BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475042 Length=568 Score E Sequences producing significant alignments: (Bits) Value AT1G63320.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 806 0.0 AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 492 2e-138 AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 486 8e-137 AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 483 1e-135 AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 475 2e-133 AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 453 8e-127 AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:23... 448 4e-125 AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 427 5e-119 AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 422 2e-117 AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 342 2e-93 AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 250 1e-65 AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 86.1 3e-16 > AT1G63320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23488884-23489530 REVERSE LENGTH=570 Length=570 Score = 806 bits (436), Expect = 0.0 Identities = 528/572 (92%), Gaps = 8/572 (1%) Strand=Plus/Plus Query 1 ATGGAACTCTTTCG-GAACATGTCTCAAAGAGGATTGGTTGGAAACACAGTCACTTACAA 59 ||||||||||| || | | ||||||||||||||||||||||| |||||||||||||||| Sbjct 1 ATGGAACTCTTCCGCG-AGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACAC 59 Query 60 CACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAA 119 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 60 CACTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAAATATTCAA 119 Query 120 AGTGATGGTTTCTGATGGTTTGCCTCCAGATATTATGACATACAACTTTCTGTTAGATGG 179 || |||||| |||||||| ||||||| ||||| |||||||||||| ||||||||||||| Sbjct 120 AGAGATGGTATCTGATGGCGTGCCTCCCGATATCATGACATACAACATTCTGTTAGATGG 179 Query 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGGCAAGGAAGGTGGAAGATGGGTG 239 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGGCAGGGAAGGTGGAAGATGGGTG 239 Query 240 GAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTGATGTTATAACCTACA-ATA 298 | || ||||||||||||||||||||||||||||||||||| ||||| ||||||||| | | Sbjct 240 GGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTAATGTTGTAACCTACACA-A 298 Query 299 CAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGAGGAAGCAGATACCTTGTTCaaaa 358 |||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||| || Sbjct 299 CAATGATCTCAGGATTCTGTAAGAAAGGTTTTAAGGAGGAAGCATATACCTTATTCAGAA 358 Query 359 aaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AAATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418 Query 419 ATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCAAAGAGATGAGGAGTTGCG 478 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 419 ATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCAAAGAAATGAGGAGTTGCA 478 Query 479 GGTTTGCTGGAGATGCTTCAACC-ATTGGCTTGGTGACTA-ATATGCTGCATGATGGGAG 536 | |||||||||||||||||||| || |||||||| || | ||||| ||||||||||||| Sbjct 479 GATTTGCTGGAGATGCTTCAACTTAT-GGCTTGGTCAC-AGATATGTTGCATGATGGGAG 536 Query 537 ATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568 |||||||||| | ||| |||| ||||| |||| Sbjct 537 ATTGGACAAAGGATTTTTGGAAATGCTATCTT 568 > AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23412730-23415149 FORWARD LENGTH=2420 Length=2420 Score = 492 bits (266), Expect = 2e-138 Identities = 325/354 (92%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1663 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1722 Query 276 GCCTGATGTTATAACCTACA-ATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGG 334 |||| ||||| ||||||||| | |||||||| |||||||| ||| ||||||||||||||| Sbjct 1723 GCCTAATGTTGTAACCTACACA-ACAATGATGTCAGGATTTTGTAGGAAAGGTTTAAAGG 1781 Query 335 AGGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTA 394 | ||||||||| ||||||| | | ||||||||||||| |||||||||||||||||||||| Sbjct 1782 AAGAAGCAGATGCCTTGTTTAGAGAAATGAAAGAAGAAGGGCCTCTTCCAGATAGTGGTA 1841 Query 395 CTTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAAC 454 | |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1842 CATATAATACGCTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAAC 1901 Query 455 TCATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTGA 