BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475018
Length=329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63280.1 | Symbols: | Serine protease inhibitor (SERPIN) fa... 468 2e-131
AT1G64035.1 | Symbols: | pseudogene, putative serpin, blastp m... 272 1e-72
> AT1G63280.1 | Symbols: | Serine protease inhibitor (SERPIN)
family protein | chr1:23471343-23471705 FORWARD LENGTH=363
Length=363
Score = 468 bits (253), Expect = 2e-131
Identities = 304/327 (93%), Gaps = 10/327 (3%)
Strand=Plus/Plus
Query 5 AGGCTGAACAAGTGCGTCGTGAGCTGAATAAATGGGCTTCCGATCACACCAATGGTCTCA 64
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 23 AGGCTGTACAAGTGCGTCAAGAGCTGAATAAGTGGGCTTCCGATCACACCAATGGTCTCA 82
Query 65 TCAGAGACCTTCTTCCTCCTGGATCCGTTAAAAGCGAAACCGTTCAGGTTTATGGAAACG 124
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 83 TCATAGACCTTCTTCCTCGTGGATCCGTTAAAAGCGAAACCGTTCAGGTTTATGGAAACG 142
Query 125 CATTGTACTTCAAAGGAGCATGGGAAAACAAATTTGACAAGTCTTTAACCAAA-ATCAAC 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 143 CATTGTACTTCAAAGGAGCATGGGAAAACAAATTTGACAAGTCTTCAACCAAAGA-CAAC 201
Query 184 AAGTTTCATCTACTCGATGGCAAACAAGTACATGTGCCTTTCATGAGAAGCTATAAAAGT 243
||||||| | | | |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 202 GAGTTTCACC-A----A-GGCAAAGAAGTACATGTGCCTTTCATGAGAAGCTATGAAAGT 255
Query 244 CAATATATCAA-GGCTTACGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGCCA 302
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 256 CAATATAT-AATGGCTTGCGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGCCT 314
Query 303 TGATGATACCAAACGAAAATTCTCAAT 329
|||||||||||||||||||||||||||
Sbjct 315 TGATGATACCAAACGAAAATTCTCAAT 341
> AT1G64035.1 | Symbols: | pseudogene, putative serpin, blastp
match of 55% identity and 1.1e-82 P-value to GP|26224736|gb|AAN76362.1||AY158152
serpin-like protein {Citrus x paradisi}
| chr1:23755496-23757736 REVERSE LENGTH=2241
Length=2241
Score = 272 bits (147), Expect = 1e-72
Identities = 272/330 (82%), Gaps = 18/330 (5%)
Strand=Plus/Plus
Query 9 TGAACAAGTGCGTCG-TGAGCTGAATAAATGGGC-TTCCGATCACACCAATGGTCTCATC 66
|||| |||||||| | ||| ||||| ||||| || || ||||||||||||| |||||
Sbjct 1518 TGAAGAAGTGCGT-GAGGAGGTGAATTCTTGGGCATTACG-TCACACCAATGGTATCATC 1575
Query 67 AGAGACCTTCTTCCTCCTGGATCCGTTAAAAGCGAAACCGTTCAGG-TTTATGGAAACGC 125
| ||| ||||| |||||||||||||||| |||||||||| || || |||||||||||||
Sbjct 1576 AAAGATCTTCTACCTCCTGGATCCGTTACAAGCGAAACC-TTGTGGATTTATGGAAACGC 1634
Query 126 ATTGTACTTCAAAGGAGCATGGGAAAACAAATT-TGACAAGTCTTTAACCAAA-ATCAAC 183
|||||||||||||||||| |||||| ||||||| | | ||||| | || ||| | |||
Sbjct 1635 ATTGTACTTCAAAGGAGCCTGGGAAGACAAATTCT-ATAAGTCAATGACGAAACA-CAA- 1691
Query 184 AAGTTTC-ATCTACTCGATGGCAAACAAGTACATGTGCCTTTCATG-AGAAGCT-ATAAA 240
| |||| | || || |||||||||||||||||||||| |||||| | ||||| | |||
Sbjct 1692 ACCTTTCTACCTTGTCAATGGCAAACAAGTACATGTGCCATTCATGCA-AAGCTCACAAA 1750
Query 241 AGTCAATATATCAAGGCTTACGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGC 300
|||||||| | ||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 1751 -GTCAATATGTTAAGGCTTACGATGGTTTCAAGGTCCTTAGACAACCATACCGACAAGGC 1809
Query 301 CATGATGATACCAAA-CGAAAATTCTCAAT 329
| ||||||| || || ||||||||||
Sbjct 1810 GTTAATGATAC-AAGTCGCCAATTCTCAAT 1838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15331663445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5