BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475037
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63110.1 | Symbols: | GPI transamidase subunit PIG-U | chr1... 2636 0.0
AT1G12730.1 | Symbols: | GPI transamidase subunit PIG-U | chr1... 1153 0.0
> AT1G63110.1 | Symbols: | GPI transamidase subunit PIG-U | chr1:23404822-23408052
FORWARD LENGTH=1753
Length=1753
Score = 2636 bits (1427), Expect = 0.0
Identities = 1642/1743 (94%), Gaps = 25/1743 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTTCACTCGCCGGAGAGAGAGAAGAACAAAAGACGACGGAGAAATGGCGGAGGAG 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTTCACTCGCCGGAGAGAGAGAAGAAGAAAAGACGACGGAGAAATGGCGGAGGAG 60
Query 61 CAG--AA-G-A--AGCTATGCCGTTTCTGGATTTGGGCTTTATCTTCCGTTGCTTTCCGA 114
||| || | | ||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 61 CAGAAAATGAAGCAGCTAAGCCGATTCTGGATTTGGGCTTTATCTTCCATTGCTTTCCGA 120
Query 115 TTGATCTTGATCTCCTTCCCGGGAAATCTCAATCTCTCTTCCCGTCCGGAGGTCTCTACC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGATCTTGATCTCCTTCCCGGGAAATCTCAATCTCTCTTCCCGTCCGGAGGTCTCTACC 180
Query 175 CCTCTCACCAGCATTCGCCGCCTTGCTGAAGGTTATTGGTTGAAGCAAGCATCAATGTCA 234
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 181 CCTCTCACCAGCATTCGCCGCCTTGCTGAAGGTTATTGGTTGAAGCAGGCATCGATGTCA 240
Query 235 CCATACGCAGGATCTATGTATCATGGCTCTCCATTGCTGCTCTCGATTCTTGGACCTCTC 294
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 241 CCATATGCAGGATCTATGTATCATGGCTCACCATTGCTGCTCTCGGTTCTTGGACCTCTC 300
Query 295 ACAGTTCAGAGGATTAAAGGGCAACCAAGTCACCTCTTGTGCAGCTTGGTTTTTGTTATT 354
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAGTTCAAAGGATTAAAGGGCAACCAAGTCACCTCTTGTGCAGCTTGGTTTTTGTTATT 360
Query 355 GCAGATATATTAAGTGCGATGCTTCTTCGAGGTATTGGTCAGAAACTCCAGATGGCTTAT 414
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 GCAGATATATTAAGTGCAATGCTTCTTCGAGCTATTGGTCAGAAACTCCAGATGGCTTAT 420
Query 415 GGACTGAATGCGAGGCTACTCGGCTTTCTTAAGTCATCAAGAGATAAAGTGATCCTACCT 474
|||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 421 GGACTGAATGCGAGACTACTTGGTTTTCTTAAGTCATCAAGGGATAAAGTGATCCTACCT 480
Query 475 TGTGGTGATATTGCTGCTCTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTGGTGATATTGCTGCTCTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTG 540
Query 535 GGCTTATCAACTTCTCCCATCGAAAATCTGGCTGTCATATTGGCGCTTTTTGGAGCAGTT 594
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GGCTTATCAACTTCTCCCATCGAAAACCTGGCTGTCATATTGGCGCTTTTTGGAGCAGTT 600
Query 595 ACCCGACGAGTTCCTCTGGCTGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTAT 654
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACACGACGAGTTCCTCTGGCAGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTAT 660
Query 655 CCTGCTACTCTGACAATTCCAATAATCTTTCTATTGGGATGTGGTTTGGATGCTCCTCCT 714
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 CCTGCTACTCTGACAATTCCAATAATCTTTCTATTGGGATATGGTTTGGATGCTCCTCCT 720
Query 715 ATTAAATTGTTCCTTCAGACCAGGAGTGTAGAAAAGGAGGAGACTTCTACATCTACTGTT 774
|| |||||||||||||||||||| ||||||||||| ||||||| ||| || |||||||||