514 |||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||| | Sbjct 1902 TCATCAGAGAAATGAGGAGTTGCAGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCA 1961 Query 515 CTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568 |||||||| ||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1962 CTAATATGTTGCATGATGGGAGATTGGACAAAAGCTTTCTCAAGATGCTTTCTT 2015 > AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23387631-23390816 REVERSE LENGTH=3186 Length=3186 Score = 486 bits (263), Expect = 8e-137 Identities = 326/356 (92%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1579 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1638 Query 276 GCCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGA 335 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1639 ACCTGATGTTATAGCCTACAATACAATGATCTCAGGATTCTGTAAGAAAGGTTTAAAGGA 1698 Query 336 GGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTAC 395 ||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| Sbjct 1699 GGAAGCATATACCTTGTTCATAAAGATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTAC 1758 Query 396 TTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACT 455 |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1759 ATATAATACGCTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACT 1818 Query 456 CATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACC-ATTGGCTTGGTGA 514 ||||||||| |||||||||||| |||||||||| ||||||||||| || |||||||| | Sbjct 1819 CATCAAAGAAATGAGGAGTTGCAGGTTTGCTGGCGATGCTTCAACTTAT-GGCTTGGTCA 1877 Query 515 CTA-ATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACA-TGCTTTCTT 568 | | ||||| ||||||||||||||||||||||| | ||| |||| | ||||||||| Sbjct 1878 C-AGATATGTTGCATGATGGGAGATTGGACAAAGGATTTTTGGA-AGTGCTTTCTT 1931 > AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23385324-23387167 REVERSE LENGTH=1773 Length=1773 Score = 483 bits (261), Expect = 1e-135 Identities = 322/352 (91%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1419 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1478 Query 276 GCCTGATGTTATAACCTACA-ATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGG 334 |||| ||||| ||||||||| | |||||||| |||||||| ||| ||||||||||||||| Sbjct 1479 GCCTAATGTTGTAACCTACACA-ACAATGATGTCAGGATTTTGTAGGAAAGGTTTAAAGG 1537 Query 335 AGGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTA 394 | ||||||||| ||||||| | |||||||||||||||||||||||||| |||| |||| Sbjct 1538 AAGAAGCAGATGCCTTGTTTGTAGAAATGAAAGAAGATGGGCCTCTTCCAAATAGCGGTA 1597 Query 395 CTTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAAC 454 | ||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||| Sbjct 1598 CCTATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACGAAGCAGCATCAGCTGAAC 1657 Query 455 TCATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTGA 514 |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| | Sbjct 1658 TCATCAAAGAAATGAGGAGTTGCGGATTTGCTGGAGATGCTTCAACCTTTGGCTTGGTCA 1717 Query 515 CTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTC 566 |||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1718 CTAATATGTTGCATGATGGGAGATTGGATAAAAGCTTTCTGGACATGCTTTC 1769 > AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23299057-23300958 FORWARD LENGTH=1902 Length=1902 Score = 475 bits (257), Expect = 2e-133 Identities = 323/355 (91%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 216 GGCAAGGAAGGTGGAAGATGGGT-GGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGA 274 |||| |||||||||||||||||| |||| || ||||||| |||||||||||||||||| Sbjct 1548 GGCAGGGAAGGTGGAAGATGGGTGGGAA-TTGTTTTGTAATCTCAGCCTTAAAGGAGTG- 1605 Query 275 AG-CCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAG 333 || ||| |||||||| |||||||||||||||| |||||||| ||| ||||||||| |||| Sbjct 1606 AGCCCTAATGTTATAGCCTACAATACAATGATATCAGGATTTTGTAGGAAAGGTTCAAAG 1665 Query 334 GAGGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGT 393 |||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||| Sbjct 1666 GAGGAAGCAGATTCCCTGTTAAAAAAAATGAAAGAAGATGGGCCTCTTCCAAATAGTGGT 1725 Query 394 ACTTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAA 453 || ||||||||||| |||||||| | |||||||||||||||| || ||||||||||||| Sbjct 1726 ACCTATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAGAGAAGCATCAGCTGAA 