BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475030
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63180.1 | Symbols: UGE3 | UDP-D-glucose/UDP-D-galactose 4-e... 2329 0.0
AT1G12780.1 | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galac... 1190 0.0
> AT1G63180.1 | Symbols: UGE3 | UDP-D-glucose/UDP-D-galactose 4-epimerase
3 | chr1:23427409-23429603 REVERSE LENGTH=1425
Length=1425
Score = 2329 bits (1261), Expect = 0.0
Identities = 1376/1430 (96%), Gaps = 14/1430 (1%)
Strand=Plus/Plus
Query 1 AAACCCTCACGAATTCAAGAAACCAAACAAAAGaaaaaaaaGCTCTCTCTTTCTCTACCT 60
|||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||
Sbjct 1 AAACCCTCACGAATTCAAGAAACCAATCAAAAG-CAAAAAAGCTTTCTCTTTCTCTACCT 59
Query 61 TTTTCCTTAATTTTACTTTTGCGGCGTCGTTCTTATCTACTCACAAGAAGGCAACCGATC 120
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 TTTTCCTTAATTTCACTTTTGCGGCGTCGTTCTTATCTACTCACAAGAAAGCAACCGATC 119
Query 121 -AATAACTCCCA-AATTAAAGAAAGACTCAAAC-TT-TTCTCTCTCTCTTTCTTAAATAG 176
||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 120 AAATAACTCCCAGAA-TAAAGAAAGACTCAAACTTTATTCTCTCTCTCTTTCTTAAATAG 178
Query 177 TGAAGAAAGCTTCGATTTTGGGAAGTGGGTTTG-T-GTAAAAATGGGTTCTTCTGTGGAA 234
||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 179 TGAAGAAAGCTTCGATTTTGGGAAGTGGGTTTGTTCG-AAAAATGGGTTCTTCTGTGGAA 237
Query 235 CAGAACATTTTGGTGACTGGTGGTGCTGGATTCATTGGAACACATACTGTTGTTCAGCTT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAGAACATTTTGGTGACTGGTGGTGCTGGATTCATTGGAACACATACTGTTGTTCAGCTT 297
Query 295 TTGAATCAGGGTTTTAAGGTTACGATCATTGATAATCTTGATAACTCTGTCGTTGAAGCT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGAATCAGGGTTTTAAGGTTACGATCATTGATAATCTTGATAACTCTGTCGTTGAAGCT 357
Query 355 GTTCATAGGGTTAGGGAACTTGTTGGTCCTGATCTCTCTACCAAGCTTGAATTCAATCTG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTTCATAGGGTTAGGGAACTTGTTGGTCCTGATCTCTCTACCAAGCTTGAATTCAATCTG 417
Query 415 GGTGATCTAAGAAACAAAGGAGATATTGAGAAACTCTTTTCTAATCAGAGATTTGATGCT 474
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 GGTGATCTAAGAAACAAAGGAGATATTGAGAAACTCTTTTCCAATCAGAGATTTGATGCT 477
Query 475 GTGATTCACTTTGCTGGTCTTAAAGCTGTGGGAGAAAGTGTTGGAAACCCTCGTCGTTAC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTGATTCACTTTGCTGGTCTTAAAGCTGTGGGAGAAAGTGTTGGAAACCCTCGTCGTTAC 537
Query 535 TTTGATAATAACTTAGTTGGAACTATCAATCTATATGAAACCATGGCAAAATACAACTGC 594
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 TTTGATAATAACTTAGTTGGAACTATCAATCTATATGAGACCATGGCAAAATACAACTGC 597
Query 595 AAAATGATGGTGTTTTCGTCGTCTGCAACGGTTTATGGCCAACCTGAAATAGTCCCATGT 654
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 598 AAAATGATGGTGTTTTCGTCGTCTGCAACAGTTTATGGTCAACCTGAAATAGTCCCATGT 657
Query 655 GTGGAAGACTTTGAGTTACAGGCTATGAATCCTTATGGTCGTACTAAGCTGTTTCTTGAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTGGAAGACTTTGAGTTACAGGCTATGAATCCTTATGGTCGTACTAAGCTGTTTCTTGAA 717
Query 715 GAGATAGCTAGAGACATTCATGCTGCAGAACCAGAATGGAAGATAATTCTTCTGAGGTAC 774
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GAGATAGCTAGAGACATTCACGCTGCGGAACCAGAATGGAAGATAATTCTTCTGAGGTAC 777
Query 775 TTCAATCCGGTTGGAGCTCATGAGAGTGGAAGAATTGGAGAAGATCCAAAGGGCATACCG 834
