BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475007
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63460.1 | Symbols: GPX8, ATGPX8 | glutathione peroxidase 8 ... 983 0.0
> AT1G63460.1 | Symbols: GPX8, ATGPX8 | glutathione peroxidase
8 | chr1:23535016-23536467 FORWARD LENGTH=747
Length=747
Score = 983 bits (532), Expect = 0.0
Identities = 611/648 (94%), Gaps = 9/648 (1%)
Strand=Plus/Plus
Query 27 TCCTTGCTCGTTGACTGCTTCTTCTTCATTT-CTAGT--GAAATGGCGACGAAGGACCCA 83
||||| ||||||||||||||||||| ||||| | ||| ||||||||||||||||| |||
Sbjct 61 TCCTTCCTCGTTGACTGCTTCTTCTGCATTTCCCAGTGAGAAATGGCGACGAAGGAACCA 120
Query 84 GACTCTGTTTACGAGATT-AGCATCGAGGATGC-AAAGGGAAACATCTTAGAACTCAGTC 141
|| |||||||||||| || |||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 121 GAATCTGTTTACGAG-TTAAGCATCGAGGATGCAAAAGGG-AACAACTTAGCACTCAGTC 178
Query 142 AATACAAAGAAAAAGTTCTTTTGATTGTCAATGTTGCTTCCAAATGTGGGATGACAAACT 201
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 AATACAAAGACAAAGTTCTTTTAATTGTCAATGTTGCTTCCAAATGTGGGATGACAAACT 238
Query 202 CAAACTACACTGAATTGAATGAGCTTTATAGCAAGTACAAAGACAAAGGTCTGGAGATTC 261
|||||||||||||||||||||||||||| | || ||| ||||| ||||||||||||||||
Sbjct 239 CAAACTACACTGAATTGAATGAGCTTTACAACAGGTATAAAGATAAAGGTCTGGAGATTC 298
Query 262 TAGCATTTCCTTGTAACCAGTTTGGTGATGAGGAACCGGGAACTAGTGACCAAATCACTG 321
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 299 TAGCATTTCCTTGTAACCAGTTTGGTGACGAGGAACCGGGAACTAATGACCAAATTACTG 358
Query 322 ACTTTGTTTGTACTCGCTTCAAATCTGAATTCGCCATTTTCAACAAGATTGAAGTAAACG 381
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 359 ACTTTGTTTGTACTCGCTTCAAATCTGAATTCCCCATTTTCAACAAGATTGAAGTAAACG 418
Query 382 GAGAGAATGCTTCTCCTCTGTATAAGTTCTTGAAGAAAGGCAAATGGGGAATCTTCGGCG 441
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 GAGAGAATGCTTCTCCTCTGTATAAGTTCCTGAAGAAAGGCAAATGGGGAATCTTCGGCG 478
Query 442 ATGACATTCAATGGAACTTTGCTAAGTTTCTTGTTGACAAGAACGGTCAAGCTGTAGAAC 501
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 479 ATGACATTCAATGGAACTTTGCTAAGTTTCTTGTTGACAAAAACGGTCAAGCTGTACAAC 538
Query 502 GTTATTATCCAACTACTTCCCCTCTTACTCTTGAGCATGACATAAAGAAGCTTCTGAATA 561
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 539 GTTATTATCCAACTACTTCCCCTCTTACACTTGAGCATGACATAAAGAATCTTCTGAATA 598
Query 562 TCTCCTGAATGATGCAGCTTTGTTGCTGAATCGAATTGTATCTGATTATGAACCTCTCTA 621
|||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 599 TCTCCTGAATGATGAAGCTTTGTTGCTGAATCGTATTGTATTTGATTATGAACCTCTCTC 658
Query 622 ATTCAATAAAGAGCCATGACATTGACTTGGATTGATCTT-TTCTGTTT 668
|||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 659 ATTCAATAAAGAGCCATGACATTGACTTGGATTGAT-TAGTTCTGTTT 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5