BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475021
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63240.1 | Symbols: | unknown protein; Has 460 Blast hits t... 2761 0.0
> AT1G63240.1 | Symbols: | unknown protein; Has 460 Blast hits
to 413 proteins in 106 species: Archae - 5; Bacteria - 12;
Metazoa - 152; Fungi - 46; Plants - 43; Viruses - 2; Other Eukaryotes
- 200 (source: NCBI BLink). | chr1:23456021-23458661
REVERSE LENGTH=1925
Length=1925
Score = 2761 bits (1495), Expect = 0.0
Identities = 1672/1759 (95%), Gaps = 6/1759 (0%)
Strand=Plus/Plus
Query 1 CTTCTTCTGTCTTTCTCAGACACACACAGTGACAAAACCTGGTCACCGGCAAAAAATA-A 59
||||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||| | |
Sbjct 18 CTTCTTCTGTCGTTCTCAGAAACACAGAGTGTCAAAACCTGGTCACCGG-AAAAAAAATA 76
Query 60 AACTCTGTTTCCAGACCGAATTTTCTCACCGGAAAATGTTACGTCAGCTTCCACCAACTA 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AACTCTGTTTTCAGACCGAATTTTCTCACCGGAAAATGTTACGTCAGCTTCCACCAACTA 136
Query 120 TTACGGCGGACGCCACGCCGGATTGGCTTCCCGTCGGTTGGATTGCTCACTCTACAGTTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TTACGGCGGACGCCACGCCGGATTGGCTTCCCGTCGGTTGGATTGCTCACTCTACAGTTC 196
Query 180 TAAAACGCGGTCGTCAAACTAAGACATACACGCAATTGAGAACAGGGAAAAAGTTATCTA 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 197 TAAAACGCGGTCGTCAAACTAGGACATACACGCAATTGAGAACAGGGAAAAAGTTATCTA 256
Query 240 CAAAGGATCAAGTTCTTGAGTACATAAAAATGGAGAAAATTCGAGAAAAACGAGAAGCAG 299
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 257 CAAAGGATCAAGTTCTTGAGTACATTAAAATGGAGAAAATACGAGAAAAACGAGAAGCAG 316
Query 300 GAATCCAGAGGAATAAAGCAAGTTTAAAAGCCTTACAAGATAGAGAGACCGCAAGCGAAA 359
||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 317 GAATCAAGAGGAATAAAGCAAGTTTAAAAGCCTTACAAGATAAAGAGACCGCAAGTGAAA 376
Query 360 GGCCGTCGTGGCTTCCGGATGAAAGGAAACCAGAGTTGGGGATTGGTTCTGTTAGTGGAC 419
||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||
Sbjct 377 GGCCGTCGTGGCTTCCGGATGAAAGGAAAGCAGAGTTGGAGATTGGTTATGTTGGTGGAA 436
Query 420 ACCCTTACAAGATGAATGTGAACACATCAAATGATTTTAAAACCAATCCAAAGGAGACAG 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 437 ACCCTTACAAGATGAATGTGAACACATCAAATGATTTTAACACCAATCCAAAGGAGACAG 496
Query 480 TGGTATTAGATGAGAACACTATAGAATCTGAAGATTCATCGGGTGAAGAATACGGAACCG 539
||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 497 TGGTATTAGATGAGAACTCTATGGAATCTGAAGATTCATCGGGTGAAGTATACGAAACCG 556
Query 540 GGTGTAATGAAATTACGTATGCAATTGACGAGGATGAAGAAGATTTTTCAGAGAGGGAAT 599
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 557 GGTGTAATGAAATTACTTATGCAATTGAGGAGGATGAAGAAGATTTTTCAGAGAGGGAAT 616
Query 600 ATGTCGAAAATGTGGAGAATTTCTCTAACATAACCTCTACTCCTCTACGGTCACAGCCAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 ATGTCGAAAATGTGGAGAATTTCTCTAACATAACCTCTACTCCTCTACGGTCACAGCCAG 676
Query 660 AAAGAATGCAGAAATTGGAGTCTCGAGCAAAAACGCAATGTGTGTTTGAAGATGAGGATA 719
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 677 AAAGAATGCAGAAATTGGAGTCTCGAGCAAAAACACAATGTGTGTTTGAAGATGAGGATC 736
Query 720 TGAGTAGTGACAGTGACAACAAACTTCCAGAAGCTGAGATTTCAAAAGAAGGAAATGGTT 779
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 737 TGAGTAGTGACAGTGACAACAAACTTCCAGAAGCTGAGACTTCAAAAGAAGGAAATGGTT 796
Query 780 TGGGAGAGGCTCGTATTGTATCTAACCTAGTTGAGTCTTTTGAAGATAAGAAC-TCGCAT 838
||||||||| || | |||||||||||||||| |||||||||||| | || ||| ||||||
