BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474999
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63550.1 | Symbols: | Receptor-like protein kinase-related ... 1192 0.0
AT1G63570.1 | Symbols: | Receptor-like protein kinase-related ... 457 2e-127
AT1G63600.1 | Symbols: | Receptor-like protein kinase-related ... 121 2e-26
> AT1G63550.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23569538-23571107 FORWARD LENGTH=1440
Length=1440
Score = 1192 bits (645), Expect = 0.0
Identities = 808/884 (91%), Gaps = 21/884 (2%)
Strand=Plus/Plus
Query 429 CCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCACAGCATCTTGCGC 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCACAGCATCTTGCGT 535
Query 489 AGATTGTGTCCAAACCGCAACAACTGAGATCG-CTACAAATTGTACTCTTAACAAAAGAG 547
||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 536 AGACTGTGTCCAAACCGCAACAACCGAGATCGCCT-CAAATTGTACTCTTAACAAAAGAG 594
Query 548 CGGTCATATACTACGAGGAGTGTATGGTTCGATACTCAAATGTTTCTTTCTCCTCTGAAT 607
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 CCGTCATATACTACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTCCTCTGAAT 654
Query 608 TGGAATTCACACCAAGCATCACTATATACTCTCTTCGCTCTGCTCCAAACCCGACTCGGT 667
||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 655 TGGAAATCGTACCAAGCATCACTATTTACTCTCTTCGCTCTGCTCCAAACCCGACTCGGT 714
Query 668 TCAATCAAACACTTACTGAAAAATTCAGCGAACTGATATTCAACATATCTTCGTCCTCTT 727
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 715 TCAATCAAACACTTACTGAAAAATTCAGCGAATTGATATTCAACGTATCTTCGTCCTCTT 774
Query 728 TGATTCCATATTTCGTGGAGGATCAAGAACGTGTGACACAATCAGAAGGTTCTTATGATT 787
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 775 TGGTTCCATATTTCGTGGAGGATCAAGAACGTGTGACACAATCAGAGGGTTCTTATGATT 834
Query 788 TAGAGTCAATGGTTCAATGTAGTCCTGATCTTGATATTTTCAACTGTACCGTTTGTCTTA 847
|||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 835 TAGACACAATGGTTCAGTGTAGTCCTGATCTTGATATATTCAACTGCACCGTTTGTCTTC 894
Query 848 GGGTTGCCTTCTTAAGAATTTCAACTTGTTGCGGTTTGCCAAGTTACGCTAAAATCTTTA 907
| ||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 895 GAGTTGCGTTCTTTAGAATTTCAACTTGTTGCGGTTTGCCAAGTTACGCCAAGATCTTTA 954
Query 908 CTCCTAAATGTCTTTTGAGGTTTCAAACCTCTGTTTTGTCATCTCCACCGTCATCTCCAT 967
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 955 CTCCTAAATGTCTTTTGAGGTTTCAAACCTCTGTTTTGTTATCTCCACCGCCATCTCCAT 1014
Query 968 CGCCTCCGCCTCCTCGGTCTCCACTGCCTCAATCATCGCCGCCTCCTTCTTTACCAAAGA 1027
|| ||||||||||||| ||||||| |||| |||||||||| ||| ||||||||||| |||
Sbjct 1015 CGGCTCCGCCTCCTCGATCTCCACCGCCTAAATCATCGCCACCTTCTTCTTTACCACAGA 1074
Query 1028 CGCCACCGCCCCCGCTGGTTTTCACGCCGCCACGGAACTTTCCACCTGCTAGCGGGTCGT 1087
||||| |||| |||||||||||||||||||||| |||| ||||| | ||||||| ||||
Sbjct 1075 CGCCATCGCCGCCGCTGGTTTTCACGCCGCCACAGAACGTTCCAAATCCTAGCGGATCGT 1134
Query 1088 TTTCCTTTAACGTTCTAAAAGGAAATGAAATTTTTGGGAGACTTGTTGTCACAATGACAG 1147
|||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||||||||
Sbjct 1135 TTTCCTTTAACGTTCTTAAAGGAAATGTAATATTTGGGAGAATTGTTGTTACAATGACAG 1194
Query 1148 CTTTGATGTTTGCACTTGTGGAT-TTGTGATCTAATTTCATGAACTCATGGATTATAAAT 1206
