BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475021 Length=1756 Score E Sequences producing significant alignments: (Bits) Value AT1G63240.1 | Symbols: | unknown protein; Has 460 Blast hits t... 2761 0.0 > AT1G63240.1 | Symbols: | unknown protein; Has 460 Blast hits to 413 proteins in 106 species: Archae - 5; Bacteria - 12; Metazoa - 152; Fungi - 46; Plants - 43; Viruses - 2; Other Eukaryotes - 200 (source: NCBI BLink). | chr1:23456021-23458661 REVERSE LENGTH=1925 Length=1925 Score = 2761 bits (1495), Expect = 0.0 Identities = 1672/1759 (95%), Gaps = 6/1759 (0%) Strand=Plus/Plus Query 1 CTTCTTCTGTCTTTCTCAGACACACACAGTGACAAAACCTGGTCACCGGCAAAAAATA-A 59 ||||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||| | | Sbjct 18 CTTCTTCTGTCGTTCTCAGAAACACAGAGTGTCAAAACCTGGTCACCGG-AAAAAAAATA 76 Query 60 AACTCTGTTTCCAGACCGAATTTTCTCACCGGAAAATGTTACGTCAGCTTCCACCAACTA 119 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 AACTCTGTTTTCAGACCGAATTTTCTCACCGGAAAATGTTACGTCAGCTTCCACCAACTA 136 Query 120 TTACGGCGGACGCCACGCCGGATTGGCTTCCCGTCGGTTGGATTGCTCACTCTACAGTTC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 TTACGGCGGACGCCACGCCGGATTGGCTTCCCGTCGGTTGGATTGCTCACTCTACAGTTC 196 Query 180 TAAAACGCGGTCGTCAAACTAAGACATACACGCAATTGAGAACAGGGAAAAAGTTATCTA 239 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 197 TAAAACGCGGTCGTCAAACTAGGACATACACGCAATTGAGAACAGGGAAAAAGTTATCTA 256 Query 240 CAAAGGATCAAGTTCTTGAGTACATAAAAATGGAGAAAATTCGAGAAAAACGAGAAGCAG 299 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 257 CAAAGGATCAAGTTCTTGAGTACATTAAAATGGAGAAAATACGAGAAAAACGAGAAGCAG 316 Query 300 GAATCCAGAGGAATAAAGCAAGTTTAAAAGCCTTACAAGATAGAGAGACCGCAAGCGAAA 359 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 317 GAATCAAGAGGAATAAAGCAAGTTTAAAAGCCTTACAAGATAAAGAGACCGCAAGTGAAA 376 Query 360 GGCCGTCGTGGCTTCCGGATGAAAGGAAACCAGAGTTGGGGATTGGTTCTGTTAGTGGAC 419 ||||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||||| Sbjct 377 GGCCGTCGTGGCTTCCGGATGAAAGGAAAGCAGAGTTGGAGATTGGTTATGTTGGTGGAA 436 Query 420 ACCCTTACAAGATGAATGTGAACACATCAAATGATTTTAAAACCAATCCAAAGGAGACAG 479 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 437 ACCCTTACAAGATGAATGTGAACACATCAAATGATTTTAACACCAATCCAAAGGAGACAG 496 Query 480 TGGTATTAGATGAGAACACTATAGAATCTGAAGATTCATCGGGTGAAGAATACGGAACCG 539 ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||| Sbjct 497 TGGTATTAGATGAGAACTCTATGGAATCTGAAGATTCATCGGGTGAAGTATACGAAACCG 556 Query 540 GGTGTAATGAAATTACGTATGCAATTGACGAGGATGAAGAAGATTTTTCAGAGAGGGAAT 599 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 557 GGTGTAATGAAATTACTTATGCAATTGAGGAGGATGAAGAAGATTTTTCAGAGAGGGAAT 616 Query 600 ATGTCGAAAATGTGGAGAATTTCTCTAACATAACCTCTACTCCTCTACGGTCACAGCCAG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 ATGTCGAAAATGTGGAGAATTTCTCTAACATAACCTCTACTCCTCTACGGTCACAGCCAG 676 Query 660 AAAGAATGCAGAAATTGGAGTCTCGAGCAAAAACGCAATGTGTGTTTGAAGATGAGGATA 719 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 677 AAAGAATGCAGAAATTGGAGTCTCGAGCAAAAACACAATGTGTGTTTGAAGATGAGGATC 736 Query 720 TGAGTAGTGACAGTGACAACAAACTTCCAGAAGCTGAGATTTCAAAAGAAGGAAATGGTT 779 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 737 TGAGTAGTGACAGTGACAACAAACTTCCAGAAGCTGAGACTTCAAAAGAAGGAAATGGTT 796 Query 780 TGGGAGAGGCTCGTATTGTATCTAACCTAGTTGAGTCTTTTGAAGATAAGAAC-TCGCAT 838 ||||||||| || | |||||||||||||||| |||||||||||| | || ||| |||||| Sbjct 797 