BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475010
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63420.1 | Symbols: | Arabidopsis thaliana protein of unkno... 2564 0.0
> AT1G63420.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr1:23515874-23518910 FORWARD LENGTH=1870
Length=1870
Score = 2564 bits (1388), Expect = 0.0
Identities = 1640/1756 (93%), Gaps = 40/1756 (2%)
Strand=Plus/Plus
Query 1 ATGACCTCTCTATTCTCTAAACCTAGAGCTCTCACTTCTCATTTCACCGACTTTAAAACT 60
||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 ATGACGTCTCTATTCTCTAAACCTAGAGCTCTCACTTCTCATATCACCAACTTTAAAACT 60
Query 61 TACCGCCCGGTGATCGGAAAACTCCACGTGGCCACTTTGACGCTTCTTCTCTTCCTTATC 120
||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 61 TACCGTCCGGTTATCGGAAAACTCCACGTGGCAACTTTAACGCTTCTTCTCTTCCTAATC 120
Query 121 GCCGCCGGTATTGCCGTCACTTCCTCTCTATGGCTTAACAAGACGACGAAAGCATTTGAT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GCCGCCGGTATTGCCGTCACTTCCTCTCTATGGCTTAACAAGACGACAAAAGCATTTGAT 180
Query 181 CGACCGACATTAGTAGCAAC---A--A-AACCGGAGCTAGAACCACCGCA-GAAAACCGA 233
|||||||||||||||||||| | | ||||||||||||| |||||||| | ||||||
Sbjct 181 CGACCGACATTAGTAGCAACAAAACCAGAACCGGAGCTAGAGCCACCGCATG-AAACCGG 239
Query 234 AGTATTGGTTAATTGCACAAGTTTCTTGAATCACAACCGGTCCGGTTCTTGCTCAAGAAC 293
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 AGTATTGGTAAATTGCACAAGTTTCTTGAATCAAAACCGGTCCGGTTCTTGCTCAAGAAC 299
Query 294 ACCTCTATGGCTTAACAAGACAAAACCATATAATC-A---AC-----CGACAATAAAACC 344
||||||| |||||||||| |||||||| | ||| | || | |||||||||||
Sbjct 300 ACCTCTA---CTTAACAAGAAAAAACCATCTCATCGACCGACAATAACAACAATAAAACC 356
Query 345 GGTCCCGGTACGGGAACCAGAGAAGAAATCACTACA-GAATACCGGAATCTCGTTAGATT 403
|||||||||||| | | ||||||||||||||| | ||| ||||||| |||| ||||||
Sbjct 357 GGTCCCGGTACGTGTATCAGAGAAGAAATCACCGGAGGAA-ACCGGAAGCTCGGTAGATT 415
Query 404 GCACAAGTTTCTTGAATCAAAA-CGGTTCCGGTTCATGCTCGAGAACAACT-CAACCAAA 461
|| ||||||||||||||||||| ||| || ||||| ||||| ||||| ||| ||| |
Sbjct 416 GCTCAAGTTTCTTGAATCAAAACCGG-TCTGGTTCTTGCTCAAGAAC-ACTGCAATCGGG 473
Query 462 TAATAATCAAAACCAAACCGAATCGAACCGGTCTTGTCCTGATTACTTCAAGTGGATCCA 521
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 474 TTATAATCAAAACCAAACCGAATCTAACCGGTCTTGTCCTGATTACTTCAAGTGGATTCA 533
Query 522 CGAGGATCTAAAACCATGGAGAGAAACAGGGATAACAAAAGAAATGGTGGAAAGAGGGAA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 534 CGAGGATCTAAAACCATGGAGAGAAACAGGGATAACAAAAGAAATGGTGGAAAGAGGCAA 593
Query 582 AACAACAGCGCATTTCAGGTTAGTTATTGTAAACGGCAAGGTGTTCGTGGAAAACTACAA 641
||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 594 AACTACAGCACATTTCAGGTTAGTTATTTTAAACGGCAAGGTGTTCGTCGAAAACTACAA 653
Query 642 GAAGTCTATACAGACTAGAGATGCGTTCACACTATGGGGGATTCTTCAGCTGCTGAGAAA 701
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAAGTCTATACAAACTAGAGATGCGTTCACACTATGGGGGATTCTTCAGCTGCTGAGAAA 713
Query 702 GTATCCAGGGAAGTTACCTGACGTGGATCTCATGTTTGACTGCGATGATCGACCAGTCAT 761
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 714 GTATCCAGGGAAGTTACCTGACGTGGATCTCATGTTTGACTGTGATGATCGACCAGTCAT 773
Query 762 TAGATCGGATGGTTATAATAGATCT-AATCGTACGGCTGAAG-ATGTACCACCTCCGTTA 819
||||||||| |||||||||| || | |||||||||| || || ||| |||||||||||
Sbjct 774 TAGATCGGACGGTTATAATATAT-TGAATCGTACGGTTG-AGAATGCGCCACCTCCGTTG 831