||||| ||||||||||||||||| || ||||| | | | | |||||||| ||||||
Sbjct 1195 CTTTGGTGTTTGCACTTGTGGATCTT-TGATC-A-TAT--T----TCATGGATCATAAAT 1245
Query 1207 ATTGATGATTTGTAATAATTTGCTTTTC-TTCAATCTGTGTGATGTGTTACGTTCAT-A- 1263
|||||||||| ||||||||||| | ||| |||||| |||||||||||| |||||| | |
Sbjct 1246 ATTGATGATTCGTAATAATTTG-TATTCCTTCAATTTGTGTGATGTGT-ACGTTC-TCAC 1302
Query 1264 AG-ATCCAATATCAC-AAAAGATGTTAATATGGTTCCTACAAAA 1305
|| |||||| ||||| |||| |||||||||||||||||| ||||
Sbjct 1303 AGGATCCAAGATCACTAAAA-ATGTTAATATGGTTCCTAAAAAA 1345
Score = 593 bits (321), Expect = 1e-168
Identities = 400/436 (92%), Gaps = 14/436 (3%)
Strand=Plus/Plus
Query 1 AGGACTAAGTCTATGTTTTGCTTAAGAAACACAAAAA-C-AATTGTGTCAACTTTATGAT 58
|||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 1 AGGACTAAGTCTCTGTTTTGATTAAGAAACACAAAAACCAAATTGTGTCAACTTTATGAT 60
Query 59 TTTGTCTAAGTAAAGATATATAGCTATCATGGATGAAAACTATATTAGTTTTACATATTC 118
||||||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 61 TTTGTCTTGGTAAAG--ATATAGCTATCATGGATGAAAACAATATAAGTCTTACATATTC 118
Query 119 TTCCTTCGAATTGGT-ATACCATCATTAGTT-GGACATCATATTGAATAAATCAACAAAA 176
|| |||||||||||| |||||||| ||| || |||||||| ||||||||||||||||||
Sbjct 119 TTTCTTCGAATTGGTAATACCATCGTTA-TTCCGACATCATTTTGAATAAATCAACAAAA 177
Query 177 AGAAAAGAAGTTATCTTCTTTCTACTAAAAATTCCTATCTCCTCTGTTTTGT----TAAA 232
|||||| ||| | | |||||||||||| |||||||||||||||||||||||| |||
Sbjct 178 AGAAAAAAAG-T-T-TTCTTTCTACTATAAATTCCTATCTCCTCTGTTTTGTCAAAAAAA 234
Query 233 CAACAAAGAACAAAATGGCAAGAATCATAATTACCCTCACTATTCCACTGTTTTACTTCT 292
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 235 AAACAAAGAACAAAATGGCAAGAATCATAATTACCCTCACTATCCCTCTGTTTTACTTCT 294
Query 293 TCTTCTTCTCTTTGTTATCTCACCAAACCATGTCTCAACCTGACCACATGTTTACTTTCT 352
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 295 TTTTCTTCTCTTTGTTATCTCACCAAACCATGTCTCAACCTGACCACATATTTACTGTCT 354
Query 353 GCAATCCTAACAACAACTTTACACAAACCAGTTCATACGAAACAAACCGCGACACCCTAC 412
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 355 GCAATCCTACCAACAACTTTACACAAACCAGTTCATACGAAACCAACCGCGACACCCTAC 414
Query 413 TCGCCTCTCTCCGCGA 428
||||||||||||||||
Sbjct 415 TCGCCTCTCTCCGCGA 430
> AT1G63570.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23575450-23576304 FORWARD LENGTH=855
Length=855
Score = 457 bits (247), Expect = 2e-127
Identities = 465/567 (82%), Gaps = 28/567 (5%)
Strand=Plus/Plus
Query 429 CCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCACAGCATCTTGCGC 488
||| ||||||||| |||| ||||||||||||||||||||||||| |||| |||||||| |
Sbjct 216 CCCCGACACAGTCTATGGCATGTTCCTCTGTAGAGGAGACATCAACACAACATCTTGCTC 275
Query 489 AGATTGTGTCCAAACCGCAACAACT-GAGATCGCTACAAATTGTACTCTTAACAAAAGAG 547
||| ||||| ||||||||| ||| | |||||||||||||| |||||||||||||||||||
Sbjct 276 AGACTGTGTTCAAACCGCAGCAA-TCGAGATCGCTACAAACTGTACTCTTAACAAAAGAG 334
Query 548 CGGTCATATACTACGAGGAGTGTATGGTTCGATACTCAAATGTTTCTTTCTCCTCTGAAT 607
| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 335 CTTTCATATACTACGACGAGTGTATGGTTCGATACTCAAATGTTTCCTTCTTCTCTGAAT 394
Query 608 TGGAAT-TCACACCAAG-CATCACTA-TATACTCTCTTCGCTCTGCTCCAAACCCGA-CT 663
