BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475032
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63160.1 | Symbols: RFC2 | replication factor C 2 | chr1:234... 1868 0.0
> AT1G63160.1 | Symbols: RFC2 | replication factor C 2 | chr1:23421864-23423828
REVERSE LENGTH=1263
Length=1263
Score = 1868 bits (1011), Expect = 0.0
Identities = 1180/1258 (94%), Gaps = 26/1258 (2%)
Strand=Plus/Plus
Query 1 CCAAATCTCACCGGTCGGAGATTCCTTCTCTTCCGACTGATAATGGCGGCGTCTTCTTCT 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 16 CCAAATCTCACCGGTCGGAGATTCCTTCTCTTCCGACTGATAAT---GGCGTCTTCTTCA 72
Query 61 TCAACCTCTTCCGACGGCGGATACAAT-AACCCATGGGTGGAGAAATACAGGCCTAGCAA 119
||||||||| ||| | |||||||||| || ||||||||||||||||||||||| |||||
Sbjct 73 TCAACCTCTACCGGTGACGGATACAATGAA-CCATGGGTGGAGAAATACAGGCCGAGCAA 131
Query 120 AGTAGTTGATATCGTTGGAAACGAAGACGCCGTCTCCAGACTTCAAGTCATTGCTCGCGA 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AGTAGTCGATATCGTTGGAAACGAAGACGCCGTCTCCAGACTTCAAGTCATTGCTCGCGA 191
Query 180 CGGCAACATGCCTAATCTTATCCTTTCCGGTCCTCCTGGAACAGGTAAAACCACAAGCAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CGGCAACATGCCTAATCTTATCCTTTCCGGTCCTCCTGGAACAGGTAAAACCACAAGCAT 251
Query 240 TTTGGCTCTTGCTCACGAGCTTCTTGGCCCGAATTATAAGGAGGCTGTTCTTGAGTTGAA 299
||||||||||||||| ||||| |||||| ||||||| |||||||||||||| ||||||||
Sbjct 252 TTTGGCTCTTGCTCATGAGCTCCTTGGCACGAATTACAAGGAGGCTGTTCTGGAGTTGAA 311
Query 300 TGCATCTGATGATAGGGGTATTGATGTTGTAAGGAACAAAATTAAGATGTTTGCGCAGAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGCATCTGATGATAGGGGTATTGATGTTGTAAGGAACAAAATTAAGATGTTTGCGCAGAA 371
Query 360 GAAAGTAACACTTCCTCCAGGGCGTCATAAGGTTGTCATTCTGGATGAAGCTGACAGCAT 419
|||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct 372 GAAAGTAACACTTCCTCCAGGGCGTCATAAGGTTGTTATCCTAGATGAAGCTGACAGTAT 431
Query 420 GACATCTGGAGCACAACAAGCATTGAGGAGAACGATTGAAATCTATTCGAATTCAACACG 479
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 432 GACATCTGGAGCACAACAAGCATTGAGGAGAACGATTGAAATCTATTCGAACTCTACGCG 491
Query 480 GTTTGCACTTGCTTGCAATACGTCATCCAAGATTATTGAGCCCATTCAGAGTAGATGTGC 539
||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 492 GTTTGCACTTGCTTGTAATACATCAGCCAAGATTATTGAGCCCATTCAGAGTAGATGTGC 551
Query 540 CTTGGTTCGATTCTCTAGATTATCTGATCAGCAGATACTAGGCCGTCTTTTGGTGGTGGT 599
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 552 CTTAGTTCGATTCTCTAGATTATCTGATCAGCAGATACTAGGCCGTCTCTTGGTGGTGGT 611
Query 600 TGAAGCAGAGAATGTTCCGTATGTACCCGAAGGCCTTGAGGCGATAATCTTTACAGCTGA 659
|| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 612 TGCAGCAGAGAAAGTTCCGTATGTGCCTGAAGGCCTTGAGGCGATAATCTTTACAGCTGA 671
Query 660 TGGTGACATGAGGCAAGCTCTGAACAACTTGCAAGCCACATTCAGCGGGTTT-CGGTTTG 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 672 TGGTGACATGAGGCAAGCTCTGAACAACTTGCAAGCCACATTCAGCGGGTTTTCG-TTTG 730
Query 719 TCAACCAAGAAAACGTCTTCAAGGTCTGTGACCAGCCTCACCCGCTTCATGTCAAGAACA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TCAACCAAGAAAACGTCTTCAAGGTCTGTGACCAGCCTCACCCGCTTCATGTCAAGAACA 790
Query 779 TTGTTCGTAATGTGTTGGAAAGTAAGTTTGACGAT-GCTTGTCACGGTTTAAAGCAACTC 837
||||||| |||||||||||||||||||||||| || || ||| |||| |||||||| |||
Sbjct 791 TTGTTCGCAATGTGTTGGAAAGTAAGTTTGAC-ATCGCCTGTGACGGCTTAAAGCAGCTC 849
Query 838 TATGATCTGGGCTACTCTCCAACCGACATTATCACAACGCTTTTCCGTATAATAAAGAAT 897
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 TATGATTTGGGCTACTCTCCAACCGACATTATCACAACGCTTTTCCGTATAATAAAGAAT 909
Query 898 TACGATATGGCTGAGTATCTGAAACTCGAGTTCATGAAGGAAACTGGATTTGCGCATATG 957
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 910 TACGATATGGCTGAGTATCTGAAACTTGAGTTCATGAAGGAAACTGGATTTGCGCATATG 969
Query 958 AGAATCTGTGATGGAGTTGGATCTTATCTTCAGCTATGTGGTCTTCTGGCTAAGTTATCC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 AGAATCTGTGATGGAGTTGGATCTTATCTTCAGCTATGTGGTCTTCTGGCTAAGTTATCC 1029
Query 1018 ATTGCTCGTGAAACAGCGAAAGCACCTTAAGTTAGGTAACTTTCAGTCTTCCACTCATCT 1077
|||| ||||||||||||||||||||||||||||||||||||| || || | | || |||
Sbjct 1030 ATTGTTCGTGAAACAGCGAAAGCACCTTAAGTTAGGTAACTTCCA--CT-C-A-TC-TCT 1083
Query 1078 GTAGTGATGAACCGTTGACTGGTTTATGTTTAAACCGATTTGGTTAACGCTCGTTGTTTG 1137
|||||||||| | || | ||| |||||||||||| | |||||||| |||||||||||
Sbjct 1084 --AGTGATGAACTGGTGGCCGGTCTATGTTTAAACCAAGTTGGTTAAATCTCGTTGTTTG 1141
Query 1138 AGAATTCGGATAGATCTTGGAACTTCCTTGCTGCT-TTACTCTGTTTTCTAGATTTGAAT 1196
||||||||||||||| ||||||||||| ||||| | || |||||||||||||||||||||
Sbjct 1142 AGAATTCGGATAGATGTTGGAACTTCCATGCTG-TATTGCTCTGTTTTCTAGATTTGAAT 1200
Query 1197 GGCTTGTGAATGTTTATGAATATTATCTTTGAAGCTTAATCCTAACCAATTTGGTATA 1254
|||||||||||||| ||||||||| | ||||||||||||||| |||||||||
Sbjct 1201 TGCTTGTGAATGTTTCTGAATATTA------A-GCTTAATCCTAACCAGTTTGGTATA 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5