1785 Query 454 CTCATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTG 513 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1786 CTCATCAAAGAAATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTC 1845 Query 514 ACTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568 ||||||||| | |||||||||||||||||||||||||| || || |||||||||| Sbjct 1846 ACTAATATGTTACATGATGGGAGATTGGACAAAAGCTTCCTCGATATGCTTTCTT 1900 > AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308683 FORWARD LENGTH=2150 Length=2150 Score = 453 bits (245), Expect = 8e-127 Identities = 318/354 (90%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1536 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1595 Query 276 GCCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGA 335 |||| |||| |||| |||| ||||||||| |||||||| ||| |||||||||||||||| Sbjct 1596 GCCTAATGTAATAATTTACACTACAATGATATCAGGATTTTGTAGGAAAGGTTTAAAGGA 1655 Query 336 GGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTAC 395 ||||||||| ||||||| | | ||||||||||||||||| |||||||| |||||||||| Sbjct 1656 AGAAGCAGATGCCTTGTTTAGAGAAATGAAAGAAGATGGGACTCTTCCAAATAGTGGTAC 1715 Query 396 TTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACT 455 ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1716 CTATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACT 1775 Query 456 CATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCT-TGGTGA 514 ||||||||| ||||||||||||||||||| ||||||||||||||| || | | |||||| Sbjct 1776 CATCAAAGAAATGAGGAGTTGCGGGTTTGTTGGAGATGCTTCAACAATAAG-TATGGTGA 1834 Query 515 CTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568 ||||||| ||||||||||||||||||| ||||||| |||||| ||||| |||| Sbjct 1835 TTAATATGTTGCATGATGGGAGATTGGAAAAAAGCTATCTGGAAATGCTGTCTT 1888 Score = 291 bits (157), Expect = 7e-78 Identities = 198/218 (91%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1 ATGGAACTCTTTCG-GAACATGTCTCAAAGAGGATTGGTTGGAAACACAGTCACTTACAA 59 ||||||||||| || | | ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1243 ATGGAACTCTTCCGCG-AGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACAA 1301 Query 60 CACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAA 119 |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1302 CACTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAAAAATATTCAA 1361 Query 120 AGTGATGGTTTCTGATGGTTTGCCTCCAGATATTATGACATACAACTTTCTGTTAGATGG 179 | |||||| |||||||| ||||||| ||||| || ||||||| | ||||||||||||| Sbjct 1362 AAAGATGGTATCTGATGGCGTGCCTCCCGATATCATAACATACAGCATTCTGTTAGATGG 1421 Query 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGG 217 |||||||||| |||||||||| |||||||||||||||| Sbjct 1422 ACTCTGTAAATATGGGAAGCTGGAGAAAGCATTGGTGG 1459 > AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=1893 Length=1893 Score = 448 bits (242), Expect = 4e-125 Identities = 317/354 (90%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275 |||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||| Sbjct 1539 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAATCTCAGCCTTAAAGGAGTGAA 1598 Query 276 GCCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGA 335 ||| |||||| || | |||||||||||||| |||||||| ||| ||||||||| |||||| Sbjct 1599 GCCGGATGTTGTAGCGTACAATACAATGATATCAGGATTTTGTAGGAAAGGTTCAAAGGA 1658 Query 336 GGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGG-TA 394 |||||||||| |||| || ||| ||||||||||||||||| |||||||| | || || | Sbjct 1659 GGAAGCAGATGCCTTATTTAAAGAAATGAAAGAAGATGGGACTCTTCCAAACAGCGGTTG 1718 Query 395 CTTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAAC 454 | ||||||||||| |||||||| | |||||||||||||||| || |||||||||||||| Sbjct 1719 C-TATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAGAGAAGCATCAGCTGAAC 1777 Query 455 TCATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTGA 514 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1778 TCATCAAAGAAATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTCA 1837 Query 515 CTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568 |||||||| | |||||||||||||||||||||||||| || || |||||||||| Sbjct 1838 CTAATATGTTACATGATGGGAGATTGGACAAAAGCTTCCTCGATATGCTTTCTT 1891 Score = 281 bits (152), Expect = 4e-75 Identities = 197/218 (90%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 