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTCAATCCGGTTGGAGCTCACGAGAGTGGAAGAATTGGAGAAGATCCAAAGGGCATACCG 837
Query 835 AATAATCTCATGCCTTATATCCAACAAGTTGCGGTTGGACGATTACCTGAACTCAATGTA 894
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 838 AATAATCTCATGCCTTATATCCAACAAGTGGCGGTTGGAAGATTACCTGAACTCAATGTA 897
Query 895 TATGGACATGACTATCCTACTATGGATGGCAGCGCGGTCAGAGACTACATCCATGTAATG 954
| ||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 898 TTTGGACATGATTATCCTACCATGGATGGTAGCGCGGTTAGAGACTACATCCATGTAATG 957
Query 955 GATTTAGCAGATGGCCATGTGGCTGCATTAAACAAGTTGTTTTCAGACTCAAAGATTGGC 1014
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 958 GATTTAGCAGATGGCCATGTGGCTGCGTTAAACAAATTGTTTTCAGACTCAAAGATTGGC 1017
Query 1015 TGTACTGCTTATAATCTTGGGACTGGTCAAGGAACTTCTGTCTTAGAAATGGTTTCTGCT 1074
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1018 TGTACTGCTTATAATCTTGGCACTGGTCAAGGAACTTCTGTCTTAGAAATGGTTTCTTCT 1077
Query 1075 TTTGAAAAAGCTTCTGGCAAGAAAATCCCTATCAAGCTATGTCCAAGAAGAGCTGGAGAT 1134
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 TTTGAAAAAGCTTCTGGCAAGAAAATACCTATCAAGCTATGTCCAAGAAGAGCTGGAGAT 1137
Query 1135 GCAACAGCTGTTTATGCTTCAACTGAGAAAGCTGAGAAAGAACTCGGATGGAAGGCAAAG 1194
|||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||
Sbjct 1138 GCAACAGCTGTTTATGCTTCAACTCAGAAAGCTGAGAAGGAACTTGGCTGGAAGGCAAAA 1197
Query 1195 TATGGAGTTGATGAGATGTGCAGAGATCAATGGAACTGGGCAGATAAGAATCCATGGGGT 1254
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 TATGGAGTTGATGAGATGTGCAGAGATCAATGGAACTGGGCAAATAAGAATCCATGGGGT 1257
Query 1255 TTCCAGAAAAAGCCTTGAAATGtttttttttttGTTTCACCATTCAAATATAAAGAAAAA 1314
|||||||| ||||||||| || |||| |||| ||||||||| |||| ||||||||||||
Sbjct 1258 TTCCAGAAGAAGCCTTGAT-TGATTTTGTTTT-GTTTCACCACTCAA-TATAAAGAAAAA 1314
Query 1315 TATA--TATAGATGTCGATTTATTTTCCTGCATCTATTTTATTTCTCTCTTCaaaaaaaG 1372
| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1315 AAAAGATATAGATGTCGTTTTATTTTCCTGCATCTATTTGATTTCTCTCTTCAAAAAAAG 1374
Query 1373 TTGTATTGAACTCTTCATCTTTCGGTTAATAAAGTATAAAGTTTATCTAC 1422
||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1375 TTGTATTGAACTCGTCATCTTTCGGTTAATAAAGTATAAAGTTTATCTAC 1424
> AT1G12780.1 | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galactose
4-epimerase 1 | chr1:4355926-4358328 REVERSE LENGTH=1462
Length=1462
Score = 1190 bits (644), Expect = 0.0
Identities = 939/1083 (87%), Gaps = 14/1083 (1%)
Strand=Plus/Plus
Query 215 AAATGGGTTCTTCTGTGGAACAGAACATT-TTGGTGACTGGTGGTGCTGGATTCATTGGA 273
||||||||||||||||||| ||||||||| || || |||||||||||||| || || ||
Sbjct 207 AAATGGGTTCTTCTGTGGAGCAGAACATTCTT-GTTACTGGTGGTGCTGGCTTTATCGGG 265
Query 274 ACACATACTGTTGTTCAGCTTTTGAATCAGGGTTTTAAGGTTACGATCATTGATAATCTT 333
|| |||||||||||||| ||| | || | |||||||||||| ||||||| |||||| ||
Sbjct 266 ACGCATACTGTTGTTCAACTTCTCAAAGATGGTTTTAAGGTTTCGATCATCGATAATTTT 325
Query 334 GATAACTCTGTCGTTGAAGCTGTTCATAGGGTTAGGGAACTTGTTGGTCCTGATCTCTCT 393
||||||||||| | ||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 326 GATAACTCTGTTATCGAAGCTGTTGATAGAGTTAGGGAGCTTGTTGGTCCTGATCTCTCC 385
Query 394 ACCAAGCTTGAATTCAATCTGGGTGATCTAAGAAACAAAGGAGATATTGAGAAACTCTTT 453
| ||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 386 AAGAAGCTCGACTTCAATCTGGGTGATCTAAGAAACAAAGGGGACATTGAGAAACTATTC 445
