BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475012
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1212 0.0
> AT1G63310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G20362.1);
Has 78 Blast hits to 77 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:23486307-23487085
REVERSE LENGTH=779
Length=779
Score = 1212 bits (656), Expect = 0.0
Identities = 735/772 (95%), Gaps = 10/772 (1%)
Strand=Plus/Plus
Query 1 GGATTGCTTTGCCTTGGCATCTCTGCTTCT-GTTGATAAAAGAATGAAGCTAAGCGAGAC 59
|||||||||||||||||| | ||||||| | | |||| |||||||||||||||||||| |
Sbjct 1 GGATTGCTTTGCCTTGGCGTATCTGCTT-TGGGTGAT-AAAGAATGAAGCTAAGCGAGTC 58
Query 60 AAGAGGCGAAACAGAGAAGCACAGGCGCCAACAACATTTCGAGCACGAGCTTAAGAACAT 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 59 AAGAGGCGAAACAGAGAAGCACAGGCGACAACAACATTTCGAGCACGAGCTTAAGAACAT 118
Query 120 GATCTCTTCGTTAACCCACATGGGAGGAGATAAGGCAGGACCTAGCCAATACGATGAAGA 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GATCTCTTCCTTAACCCACATGGGAGGAGATAAGGCAGGACCTAGCCAATACGATGAAGA 178
Query 180 GGAGGATGGTATCAGAGTCATCACGCTTTCTGGATCCAACCTTGGAGCCACCATGAAGAC 239
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 GGAAGATGGTATCAGAGTCATCACACTTTCTGGATCCAACCTTGGAGCCACCATGAAGAC 238
Query 240 CGAGCTTGACAACAATCATGGAGACAGAGACAAAAATGGCGACCATGAGCTTGATTTCCT 299
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 239 CGAGCTTGACAACAATCATGGAGACAGAGACCAAAATGGCGACCACGAGCTTGATTTCCT 298
Query 300 CAGCACTTATGTTAATAGCAACTTCCAAGCTGTGAACAACTCGATTATGATAGGGGCCAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGCACTTATGTTAATAGCAACTTCCAAGCTGTGAACAACTCGATTATGATAGGGGCCAA 358
Query 360 GTACGAGACTCATGATCCTGGCGTTCATCTTGACATCTCGGGCGATGTGGAGAAACCTTC 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 GTACGAGACTCATGATCCTGGCGTTCATCTTGACATTTCGGGCGATGTGGAGAAACCTTC 418
Query 420 GGTGAAGATACCTGCGAGGAGTTCAAGGGGAAAGAAGGGTAAAACTCCTGCTAGGAGTGA 479
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 419 GGTGAAGATACCTGCGAGGAGTTCAAGGGGAAAGAAGGGTAAGACTCCTGCCAGAAGTGA 478
Query 480 CCGTCGAGAATCTGAACATACTAATTGAATGGTATGGTATCTTCATTGATCAGTATTAAT 539
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 479 CCGTCGAGAATCTGAACATACTAATTGAATGGTATGGTATATTCATGGATCAGTGTTAAT 538
Query 540 TCTCTTTT---ATTCTCTTGTCTTGCCTACTCTAAATAATCAGAGAAGTGGTGCATGCCA 596
|||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 TCTCTTTTTTTATTTTCTTGTCTTGCCTTCTCTAAATAATCAGAGAAGTGGTGCATGCCA 598
Query 597 AAGCACTTTACTTTCTCTTCGAGGTTGTTGTTTTCGCTTGCGCTTATTATTA--AA-CAT 653
||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 599 AAGCACTTTACTTTCTCTTCGAGGTTGTTGTTTTCGCTTGCGCTTCTTATTATCAAACAT 658
Query 654 GTTTCTATTTACAGTCTATTCTCAATATAAATAAATGTATGAAGCAGGGTGTGGTCAATC 713
||| |||| || |||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 659 GTT-CTATATATAGTCTATTCTCAATATAAATAAATGTATGAAGCATGGTGTGGTCGATC 717
Query 714 CTCTTAGATATGATTACTTGGTTGATGAGGGAATGTAGAGGCCATACCTTGT 765
||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 CTCTTTGATATGATTATTTGGTTGATGAGGGAATGTAGAGGCCATACCTTGT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5