BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475014
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63290.1 | Symbols: | Aldolase-type TIM barrel family prote... 1118 0.0
AT3G01850.1 | Symbols: | Aldolase-type TIM barrel family prote... 850 0.0
> AT1G63290.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr1:23471849-23473639 REVERSE LENGTH=979
Length=979
Score = 1118 bits (605), Expect = 0.0
Identities = 728/786 (93%), Gaps = 14/786 (2%)
Strand=Plus/Plus
Query 1 TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA 60
||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 32 TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA 91
Query 61 TCGGACTTTGCAAATCTTGCGGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG 120
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 92 TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG 151
Query 121 CTTCACATGGACATTATGGACGGGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTC 180
||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 152 CTTCACATGGACATTATGGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTC 211
Query 181 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 271
Query 241 CCCATGGATTACGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CCCATGGATTATGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 331
Query 301 GAGGTGGCCAAAGAGAATTGGCAAGAACTTGTGGAA-AAGATTAAGTCTGCTGGGATGAG 359
||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 332 GAGGTGGCCCAAGAGAATTGGCAAGAACTTGTG-AAGAAGATTAAGGCTGCTGGGATGAG 390
Query 360 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTTGAAGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 391 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTCGAAGG 450
Query 420 TACAAATCCGGTTGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TACAAATCCGGTCGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 510
Query 480 ATTCATGCCCAACATGATGGACAAGGTCCGGGCATTGAGGAACAAGTACCCAACACTTGA 539
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 511 GTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGAGGAACAAGTACCCAACACTTGA 570
Query 540 TATTGAGGTGGACGGTGGCTTAGGTCCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGC 599
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 571 TATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCGATGCAGCAGCTGCAGCTGGAGC 630
Query 600 CAACTGTATCGTCGCAGGAAGTTCGGTGTTTGGAGCTCCTGA-GCCTGGGGATGTCATAT 658
|||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct 631 CAACTGTATCGTCGCAGGAAGTTCAGTGTTTGGAGCTCC-GAAGCCTGGGGACGTCATAT 689
Query 659 CCCTTTTGTGGGCCAGTGTTAAGAAGGCGCAGCCATCCACTTAAGGGAGTGGGAGTGGGA 718
|||||||| |||| |||||| |||| || || || ||||||||||| ||| || | |
Sbjct 690 CCCTTTTGCGGGCTAGTGTTGAGAAAGCACAACCCTCCACTTAAGGAAGTTGGTGCCCTA 749
Query 719 ATGCCCCA--AGC-AATAACTGTAAG--AGTACTTTTTTATAATTCTTTGAAATGGAATA 773
| | | | ||| || || |||| | ||||||||||| |||||||||||||||||
Sbjct 750 A--CTCTATGAGCCAAGGTCT-TAAGCTAATACTTTTTTAT--TTCTTTGAAATGGAATA 804
Query 774 AATCTT 779
|| |||
Sbjct 805 AACCTT 810
Score = 100 bits (54), Expect = 2e-20
Identities = 110/134 (82%), Gaps = 15/134 (11%)
Strand=Plus/Plus
Query 781 AATCTGTCTCAGAGCTTTTGCCCTAGCGATGAACTTTCTCAAGAAAATCACCGCAGAT-- 838
||| ||||| ||||||||||||||||||||||| || | |||||||||||||| ||||
Sbjct 839 AATGTGTCTGAGAGCTTTTGCCCTAGCGATGAAATTCCACAAGAAAATCACCGGAGATAG 898
Query 839 -A------G---A-AACTT-TTGA-TATGTAGCAGTTACATTTTTGTCTATCAGACTTAA 885
| | | || || || | ||||||||||||||||||| |||||||||||||||
Sbjct 899 AATTTTTTGTTAAGAAATTGTTTATTATGTAGCAGTTACATTTTAGTCTATCAGACTTAA 958
Query 886 TTAGATAATCCAGA 899
||||||||||||||
Sbjct 959 TTAGATAATCCAGA 972
> AT3G01850.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr3:299987-302038 REVERSE LENGTH=1056
Length=1056
Score = 850 bits (460), Expect = 0.0
Identities = 606/677 (90%), Gaps = 8/677 (1%)
Strand=Plus/Plus
Query 28 GTGTCACCGAAGATCGCTCCGTCGATGTTGTCATCGGACTTTGCAAATCTTGCGGCGGAG 87
||||| ||||| || || ||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 55 GTGTCGCCGAAAATAGCACCGTCGATGCTGTCATCGGACTTCGCAAATCTAGCGGCGGAG 114
Query 88 GCTAAGCGGATGATCGATTTAGGCGCCAATTGGCTTCACATGGACATTATGGACGGGCAT 147
|| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 115 GCCAATCGGATGATCGATTTGGGCGCCAACTGGCTTCACATGGATATTATGGACGGGCAT 174
Query 148 TTTGTTCCGAATCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAAGCACACAAAT 207
||||| || ||||| |||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 175 TTTGTCCCTAATCTTACGATTGGTGCTCCTGTCATCGAGAGTTTGCGAAAGCACACTAAT 234
Query 208 GCATATCTTGATTGCCA-CTTAATGGTGACGAACCCCATGGATTACG-TGGATCAGATGG 265
||||||||||||||||| ||| ||||||||||||||||||||||||| || | |||||||
Sbjct 235 GCATATCTTGATTGCCACCTT-ATGGTGACGAACCCCATGGATTACGTTGCA-CAGATGG 292
Query 266 CTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCAAAGAGAATTGGCAAG 325
||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 293 CTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGGCAAC 352
Query 326 AACTTGTGGAAAAGATTAAGTCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAA 385
||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 353 AACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCTGGAA 412
Query 386 CACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGTACAAATCCGGTTGAAATGGTTCTTG 445
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 413 CACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGGACAACTCCGGTTGAAATGGTTCTTG 472
Query 446 TGATGACTGTGGAGCCTGGATTTGGAGGCCAGAAATTCATGCCCAACATGATGGACAAGG 505
|||||||||| || |||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 473 TGATGACTGTAGAACCTGGATTTGGAGGCCAGAAGTTTATGCCTGACATGATGGACAAGG 532
Query 506 TCCGGGCATTGAGG-AACAAGTACCCAACACTTGATATTGAGGTGGACGGTGGCTTAGGT 564
|||||||||||||| || || |||||||||||||||||| ||||||| || ||||||||
Sbjct 533 TCCGGGCATTGAGGCAAAAA-TACCCAACACTTGATATTCAGGTGGATGGCGGCTTAGGC 591
Query 565 CCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCG 624
||||| || ||||| ||||||||||||| || ||||||||||| || || ||||||||
Sbjct 592 CCTTCAACGATCGACACAGCGGCTGCAGCAGGCGCCAACTGTATTGTTGCTGGAAGTTCA 651
Query 625 GTGTTTGGAGCTCCTGAGCCTGGGGATGTCATATCCCTTTTGTGGGCCAGTGTTAAGAAG 684
|||||||||||||| ||||| || |||||||| |||||| || || |||||||| ||||
Sbjct 652 GTGTTTGGAGCTCCGGAGCCAGGAGATGTCATCTCCCTTCTGAGGACCAGTGTTGAGAAA 711
Query 685 GCGCAGCC-ATCCACTT 700
|| || || | ||||||
Sbjct 712 GCCCAACCCA-CCACTT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5