BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475028
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63190.1 | Symbols: | Cystatin/monellin superfamily protein... 835 0.0
> AT1G63190.1 | Symbols: | Cystatin/monellin superfamily protein
| chr1:23431835-23433002 FORWARD LENGTH=678
Length=678
Score = 835 bits (452), Expect = 0.0
Identities = 612/686 (89%), Gaps = 24/686 (3%)
Strand=Plus/Plus
Query 1 ATGGGTGACTTTGAAGGCTGGACT-AAGTGGCTGGTACCAGGGTTTCTGCTGTGGAAACC 59
||| |||| ||||||||||||| | || ||||| | ||||| |||| |||||||||||||
Sbjct 1 ATGAGTGAATTTGAAGGCTGGA-TCAAATGGCTCGAACCAGTGTTTTTGCTGTGGAAACC 59
Query 60 AGAGGATCCTGGCTATGAGAGACCTGCGTACAGGGATTGGACCGAGGAGGAGGATGAGCC 119
||||||||||||||||||||||| ||||| |||||||||||| | ||||| ||||||||
Sbjct 60 TGAGGATCCTGGCTATGAGAGACCAGCGTATAGGGATTGGACCAAAGAGGAAGATGAGCC 119
Query 120 TAAGTACTCACCAAAGGAAGAACTTGCCTTACTCGACAAACAAATCCTTGCAAGCGATGG 179
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAAGTACTCACCAGAGAAAGAACTTGCCTTACTCGACAAACAAATCCTTGCAAGCGATGG 179
Query 180 GTTTGATATCGACTACACACACTTCCGGTGTGTCTTCAACTACCATCTTGCTTATCTCGA 239
||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 180 TTTTGATATCGACTTCACACACTTCCGTTGTGTATTCAATTACCATCTTGCTTATCTCGA 239
Query 240 CTCAGATGAATTCGCTGAGGAGCCAACAGAAACCACTAGGGATTTACTCGAGAGGCTCTC 299
||| ||||||||| ||| ||| | |||||||||| || ||||||||||||||||||||
Sbjct 240 TTCACATGAATTCGTTGATGAG-C--CAGAAACCACAAGAGATTTACTCGAGAGGCTCTC 296
Query 300 TAGGAAGGCCCTTGATGACCACAATCTCGAAT-ATGGAACAGAATTTGAGTTTGTCAAGG 358
||||||||||||||||||| |||||| |||| | ||||| ||||||||||||||||||
Sbjct 297 TAGGAAGGCCCTTGATGACTACAATCAAGAATCA-AGAACACAATTTGAGTTTGTCAAGG 355
Query 359 TTGTGAAAGCCAACTTTCACTGGTGTTGTGC-ATATATGTTTCTCATAACATTTGAAGTT 417
|||||||||| |||||||||| |||||||| || ||||||||||||||| || ||||||
Sbjct 356 TTGTGAAAGCAAACTTTCACTTTTGTTGTGCGAT-TATGTTTCTCATAACCTTCGAAGTT 414
Query 418 GTTGATCCTTATGATAACTTGATAAAACTCTTCCAAACAAGGGTTCGCTACG-AGACAGA 476
||||| ||||||||||||||||| |||||||||||||||||||||||| ||| || |||
Sbjct 415 GTTGACCCTTATGATAACTTGATCAAACTCTTCCAAACAAGGGTTCGCCACGCTGA-AGA 473
Query 477 TATCGTGACTGAGTATGTCTTCTGCAGGCCGAAACCCAATCAAGGAGTGGAATGCATTGG 536
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 474 TATCGTGACTGAGTACGTCTTTTGCAGGCCGAAACCCAATCAAGGAGTGGAATGCATTGG 533
Query 537 TGTGAAGAACAATGATGTTGTTGGGAAAGATGTCCAAAACAA-TGTCAAGAAACAAAAGA 595
||||||||||||||||| | | ||||||||||||| ||| ||||||| ||||| |||
Sbjct 534 TGTGAAGAACAATGATG--G--G--AAAGATGTCCAAA-CAAATGTCAAGGAACAAGAGA 586
Query 596 TTCCTTGTATGTATGGATGGTTTTTAACAGTTATCGGC-T----TTCTCTTTACAGATTG 650
||||||||||||||||||||||||||| ||| ||| | | ||| ||||||||||||
Sbjct 587 TTCCTTGTATGTATGGATGGTTTTTAAGAGTAATCACCATCACCTTCACTTTACAGATTG 646
Query 651 GAGTATGAGCTTCTATATGCCACAAG 676
||||| ||||||||||||||||||||
Sbjct 647 GAGTAGGAGCTTCTATATGCCACAAG 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5