Sbjct 797 TGGGAGAGGGTCATGTTGTATCTAACCTAGTCGAGTCTTTTGAAAAGAA-AACCTCGCAT 855
Query 839 GATGTTGTGGTTGAGTGTGATGATAAGGCGAGGGAGATCCCGGGTTTGACTGGGTCATTA 898
| |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 856 GGTGTTATGGTTGAGTGTGATGATAAGGCGAGGGAGATCCCCGGTTTGACTGGATCATTA 915
Query 899 ACTGTTGAAATCAACCTGGACTGTGAACCTGCAAGTGATAGTTTGGTAGAGAAGAATTGG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 ACTGTTGAAATCAACCTGGACTGTGAACCTGCAAGTGATAGTTTGGTAGAGAAGAATTGG 975
Query 959 AAGAAAAGTGGGAGCGAAGGAATAGGAACAAGAAACATTGAGATCATTGACCTAGAGAGT 1018
|| ||||||| |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 976 AATAAAAGTGAGAGCGATGAAACAGGAACAAGAAACATTGAGATCATTGACCTAGAGAGT 1035
Query 1019 GACGTGATTCACATAAGTGGCTCATCAAAAGTTGTTGAAGTGACTCGGGAATCTGGCGAT 1078
||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 1036 GACGTGATTCACATAAGTGGCTCATCAAAAGCTGTTGAAGTGACTCAGGAATCAGGCGAT 1095
Query 1079 ACAAGTAAAGAGCCTCTGAAAGCTCAGGAAGAACCTGATAACGAGTGGGGAAAATCGGTC 1138
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 1096 ACAAGTAAAGAGCCTCTGAAAGCTCAGGAAGAACCTGATAACGACTGGAGAAGTTCGGTC 1155
Query 1139 TTCTTTCCAAACAGAGAAGCCCCTTCACATTCTGTACTTGTCTTTGAAAATTCTAATGCT 1198
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1156 TTCTTTCCAGACAGAGAAGCCCCTTCACATTCTGTACTTGTCTTTGAAAGTTCTAATGCT 1215
Query 1199 AGATCATCTGTAGAAGATCTTAGCAACACCATTGAGCTTGGTTTAAACCCGCAAGAAAAG 1258
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1216 AGACCATCTGTAGAAGATCTTAGCAACACCATTGAGCTTGGTTTAACCCCGCAAGAGAAG 1275
Query 1259 AACATCAGTGGCTCTAAAAAGCGGAAGAAGAATACGGAAACATGTTCATCTACGAACACC 1318
||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |
Sbjct 1276 AACATCAGTAGCTCTAAAAAGCGGAAGAAGAATACGGAAAGATGTGCATCTAAGAACATC 1335
Query 1319 AAGAAGAAAGGCATTGAAGCACCAACTAAAAAACTTCAGAAAGGCAAGACACCACCAAGC 1378
|||||||||||||||||||||||| | | ||||||||||| |||||| |||||| |||||
Sbjct 1336 AAGAAGAAAGGCATTGAAGCACCATCCAGAAAACTTCAGAGAGGCAAAACACCATCAAGC 1395
Query 1379 AAACCGCATGGCAAGACGGGAAGTTCAAGTGTAATG-ATGGACAAAAACCCTAATGATTG 1437
||| |||||||||||| ||||||||| |||||| | ||||||||||| ||| |||||||
Sbjct 1396 AAATCGCATGGCAAGAAGGGAAGTTCGAGTGTAG-GCATGGACAAAAAACCTGATGATTG 1454
Query 1438 GCTTAAACCGTGCCCAAACTTCCCATTTGAGCCACTCACAAGATCATTTCAAGTAGAGGA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 GCTTAAACCGTGCCCAAACTTCCCATTTGAGCCACTCACAAGATCATTTCAAGTAGAGGA 1514
Query 1498 TGACTCGGTAATCCGCATGTACTTAGAGCAACACTTTACAGCTCCAGGGAGTGCTGATAG 1557
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1515 TGACTCGGCAATCCGCATGTACTTAGAGCAACACTTTGCAGCTCCTGGGAGTGCTGATAG 1574
Query 1558 TAATCTACCTTTACCCGATTTCGGATTGCCAACCTTCTCCAACATCAAAATCTCACTGAA 1617
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1575 TAATCTACCTTTACCCGATTTCGGATTGCCTACCTTCTCCGACATCAAAATCTCACTTAA 1634
Query 1618 TGAAGAACCTGCATCCAAGAAAAAGAAGTCTCCTGATCCTCCATGTGTACAAGTTGCAAG 1677
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 TGAAGAACCTGCATTCAAGAAAAAGAAGTCTCCTGATCCTCCATGTGTACAAGTTGCAAG 1694
Query 1678 TTCAAGCTTACCTAGTTGCAGTTCCATGGGTACTAGTATGCTACAAACAGTTGCAGGACA 1737
||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1695 TTCAAACATACCTAGTTGCAGTTCCATGGGTACTAGTATGCTACCAACAGTTGCAGGACA 1754
Query 1738 CTAAAGAGACACTGAGACT 1756
|||||||||||||||||||
Sbjct 1755 CTAAAGAGACACTGAGACT 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86846942850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5