TATTTCG 466
|| | || || | | || || || |||| || | | | || | || |||||||
Sbjct 503 GATGAGCTTAT-CATCAATGCGACTTCTTCCCCATCGCTATCAT-CAACACCGTATTTCG 560
Query 467 TGGAGGATCAAGAACGTGTGACTCAGTTAGAGGGTTCATATGATTTAG-TGTCAATGATT 525
||||||||||||||||||||| ||||| |||||||| | |||| ||| | |||||| |
Sbjct 561 TGGAGGATCAAGAACGTGTGAAACAGTTCGAGGGTTCGTTTGATATAGAT-TCAATGGCT 619
Query 526 CAGTGTAGTCCTGATCTTGATCCATCAAACTG 557
|||||||||||||||||||||||| ||||||
Sbjct 620 CAGTGTAGTCCTGATCTTGATCCAAGAAACTG 651
> AT1G63560.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23573094-23574278 FORWARD LENGTH=1185
Length=1185
Score = 198 bits (107), Expect = 6e-50
Identities = 271/345 (79%), Gaps = 32/345 (9%)
Strand=Plus/Plus
Query 2 TGTCCCAACCTCAACACAT-GCACACTTTCT--G-C-A-ATCCT-TCCGACAACTTCACA 54
||||||||||||||||||| || |||||||| | | | | | |||||||||||||||
Sbjct 69 TGTCCCAACCTCAACACATGGC-CACTTTCTGCGACGACAGATTATCCGACAACTTCACA 127
Query 55 CAAACCAGTTCATACGAAA-CAAACCG-CAACATCCTACTCACCGCTCTCAGCTTG-TC- 110
|||||||| |||||| ||| ||||||| || | |||||| | ||||| | || |
Sbjct 128 CAAACCAGCTCATAC-AAAGCAAACCGTGAA-ACCCTACTTTCTTCTCTC--CGTGACCG 183
Query 111 TT-C-CCCTCTCGTACACTATTTAAATGCCACAATCGGTCTTAGCCCCGACACAGTCTAT 168
|| | |||| | | || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 184 TTCCTCCCT-TGGAAC-CTATTCCAATGCCACAATCGGTCTTAGCCCCGACACAGTCTAT 241
Query 169 GGCATGTTCCTCTGTAGAGGAGACATCAACACAACAACTTGCTCCGACTGTGTCCAAACC 228
|||||||| ||||| |||||||| ||| || |||| | || || ||||||||| |||||
Sbjct 242 GGCATGTTTCTCTGCCGAGGAGACCTCACCAAAACATCATGTTCGGACTGTGTCAAAACC 301
Query 229 GCAACAATCGAGATCGCTACAAACTG-TA-CT-C--TTA-ACAAAAGAGC-GTTC-A-TA 279
||||| | || ||| ||| ||| | || || | || | |||| | | | || | ||
Sbjct 302 GCAACCCTAGAAATCACTAAAAA-TAATAACTGCACTTCCAGAAAA-A-CTGCTCTAATA 358
Query 280 TACTACCAAGAGTGTATGGTTCGATACTCAAATGTTTACTTCTTC 324
| |||| | |||||||||||||||||||| ||||||| |||||||
Sbjct 359 TTCTACGAGGAGTGTATGGTTCGATACTCCAATGTTTCCTTCTTC 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5