Sbjct 721 ATAAAATTGTTCCTTCAGACCAGAAGTGTAGAAAATGAGGAGAGTTCAACCTCTACTGTT 780
Query 775 TCTAAACAAGCCAAGTTGAAACAGACAATGCGCATTCCTTTCTTATGGAAAACAGTCGCA 834
|||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||
Sbjct 781 TCTAAACAAGCCAAGTTGAAACAGACTACGCACCTTCCTTTCTTATGGAAAACAGTCGCA 840
Query 835 CA-TATCTTGTTCTGGGTACTTCTGTGGTCGCTCTATGTGTTGGTCTTAAGTGCTTTATC 893
|| | ||||||||||||||||||||||||| |||||||||||| | ||| |||| |||||
Sbjct 841 CACT-TCTTGTTCTGGGTACTTCTGTGGTCACTCTATGTGTTGATTTTATGTGCCTTATC 899
Query 894 ACTGAATAAACATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCATTCTCAG 953
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 ACTGAATAAATATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCATTCTTAG 959
Query 954 TATTGAAGATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGTCTTCGA 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 TATTGAAGATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGTATTCGA 1019
Query 1014 CTTCTTCAGAAACTTTTTCCTGATAGTTTTCCACGTAAATATTCTGTTTATGTTACTGCC 1073
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1020 CTTCTTCAGAAACTTTTTTCTGATAGTTTTACACGTAAATATTCTGTTCATGTTACTGCC 1079
Query 1074 CTTAGCCATACGGTTGAAACATCGGCCATGCTTCCTAGCTTTCATATACTTAGCGATCTC 1133
|||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1080 CTTAGCCATAAGGTTGAAACATCGGCCATGTTTCCTGGCTTTCATATACTTAGCGATCTC 1139
Query 1134 CTCGATTCTTAAATCTTATCCCTCAGTCGGAGATTCGGCATTATACTTGAGCTTATGGGC 1193
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 CTCGATTCTTAAATCTTATCCTTCAGTCGGAGATTCGGCGTTATACTTGAGCTTATGGGC 1199
Query 1194 ATTGTTTGTCAATGAATTAATAGATATGAAGTTCTCATTCTTCCTCTTCTGTGGATATCT 1253
||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 ATTGTTTGTCAATGAGTTATTAGATATGAAGTTCTCGTTCTTCCTCTTCTGTGGATATCT 1259
Query 1254 CGGGATTTCTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGGCGGGGAACCGGAAA 1313
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CGGGATCTCTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGGCGGGGAACCGGAAA 1319
Query 1314 CGCAAATTTCTACTTTGGAAACGCTATCGGCTACGCATGCTTTCAGATTGTTTTCGTGGT 1373
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1320 TGCAAATTTCTACTTTGGAAACGCTATCGGCTACGCGTGCTTTCAGATCGTTTTCGTGGT 1379
Query 1374 TGAGAGCGTAAGCGCAATGCTAAACCATGACAGGGCGCTGAAGAGATCTAACTCGAACCA 1433
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1380 TGAGAGCGTAAGCGCAATGCTAAACCATGACAGGGCGCTGAAGAGATCAAACTCAAACCA 1439
Query 1434 TCGAGAAGTTAAGAGCTAAGCCATTGAAGGTCATTACGCCACTTTTCTATTACACGCAAA 1493
||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1440 TCGAGAAGTCAAGAGCTAAGCCATTGAAGGTCATTGCGCCACTTTTCTGTTACACGTAAA 1499
Query 1494 GAAAAGAGTTCGGTCTTTAGCTTAA--T-G--ATC-TGT--TT-GAGTCA----CTTTTC 1540
|||||||||| |||||||||||||| | | | | ||| || | || | ||||||
Sbjct 1500 GAAAAGAGTTGGGTCTTTAGCTTAAAGTTGGCAACATGTGATTTGTGTGAGTAGCTTTTC 1559
Query 1541 TTTGTTTGAGAACATCAGATAAATGACAAATCTCCTGTGCCTTGCCATT-AGAGTAACAA 1599
||||||||||||||||| |||||| |||||||||||||||||| || || |||||||| |
