BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475002

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63522.1 | Symbols:  | Defensin-like (DEFL) family protein |...   274    2e-73


> AT1G63522.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:23562205-23562482 REVERSE LENGTH=278
Length=278

 Score =  274 bits (148),  Expect = 2e-73
 Identities = 156/160 (98%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  1    TATATGTATATAGGTGTGGTGATGAGTGCAAGGATACAAGAAAGCACAAACGATATATTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  19   TATATGTATATAGGTGTGGTGATGAGTGCAAGGATACAAGAAAGCACAAACGATATATTG  78

Query  61   AAGCCTATAACATGCAATAGCAATGCAGATTGTGCCAAGTTTTGCAAAGGTCCAATCCAC  120
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  79   AAGCCTATAACATGCAATACCAATGCAGATTGTGCCAAGTTTTGCAAAGGTCCAATCCAC  138

Query  121  AACTGCGTATTTCATACTTGTCAATGCGTACCCGGAAATC  160
            ||||| || | |||||||||||||||||||||||||||||
Sbjct  139  AACTGTGTCTATCATACTTGTCAATGCGTACCCGGAAATC  178



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6891285087


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5