Query 454 TCTAATCAGAGATTTGATGCTGTGATTCACTTTGCTGGTCTTAAAGCTGTGGGAGAAAGT 513
|| || ||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 446 TCCAAGCAGAGATTTGATGCTGTGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAGT 505
Query 514 GTTGGAAACCCTCGTCGTTACTTTGATAATAACTTAGTTGGAACTATCAATCTATATGAA 573
|||| ||||||||| || |||||||| |||||||| |||||||| ||||||||||||||
Sbjct 506 GTTGAAAACCCTCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTATATGAG 565
Query 574 ACCATGGCAAAATACAACTGCAAAATGATGGTGTTTTCGTCGTCTGCAACGGTTTATGGC 633
||||||||||| |||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct 566 ACCATGGCAAAGTACAACTGCAAAATGATGGTGTTTTCATCTTCTGCCACTGTTTATGGA 625
Query 634 CAACCTGAAATAG-TCCCATGTGTGGAAGACTTTGAGTTACAGGCTATGAATCCTTATGG 692
|||||||||| || | ||||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 626 CAACCTGAAA-AGATTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTATGG 684
Query 693 TCGTACTAAGCTGTTTCTTGAAGAGATAGCTAGAGACATTCATGCTGCAGAACCAGAATG 752
|||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 685 TCGTACTAAGCTCTTTCTTGAAGAAATAGCTAGAGATATTCAAAAGGCAGAACCGGAATG 744
Query 753 GAAGA-TAATTCTTCTGAGGTACTTCAATCCGGTTGGAGCTCATGAGAGTGGAAGAATTG 811
|| || | ||||| ||||||||||||||||| || ||||| ||||||||||| || ||||
Sbjct 745 GA-GAATTATTCTGCTGAGGTACTTCAATCCTGTAGGAGCACATGAGAGTGGCAGTATTG 803
Query 812 GAGAAGATCCAAAGGGCATACCGAATAATCTCATGCCTTATATCCAACAAGTTGCGGTTG 871
| || |||||||| ||||| || ||||| ||||||||||| ||||||||||| || ||||
Sbjct 804 GTGAGGATCCAAAAGGCATCCCCAATAACCTCATGCCTTACATCCAACAAGTGGCCGTTG 863
Query 872 GACGATTACCTGAACTCAATGTATATGGACATGACTATCCTACT-ATGGATGGCAGCGCG 930
|||| ||||| ||||||||||| ||||||||||||||||| || | |||||| || |||
Sbjct 864 GACGTTTACCGGAACTCAATGTCTATGGACATGACTATCCCACCGA-GGATGGTAGTGCG 922
Query 931 GTCAGAGACTACATCCATGTAATGGATTTAGCAGATGGCCATGTGGCTGCATTAAACAAG 990
|| ||||||||||||||||| ||||||||||||||||||||| | ||||| | | |||
Sbjct 923 GTAAGAGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAG 982
Query 991 TTGTTTTCAGACTC-AAAGATTGGCTGTACTGCTTATAATCTTGGGACTGGTCAAGGAAC 1049
| ||| | || || ||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 983 CTATTTGCTGA-TCCAAAGATTGGTTGTACTGCTTACAATCTAGGGACTGGTCAAGGAAC 1041
Query 1050 TTCTGTCTTAGAAATGGTTTCTGCTTTTGAAAAAGCTTCTGGCAAGAAAATCCCTATCAA 1109
||||| |||||||||||| | ||||||||||||||||| |||||||||||||| || ||
Sbjct 1042 GTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAGAAAATCCCGATTAA 1101
Query 1110 GCTATGTCCAAGAAGAG-CTGGAGATGCAACAGCTGTTTATGCTTCAACTGAGAAAGCTG 1168
||| ||||| ||||| | | |||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1102 GCTCTGTCCGAGAAG-GTCAGGAGATGCAACAGCAGTTTATGCTTCAACAGAGAAGGCTG 1160
Query 1169 AGAAAGAACTCGGATGGAAGGCAAAGTATGGAGTTGATGAGATGTGCAGAGATCAATGGA 1228
|||||||||| || ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1161 AGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGA 1220
Query 1229 ACTGGGCAGATAAGAATCCATGGGGTTTCCAGAAAAAGCCTTGAAATGtttttttttttG 1288
| |||||| | || ||||||||||||| |||||| |||| ||||| | || || |||||
Sbjct 1221 AATGGGCAAACAATAATCCATGGGGTTACCAGAATAAGCTTTGAA-T-TTACTTCTTTTG 1278
Query 1289 TTT 1291
|||
Sbjct 1279 TTT 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5