TGGGAGAGGGTCATGTTGTATCTAACCTAGTCGAGTCTTTTGAAAAGAA-AACCTCGCAT 855 Query 839 GATGTTGTGGTTGAGTGTGATGATAAGGCGAGGGAGATCCCGGGTTTGACTGGGTCATTA 898 | |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 856 GGTGTTATGGTTGAGTGTGATGATAAGGCGAGGGAGATCCCCGGTTTGACTGGATCATTA 915 Query 899 ACTGTTGAAATCAACCTGGACTGTGAACCTGCAAGTGATAGTTTGGTAGAGAAGAATTGG 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 ACTGTTGAAATCAACCTGGACTGTGAACCTGCAAGTGATAGTTTGGTAGAGAAGAATTGG 975 Query 959 AAGAAAAGTGGGAGCGAAGGAATAGGAACAAGAAACATTGAGATCATTGACCTAGAGAGT 1018 || ||||||| |||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 976 AATAAAAGTGAGAGCGATGAAACAGGAACAAGAAACATTGAGATCATTGACCTAGAGAGT 1035 Query 1019 GACGTGATTCACATAAGTGGCTCATCAAAAGTTGTTGAAGTGACTCGGGAATCTGGCGAT 1078 ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct 1036 GACGTGATTCACATAAGTGGCTCATCAAAAGCTGTTGAAGTGACTCAGGAATCAGGCGAT 1095 Query 1079 ACAAGTAAAGAGCCTCTGAAAGCTCAGGAAGAACCTGATAACGAGTGGGGAAAATCGGTC 1138 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| Sbjct 1096 ACAAGTAAAGAGCCTCTGAAAGCTCAGGAAGAACCTGATAACGACTGGAGAAGTTCGGTC 1155 Query 1139 TTCTTTCCAAACAGAGAAGCCCCTTCACATTCTGTACTTGTCTTTGAAAATTCTAATGCT 1198 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1156 TTCTTTCCAGACAGAGAAGCCCCTTCACATTCTGTACTTGTCTTTGAAAGTTCTAATGCT 1215 Query 1199 AGATCATCTGTAGAAGATCTTAGCAACACCATTGAGCTTGGTTTAAACCCGCAAGAAAAG 1258 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1216 AGACCATCTGTAGAAGATCTTAGCAACACCATTGAGCTTGGTTTAACCCCGCAAGAGAAG 1275 Query 1259 AACATCAGTGGCTCTAAAAAGCGGAAGAAGAATACGGAAACATGTTCATCTACGAACACC 1318 ||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||| | Sbjct 1276 AACATCAGTAGCTCTAAAAAGCGGAAGAAGAATACGGAAAGATGTGCATCTAAGAACATC 1335 Query 1319 AAGAAGAAAGGCATTGAAGCACCAACTAAAAAACTTCAGAAAGGCAAGACACCACCAAGC 1378 |||||||||||||||||||||||| | | ||||||||||| |||||| |||||| ||||| Sbjct 1336 AAGAAGAAAGGCATTGAAGCACCATCCAGAAAACTTCAGAGAGGCAAAACACCATCAAGC 1395 Query 1379 AAACCGCATGGCAAGACGGGAAGTTCAAGTGTAATG-ATGGACAAAAACCCTAATGATTG 1437 ||| |||||||||||| ||||||||| |||||| | ||||||||||| ||| ||||||| Sbjct 1396 AAATCGCATGGCAAGAAGGGAAGTTCGAGTGTAG-GCATGGACAAAAAACCTGATGATTG 1454 Query 1438 GCTTAAACCGTGCCCAAACTTCCCATTTGAGCCACTCACAAGATCATTTCAAGTAGAGGA 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1455 GCTTAAACCGTGCCCAAACTTCCCATTTGAGCCACTCACAAGATCATTTCAAGTAGAGGA 1514 Query 1498 TGACTCGGTAATCCGCATGTACTTAGAGCAACACTTTACAGCTCCAGGGAGTGCTGATAG 1557 |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1515 TGACTCGGCAATCCGCATGTACTTAGAGCAACACTTTGCAGCTCCTGGGAGTGCTGATAG 1574 Query 1558 TAATCTACCTTTACCCGATTTCGGATTGCCAACCTTCTCCAACATCAAAATCTCACTGAA 1617 |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || Sbjct 1575 TAATCTACCTTTACCCGATTTCGGATTGCCTACCTTCTCCGACATCAAAATCTCACTTAA 1634 Query 1618 TGAAGAACCTGCATCCAAGAAAAAGAAGTCTCCTGATCCTCCATGTGTACAAGTTGCAAG 1677 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1635 TGAAGAACCTGCATTCAAGAAAAAGAAGTCTCCTGATCCTCCATGTGTACAAGTTGCAAG 1694 Query 1678 TTCAAGCTTACCTAGTTGCAGTTCCATGGGTACTAGTATGCTACAAACAGTTGCAGGACA 1737 ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1695 TTCAAACATACCTAGTTGCAGTTCCATGGGTACTAGTATGCTACCAACAGTTGCAGGACA 1754 Query 1738 CTAAAGAGACACTGAGACT 1756 ||||||||||||||||||| Sbjct 1755 CTAAAGAGACACTGAGACT 1773 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86846942850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5