BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475003
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63520.1 | Symbols: | Protein of unknown function (DUF3527)... 2490 0.0
> AT1G63520.1 | Symbols: | Protein of unknown function (DUF3527)
| chr1:23559887-23562143 FORWARD LENGTH=2073
Length=2073
Score = 2490 bits (1348), Expect = 0.0
Identities = 1583/1696 (93%), Gaps = 17/1696 (1%)
Strand=Plus/Plus
Query 168 CAAAAGATGGCACAGAGTTCTGAAAATGTTCTTCCTACTCTACGAGATTTTTTCGATTCT 227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 211 CAAAAGATGGCACAGAGTTCTGAAAATGTTCTTCCTACTCTACGAGATTTCTTCGATTCT 270
Query 228 AAAAAGGCAGGGGAAGAGGATGAGTTTATGTTTTATCGGGCGATTAACTCCTCGTGCAAG 287
|||||||| ||||||||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 271 AAAAAGGCTGGGGAAGAGGACGAGTTTTTGTTTTATCGGGCGCTTAACTCCTCGTGCAAG 330
Query 288 AAACCTCCAAAACCGGGAAACAAGGCGAAAGAGAGACATGGTTTTTTCAATCAGGGATCC 347
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 331 AAACCTCCAAAACCGGGAAACAAGGCGAAGGAGAGACATGGTTTCTTCAATCAGGGATCC 390
Query 348 AAGGAAAGAAGAAGAAGGAACATATCTGATGCTGAAAAGTTTTCAGTTGAGCAATACTCT 407
||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||| |||
Sbjct 391 AAGGAGAGAAGAAGAAGGAAAATATCAGATGCTGAAAAGTTTTCAGTGGAACAATATTCT 450
Query 408 TCTGGTGGTTTTTTCGGGGTACGGTTGAACACGAAT-GG-G-CGACATCAGCAACAACAA 464
||||||||||||||||| |||||||||||||||||| || | | ||| || |||||||||
Sbjct 451 TCTGGTGGTTTTTTCGGTGTACGGTTGAACACGAATGGGAGACAACAACAACAACAACAA 510
Query 465 CGATTAGCTAAGCCTTTAGGTT-CAGAGAGAAACATGGAACCAAGATTGCAAAAGTCATT 523
|||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||| |
Sbjct 511 CGATTAGCTAAGCCTTTA-GTTACAGAGAGAAACATGGAACCGAGGTTGCAAAAGTCACT 569
Query 524 CTCTGCTAGAATGCAACTCCCGTTTATGCCTTCTTCAAAGGGAAGCAATGAGTCTTCTTC 583
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 570 CTCTGCTAGAATGCAATTCCCATTTATGCCTTCTTCAAAGGGAAGCAATGAGTCTTCTTC 629
Query 584 TACTAATACTTCAAGCTCAACGAGCTGGTTTAACCGTATCAAGAAAATGTCCAATCCATT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TACTAATACTTCAAGCTCAACGAGCTGGTTTAACCGTATCAAGAAAATGTCCAATCCATT 689
Query 644 CTCAAACAGAAATCCTCTGTTACCAAAATCAGGTGAAGAAATGTTCTCAAGAAACAAGTC 703
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 690 TTCAAACAGAAATCCTCTGTTACCAGAATCAGGCCAAGAAATGTTCTCAAGAAACAAGTC 749
Query 704 TTCACCTGTTCATCTACATGCTCATCTCAGTATGGAATATGAACTTGGGATGCCTGTTTT 763
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 750 TTCACCTGTTCATCTACATGCTCATCTAAGGATGGAATATGAACTTGGGATGCCTGTTTT 809
Query 764 CATCTTCTCGCTAGACCGCCCGGATGATGTATATATGGCCAGTACAAGAATGGATGATAA 823
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CATATTCTCGCTAGACCTCCCGGATGATGTATATATGGCCAGTACAAGAATGGATGATAA 869
Query 824 TGACTCTCGGTTCGTCTATTCGTTTCGCTACATTGGTGGTAGAAGCAATAAGAATGTTTC 883
|| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 870 GGAATCTCGGTTTGTCTATTCGTTTAGCTACATTGGAGGTAGAAGCAATAAGAATGTTTC 929
Query 884 AGGTCAAGAATCTTCACTAATAGGACAGATGCAAGTTTCATCTCAGATCTGCTTAGAGCA 943
|||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 930 AGGTAAAGAATCTTCACTAATAGGACAGATGCAAGTTTCAACTCAAATCTGCTTAGAGCA 989
Query 944 AGAACCATATGAAGAAGATCTTGTGGAATCAACTGTGTCTGAATTCGTTCTATTCGACAT 1003
|||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 990 AGAACCATATGAAGAAGATCTTGTGGCATCAACTGTCTCTGAATTCGTTCTTTTCGACAT 1049
Query 1004 CGCACGTGCAAGGAGAAGTGGCTTCAAGCATGAAAACCTGTCAAGACAGAACAGTTTCAG 1063
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1050 TGCACGCGCAAGGAGAAGTGGCTTCAAGCATGAAAACCTGTCAAGACAAAACAGTTTCAG 1109