| ||| | | |||| | |||| | | ||||||||||| |||||||||||| | | |
Sbjct 395 TTGAAAGTAA-ACCA-GTCATCGTTCGT-TACTCTCTTCGTTCTGCTCCAAACTCAAAC- 450
Query 664 CGGTTCAATCAAACACT-TACTGAA-AAATTCAG-CGAACTGATATTC-AACATATCTTC 719
||||| || ||||| || | | || ||||| || | ||||||| | | ||| | ||| |
Sbjct 451 CGGTTTAACCAAACCCTATCC--AATAAATT-AGACCAACTGAT-TCCTAACGTCTCTCC 506
Query 720 GTCCTCTTTGATTCCATATTTCGTGGAGGATCAAGAACGTGTGACACAATCAGAAGGTTC 779
||| ||||||| || ||||| ||||||||||||||||||||||| || | ||| |||||
Sbjct 507 GTCAACTTTGATACCGTATTTTGTGGAGGATCAAGAACGTGTGACTCAGTTAGAGGGTTC 566
Query 780 TTATGATTTAGAGTCAATGGTTCAATGTAGTCCTGATCTTGATATTTTCAA-CTGTACCG 838
|||||||||| ||||||| |||| |||||||||||||||||| | ||| |||||||
Sbjct 567 ATATGATTTAGTGTCAATGATTCAGTGTAGTCCTGATCTTGATCCAT-CAAACTGTACCA 625
Query 839 TTTGTCTTAGGGTTGCCT-T-CTTAAGAATTTCAACTTGTTGCGGTTTGCCAAGTTACG- 895
|||| || || |||| | | | || | ||||||||||||||||| | ||||||| ||
Sbjct 626 TTTGCCTCAGATTTGCGTATGC--AACAGTTTCAACTTGTTGCGGTGTACCAAGTT-CGG 682
Query 896 CTAAAATCTTTACTCCTAAATGTCTTTTGAGGTTTCA-AACCTCTGTTTTGTCATCTCCA 954
|| || ||||||||||||||| ||||||| | | | ||||| ||||||| |||| |||
Sbjct 683 CTCTGATTTTTACTCCTAAATGTATTTTGAGATAT-AGAACCTTTGTTTTGCCATCACCA 741
Query 955 CCGTCATCTCCATCGCCTCCGCCTCCT 981
|| | ||||||||| ||| |||||||
Sbjct 742 GCGCCGTCTCCATCGTCTCTGCCTCCT 768
> AT1G63600.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23581712-23582624 FORWARD LENGTH=913
Length=913
Score = 121 bits (65), Expect = 2e-26
Identities = 312/423 (74%), Gaps = 49/423 (12%)
Strand=Plus/Plus
Query 429 CCCTGACACAGTCCATGGAATGTTCCTCTGTAGAGGAGACATCACCA-CAGCATCTTGCG 487
||| |||||||||| ||| |||||||||||||||||||||||| || | |||||||
Sbjct 238 CCCCGACACAGTCCGTGGCATGTTCCTCTGTAGAGGAGACATC-TCAGAAACATCTTGTT 296
Query 488 CAGATTGTGTCCAAACCGCAACAACT-GAGATCGCTACAAATTGTACTCTTAAC-AAAAG 545
|||| ||||| ||||||||||| || || ||| | | ||| || | |||| | |||||
Sbjct 297 CAGACTGTGTTCAAACCGCAAC-CCTAGAAATCTCAAGAAACTG--CACTTACCAAAAAG 353
Query 546 -AGCGGTCATATACTACGAGGAGTGTATGGTTCGATACTC--A--AATGTTTCTTTCT-C 599
||| |||||| ||| || ||||||||||| || ||||| | || || ||||| |
Sbjct 354 AAGCTTTCATATTCTATGAAGAGTGTATGGTACGTTACTCGGATTCATCCTT-TTTCTCC 412
Query 600 CTCTGAATTGGAATTCACACC-AAGCATCACTATATACTCTCTT-CGCTCTGCTCCAAAC 657
||| | | ||| | ||| | ||||| || ||||||| || | | |||||| |||
Sbjct 413 CTC-GTAGACGAA---AGACCTTA-CATCATTAGATACTCT-TTGAGTTATGCTCCTAAC 466
Query 658 -CCGACTCGGTT-CAATCAAACACT-TACTGA-AAAATTCAGCGAACTGAT-ATTCAA-- 710
|| ||| || | | |||||||| | | || ||||| | || || || | ||||
Sbjct 467 TTGGA-TCGCTTCCCA-CAAACACTGT-CCGATAAAATGGA-TGAGCTTATCA-TCAATG 521
Query 711 CATATCTTCGTCCTCTTTG--AT--TC--CA---TATTTCGTGGAGGATCAAGAACGTGT 761
| | |||| ||| | | | || || || ||||||||||||||||||||||||||
Sbjct 522 C-GA-CTTCTTCCCCATCGCTATCATCAACACCGTATTTCGTGGAGGATCAAGAACGTGT 579
Query 762 GACACAAT-CAGAAGGTTC-TTATGATTTAGAGTCAATGGTTCAATGTAGTCCTGATCTT 819
|| ||| | | || ||||| || |||| |||| ||||||| ||| |||||||||||||||
Sbjct 580 GAAACAGTTC-GAGGGTTCGTT-TGATATAGATTCAATGGCTCAGTGTAGTCCTGATCTT 637
Query 820 GAT 822
|||
Sbjct 638 GAT 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5