Sbjct 1560 TTTGTTTGAGAACATCATATAAATAACAAATCTCCTGTGCCTTTCCGTTTAGAGTAACCA 1619
Query 1600 TTAATTTGTACTTTCTACCGAGAGGTTTTAAAGTTCTTGCTTTGATCAGCAAAGCACACA 1659
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1620 TTAATTTGTACTTTTTACCGAGAGGTTTTAAAGTTCTTGTTTTGATCCGCAAAGCACACA 1679
Query 1660 ATCAT---TATATTTTAAGTTAGATCGCATGTATATAAGGTATTGTTATTTGTGAATGGT 1716
||||| ||||||| |||||| |||||||||||| |||||||| | |||||||||||||
Sbjct 1680 ATCATCCCTATATTTGAAGTTACATCGCATGTATACAAGGTATTATCATTTGTGAATGGT 1739
Query 1717 GGA 1719
|||
Sbjct 1740 GGA 1742
> AT1G12730.1 | Symbols: | GPI transamidase subunit PIG-U | chr1:4334615-4337844
FORWARD LENGTH=1720
Length=1720
Score = 1153 bits (624), Expect = 0.0
Identities = 1171/1427 (82%), Gaps = 70/1427 (5%)
Strand=Plus/Plus
Query 24 GAGAAGAACAAAAGACGACGGAGAAATGGCGGAGGAGCAGAAGAAGCTATGCCGT-TTCT 82
||| |||| ||||||||||||| |||||| || | | ||||| || | | | ||||
Sbjct 67 GAGGAGAA-GAAAGACGACGGAGTAATGGCTGA-G-G-AGAAG--CCT-T-ACATGTTCT 118
Query 83 GGATTTGGGCTTTATCTTC--CGTTGCTTTCCGATTGA-TCTTGATCTCCTT-CCCGGGA 138
|||||||| |||| |||| || | ||||||||| | || |||||| || ||||| |
Sbjct 119 GGATTTGGACTTTGGCTTCTACGAT--TTTCCGATT-ATTCCTGATCT-TTTCCCCGGCA 174
Query 139 AATCTCAATCTCTCTTCCCGTCCGGAGGTCTCTACCCCTCTCACCAGCATTCGCCGCCTT 198
||| |||| || |||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 175 AATATCAACCTATCTTCCCGTCCGGAGGTCTCCACCCCTCACACCAGCCTTCGCCGCCTT 234
Query 199 GCTGAAGGTTATTGGTTGAAGCAAG-CATCAATGTCACCATACGCAGGATCTATGTATCA 257
||||||||||| |||||||||| || ||||| |||| |||||||||||||| ||||||||
Sbjct 235 GCTGAAGGTTACTGGTTGAAGC-AGTCATCACTGTCGCCATACGCAGGATCAATGTATCA 293
Query 258 TGGCTCTCCATTGCTGCTCTCGATTCTTGGACCTCTCACAGTTCAGAGGATTAAAGGGCA 317
||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 294 TGGCTCTCCATTGCTACTCTCCATTCTCGGTCCTCTCACAGTTCAGAGGATCGAAGGGCA 353
Query 318 ACCAAGTCA-CCTCTTGTGCAGCTTGGTTTTTGTTATTGCAGATATA-TTAAGTGCGA-T 374
| | ||||| | | |||||||| ||||||||||||||||||||| || || ||||| | |
Sbjct 354 ATCGAGTCATCAT-TTGTGCAGTTTGGTTTTTGTTATTGCAGATTTACTT-AGTGC-ACT 410
Query 375 GCTTCTTCGAGGTATTGGTCAGAAACTCCAGATGGCTTATGGACTGAATGCGAGGCTACT 434
||||||||||| |||||||||||| ||||||| | ||||| || ||||| ||||| |||
Sbjct 411 GCTTCTTCGAGCTATTGGTCAGAAGCTCCAGAAGTCTTATAGAATGAATTTGAGGCCACT 470
Query 435 CGGCT-TTCTTAAGTCATC-AAGAGATAAAGTGATCCTACCTTGTGGTGATATTGCTGCT 492
|| | |||||| |||||| || |||| || |||||| |||||||| ||||||||||||
Sbjct 471 TGG-TGTTCTTAGGTCATCGCAG-GATAGAGGGATCCTTCCTTGTGGAGATATTGCTGCT 528
Query 493 CTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTGGGCTTATCAACTTCTCCC 552
||||||||| |||||||||||||||| ||| |||||||||| |||||||| ||||||||
Sbjct 529 CTTGTGTATCTGTGGAATCCTTTCACAATACTTTCTTGTGTTGGCTTATCTACTTCTCCA 588
Query 553 ATCGAAAATCTGGCTGTCATAT-TGGCGCTTTTTGGAGCAGTTACCCGACGAGTTCCTCT 611
|| |||||| |||||||||| | || | |||| |||||||||||| ||||||||||||||
Sbjct 589 ATAGAAAATTTGGCTGTCAT-TGTGTCTCTTTATGGAGCAGTTACTCGACGAGTTCCTCT 647
Query 612 GGCTGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTATCCTGCTA-CTCTGA-CA 669
|||||||||||| ||| |||| ||||||||||| ||||||||| | || | || | |