Query 1064 ACGAGGATCGATATTTTCAGAAACAGAGAACTCTGCATCTGATCAAATACAAGAAAAGCT 1123
|||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 1110 ACGAGGATTGATATTTTCAGAAACAGAGAACTCTGTATCTGATCTACTACAAGAAAAGCT 1169
Query 1124 CCCAAGGCAGAACAGTTTCAACCGAGGATTGACTCGTAGTCTATCGAAACGTTCAGAGAA 1183
|||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 1170 GCCAAGGCAGAACAGTTTCAATCGAGGATTGACTCGTAGTCTATCAAAACATTCAGAGAA 1229
Query 1184 CACTGCATCTGATCCTTGGCCTGTCTCAGATTTACATCCAGGACTAGAGATTGCAGCAAT 1243
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1230 CACTGCATCTGGTCCTTGGCCTGTCTCAGATTTACATCCAGGACTTGAGATTGCAGCAAT 1289
Query 1244 TGTTATTCAAGACTCTTCTACAAACAGTAAACTAC-CGAGTCGAGCGATGAAAGTCATAG 1302
||||||||||||||||||| ||||||| ||||| | ||||||| | ||||||||||||||
Sbjct 1290 TGTTATTCAAGACTCTTCTTCAAACAGCAAACT-CTCGAGTCGTGAGATGAAAGTCATAG 1348
Query 1303 TTCCAACAGGAAACCACGGTTTTCCTGATACCGAAAACTCATGTCCTACACCGATACTGC 1362
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 1349 TTCCAACAGGAAACCACGGTTTGCCTGATACCGAAAACTCGTGTCCTACGCCGATACTGC 1408
Query 1363 AAAGATGGAGATCAGGTGGAGGCTGTGACTGTAGCGGATGGGACATGGGCTGTCACCTTT 1422
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1409 AAAGATGGAGATCAGGTGGAGGTTGTGACTGTAGCGGATGGGACATGGGATGTCACCTTT 1468
Query 1423 TTGTTCTAGAATCTCCAGAACTCACCAACGATCATCTTGGTTTGGAACTTTTCATAGAGG 1482
|||| || |||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1469 TTGTCCTTGAATCTCCAGAACTCATCAACAATCATCATGGTTTGGAACTTTTCATAGAGA 1528
Query 1483 GTGGGAAAGAGATCACACCAGCAATCACAATGGTGTTTATCAGAGAAGGACATTACGAGG 1542
||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||||
Sbjct 1529 GTGGGAAAGAGATCACACCAGCAATGACAATGACATGTATCAGAGAAGGACATTATGAGG 1588
Query 1543 TAAACTTCCACGCGAAGCTATCAGCTTTACAAGCATTCTCAGTCTGTGTCGCCGAGTTTC 1602
|||| || ||||||||||| ||||| ||||||||||||||| ||||||| |||||| | |
Sbjct 1589 TAAAATTTCACGCGAAGCTCTCAGCATTACAAGCATTCTCAATCTGTGTAGCCGAGCTGC 1648
Query 1603 ACAGAAGTGAAGTCTCAAGAATAGAGAGAAACATCTCTTTGTCTAGATGCAGTTCACTCA 1662
| |||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 1649 AAAGAACTGAAGTCTCAAGAGGAGAAAGAAACATATCTTTGTCTAGATGCAGTTCACTCA 1708
Query 1663 GAGAGCTTATCGAAATGGAAACTCCGGTGAATTCAAGGGAAGTCCCTTC-TTCTTTCATG 1721
|||||||||| ||||||||||||||| ||||| |||| ||||||| ||| ||||||||||
Sbjct 1709 GAGAGCTTATTGAAATGGAAACTCCGATGAATACAAGAGAAGTCC-TTCCTTCTTTCATG 1767
Query 1722 CCTAATGTCACATTCTCTCCAATCTCAAGGGTTTAAAA-CACATCACAAAGTAA-C---C 1776
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1768 CCTAATGTCACATTCTCTCCAATCTCAAGGGTTTAAAAACACATCACAAAGTAATCAATC 1827
Query 1777 TCTAGCTTCCTCTTATGTGCATATATATAGTCATTATACATACCATACAAATAAGTATCA 1836
||||| | ||||||||||||||||||| |||| |||||||||||||||||||| |||||
Sbjct 1828 TCTAG-TCCCTCTTATGTGCATATATA--GTCACTATACATACCATACAAATAAATATCA 1884
Query 1837 GCCAGAATCTAGCTAC 1852
||||||||||||||||
Sbjct 1885 GCCAGAATCTAGCTAC 1900
Score = 106 bits (57), Expect = 9e-22
Identities = 92/107 (86%), Gaps = 10/107 (9%)
Strand=Plus/Plus
Query 1 CTTTAGATCTGTAAGAGCGTAGGCTAAATTTTATTGACTTCTCTATCCTAGATTTTGCAA 60
|||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||| |
Sbjct 19 CTTTAGATCTGTAAGAGCGTAGGCTAAAATTT-TTGACTTCTCTATC-TAGAGTTTGCTA 76
Query 61 TTTTAACTTCCCTCTTTGT-TAAG-GTT-AT---CAGTGACAGTTTC 101
|||||||||| ||||||| ||| ||| || |||||| ||||||
Sbjct 77 TTTTAACTTC--TCTTTGTGTAAAAGTTCATAATCAGTGATAGTTTC 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97238455665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5