Query 820 TTTAGGTATTGCGGTGATAGATGGACGGTGGATATTGTCTTTCCCGATTGGTCATTTTGG 879
||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| |||
Sbjct 832 TTTAGATATTGCGGTGATAGGTGGACGGTGGATATCGTCTTTCCTGATTGGTCATTCTGG 891
Query 880 GGATGGCAGGAGATAAACATAAAGGAGTGGAGCAAAGTGTTgaaagaaatggaagaagga 939
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 892 GGATGGCAGGAGATAAACATAAGGGAGTGGAGCAAAGTGTTGAAAGAAATGGAAGAAGGA 951
Query 940 aagaagaagaagaaatttatggaaagagaGGCTTATGCATATTGGAAAGGGAACCCTTTT 999
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 952 AAGAAGAAGAAGAAATTTATGGAAAGAGACGCCTATGCATATTGGAAAGGGAACCCTTTT 1011
Query 1000 GTTGCATCTCCTTCAAGAGAAGATCTTCTCACTTGCAATTTATCCTCACTACATGATTGG 1059
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1012 GTTGCATCTCCTTCAAGAGAAGATCTCCTCACTTGCAATTTATCCTCACTACATGATTGG 1071
Query 1060 AATGCTAGAATTTTCATTCAGGATTGGATATCAGAAGGACAAAGAGGATTTGAGAATTCA 1119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AATGCTAGAATTTTCATTCAGGATTGGATATCAGAAGGACAAAGAGGATTTGAGAATTCG 1131
Query 1120 AATGTAGCAAATCAATGCACTTACAGGTACAAGATATATATAGAAGGGTATGCGTGGTCA 1179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1132 AATGTAGCAAATCAATGCACTTACAGGTACAAGATCTATATAGAAGGGTATGCGTGGTCA 1191
Query 1180 GTGAGTGAGAAATACATATTAGCATGTGACTCAGTCACATTGATGGTGAAACCTTATTAC 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GTGAGTGAGAAATACATATTAGCATGTGACTCAGTCACATTGATGGTGAAACCTTATTAC 1251
Query 1240 TATGATTTCTTCTCAAGAACTCTTCAACCTCTCCAACACTATTGGCCCATTAGGGATAAA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TATGATTTCTTCTCAAGAACTCTTCAACCTCTCCAACACTATTGGCCCATTAGGGATAAA 1311
Query 1300 GATAAATGTAGATCCATCAAATTTGCTGTTGATTGGCTTAATAATCACACTCAAAAGGCT 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GATAAATGTAGATCCATCAAATTTGCTGTTGATTGGCTTAATAATCACACTCAAAAGGCT 1371
Query 1360 CAAGAGATAGGAAGAGAAGCAAGTGAGTTCATGCAAAGAGATCTATCAATGGAAAATGTT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CAAGAGATAGGAAGAGAAGCAAGTGAGTTCATGCAAAGAGATCTATCAATGGAAAATGTT 1431
Query 1420 TATGATTATATGTTCCATTTGTTGAATGAATACTCCAAGCTTCTCAAGTACAAGCCTCAA 1479
|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1432 TATGATTACATGTTCCATCTGTTGAATGAATACTCCAAGCTTCTTAAGTACAAGCCTCAA 1491
Query 1480 GTTCCCAAGAATAGTGTTGATCTATGCACAGAAGCAATGGTGTGCCCTTCTGAAG---A- 1535
||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 1492 GTTCCAAAGAATAGTGTTGAGCTATGCACAGAAGCCTTGGTGTGCCCTTCTGAAGGGGAA 1551
Query 1536 --TGTTAATGGGGTTAATAA-AAGGTTTATGATGGGCTCTTTAGTTAGTAGGCCTCATAT 1592
||||||||||||| |||| || |||||||| ||||||||||||||||||||||||
Sbjct 1552 GATGTTAATGGGGTTGATAAGAAA-TTTATGATAGGCTCTTTAGTTAGTAGGCCTCATGC 1610
Query 1593 TTCCAGCCCATGTTCACTTCCTCCTCCTTTTGATTCCAATGGTCTTGAGAAGTTCCATAG 1652
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TTCTGGCCCATGTTCACTTCCTCCTCCTTTTGATTCCAATGGTCTTGAGAAGTTCCATAG 1670
Query 1653 GAAGAAATTGAATCTCATCCGGCAAGTGGAGAAATGGGAAGACTCTTACTGGCAAAAGGT 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 GAAGAAATTGAATCTCATCCGGCAAGTGGAGAAATGGGAAGACTCTTACTGGCAAAAGGT 1730
Query 1713 T-TAATAAAATGATAT 1727
| | |||| ||||||
Sbjct 1731 TCTG-TAAAGTGATAT 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85391127045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5