Sbjct 648 GGCTGCATTTGGGTTAATCATGGCCACACATTTGTCTCTTTATTCAGC-ACCT-TTAGTG 705
Query 670 ATTCCAATAATCTTTCTATTGGGATGTGGTTTGGATGCTCCTCCTATTAAATTGTTCCTT 729
||||| | |||||||| ||||||| |||||| ||||| |||||||| ||| |||||||
Sbjct 706 TTTCCATTGATCTTTCTGTTGGGATATGGTTTAGATGCCCCTCCTATAAAAAAGTTCCTT 765
Query 730 CAGACCAGGAGTGTAGAAAAGGAGGAGACT---TCTACATCT-ACTGTTTCTAAACAAGC 785
|||| || || | | | || |||||| || || ||| | ||||||||||||||
Sbjct 766 CAGA-CAAGA-CAT-GGAGGGGTTGAGACTGGATCAACCTCTGA-TGTTTCTAAACAAGA 821
Query 786 CAAGTTGAAACAGACAATGCGC-A-TTCCTTTCTTATGGAAAACAGTCGCACATATCTTG 843
||||||| | ||| | | | | ||||||||| ||||| ||||||| ||| || |
Sbjct 822 AAAGTTGACTCCGAC--TACACAACTTCCTTTCTCATGGAGAACAGTCTTGCATTTCGTA 879
Query 844 TTCTGGGTACTT-CTGTGGTCGCTCTATGTGTTGGTCTTAAG-TGCTTTATCACTGAATA 901
|| |||||| || | |||||| |||||||||||| ||| | || |||||| |||| |
Sbjct 880 TTTTGGGTA-TTGGTTTGGTCGAGCTATGTGTTGGTTTTATGCAGC-TTATCATTGAA-A 936
Query 902 -AACATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCATTCTCAGTATTGAA 960
|| ||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 937 CAATATGGTGGGCTTGAGGAGATGTTCAAAAGGACTTATGGTTTCATTCTCAGAATCGAA 996
Query 961 GATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGTCTTCGACTTCTT- 1019
||||| |||||||||||||| ||||||||||||||||| ||||||| |||||| || ||
Sbjct 997 GATCTGTCACCAAACATTGGTGTCTTTTGGTACTTCTTCGCAGAAGCCTTCGAGTT-TTC 1055
Query 1020 CAGAAACTT-TTTCCTGATAGTTTTCCACGTAAATATTCTGTTTA--T-GTTACTGCCCT 1075
|||||| || | |||||||| ||||| || || ||||||| ||| | | ||| | |
Sbjct 1056 CAGAAA-TTATCTCCTGATAATTTTCAACTTATATATTCTCCTTACTTCGATACCATCTT 1114
Query 1076 TAGCCATACGGTTGAAACATCGGCCATGCTTCCTAGCTTTC-ATATACTTAGCGATCTCC 1134
|| | ||||| |||||||| || |||||||| |||||| | || ||||| || |
Sbjct 1115 TAATGTTCCGGTTAAAACATCGACCCTGCTTCCTTGCTTTCGCT-TATTTAGCCTTCACT 1173
Query 1135 TCGATTCTTAAATCTTATCCCTCAGTCGGAGATTCGGCATTATACTTGAGCTTATGGGCA 1194
|||||||||||||||||||| ||||| |||||| | || ||||||||||| |||||||||
Sbjct 1174 TCGATTCTTAAATCTTATCCTTCAGTTGGAGATGCAGCTTTATACTTGAGTTTATGGGCA 1233
Query 1195 TTGTTTGTCAATGAATTAATAGATATGAAGTTCTCATTCTTCCTCTTCTGTGGATATCTC 1254
||||||||||||||||||| ||| ||| ||| ||| ||||| |||||||||||||| ||
Sbjct 1234 TTGTTTGTCAATGAATTAACAGACATGGAGTACTCGTTCTTTATCTTCTGTGGATATATC 1293
Query 1255 GGGATTT-CTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGGCGGGGAACCGGAAA 1313
|| |||| | || ||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 1294 GG-ATTTTCGCTTCTCAGCCCTGTGATGCACAATTTCTGGATATGGAGGGGAACTGGAAA 1352
Query 1314 CGCAAATTTCTACTTTGGAAACGCTATCGGCTACGCATGCTTTCAGATTGT-TTTCGTGG 1372
||||| |||||||| ||||| ||||| ||||| || ||||||||| || | ||| ||||
Sbjct 1353 TGCAAACTTCTACTTCGGAAATGCTATGGGCTATGCGTGCTTTCAGTTTATGTTT-GTGG 1411
Query 1373 TTGA-GAGCGTAAGCGCAATGCTAAACCATGAC-AGGGCGCTGAAGA 1417
|| ||| |||| ||||||||| ||||| ||| ||| |||||||||
Sbjct 1412 A-GAAGAGTGTAAACGCAATGCTCAACCACGACCAGG-CGCTGAAGA 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84989522685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5