1 ATGGAACTCTTTCG-GAACATGTCTCAAAGAGGATTGGTTGGAAACACAGTCACTTACAA 59 |||||| |||| || | | ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1246 ATGGAAGTCTTCCGTG-AGATGTCTCAAAGAGGATTGGTTGGCAACACTGTCACTTACAA 1304 Query 60 CACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAA 119 || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1305 CATTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAAATATTCAA 1364 Query 120 AGTGATGGTTTCTGATGGTTTGCCTCC-AGATATTATGACATACAACT-TTCTGTTAGAT 177 || |||||| |||||||| ||||||| | ||||||||||||||||| || |||||||| Sbjct 1365 AGAGATGGTATCTGATGGCGTGCCTCCCA-ATATTATGACATACAACACTT-TGTTAGAT 1422 Query 178 GGACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGT 215 ||||| ||||||||||||||||||||||||||| |||| Sbjct 1423 GGACTTTGTAAAAATGGGAAGCTAGAGAAAGCAATGGT 1460 > AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23489840-23491519 FORWARD LENGTH=1680 Length=1680 Score = 427 bits (231), Expect = 5e-119 Identities = 311/350 (89%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 221 GGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTG 280 |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1331 GGAAGGTGGATGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTA 1390 Query 281 ATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTA-AAGGAGGAA 339 ||||| ||||||||||||| ||||||||||| || ||| | ||| | || | ||||| Sbjct 1391 ATGTTGTAACCTACAATACCATGATCTCAGGCTTGTGTAGTAAACGCCTATTA-CAGGAA 1449 Query 340 GCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTAT 399 || || ||||| | ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1450 GCTTATGCCTTGCTAAAAAAAATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACATAT 1509 Query 400 AATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 459 ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1510 AATACACTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 1569 Query 460 AAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGT-GACTAA 518 | ||| |||||||||||| |||||| ||||||||||||||||||||||||||| | |||| Sbjct 1570 AGAGAAATGAGGAGTTGCAGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCG-CTAA 1628 Query 519 TATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568 |||| |||||||||||||||| ||||||||||| || || |||||||||| Sbjct 1629 TATGTTGCATGATGGGAGATTAGACAAAAGCTTCCTCGATATGCTTTCTT 1678 > AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23176930-23179248 REVERSE LENGTH=2212 Length=2212 Score = 422 bits (228), Expect = 2e-117 Identities = 310/350 (89%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 221 GGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTG 280 |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1606 GGAAGGTGGATGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTA 1665 Query 281 ATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTA-AAGGAGGAA 339 ||||| ||||||||||||| ||||||||||| || ||| | ||| | || | ||||| Sbjct 1666 ATGTTGTAACCTACAATACCATGATCTCAGGCTTGTGTAGTAAACGCCTATTA-CAGGAA 1724 Query 340 GCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTAT 399 || || ||||| | ||||||||||||||||| |||||||||||| |||||||||| ||| Sbjct 1725 GCTTATGCCTTGCTAAAAAAAATGAAAGAAGACGGGCCTCTTCCAAATAGTGGTACATAT 1784 Query 400 AATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 459 ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1785 AATACACTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 1844 Query 460 AAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGT-GACTAA 518 | ||| |||||||||||| |||||| ||||||||||||||||||||||||||| | |||| Sbjct 1845 AGAGAAATGAGGAGTTGCAGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCG-CTAA 1903 Query 519 TATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568 |||| |||||||||||||||| ||||||||||| || || |||||||||| Sbjct 1904 TATGTTGCATGATGGGAGATTAGACAAAAGCTTCCTCGATATGCTTTCTT 1953 > AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23419396-23421579 FORWARD LENGTH=2049 Length=2049 Score = 342 bits (185), Expect = 2e-93 Identities = 297/349 (85%), Gaps = 15/349 (4%) Strand=Plus/Plus Query 223 AAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTGAT 282 ||||||| ||| | |||| ||||||||||||||||||| | | | ||||||||| Sbjct 1555 AAGGTGGGAGAAGCGTGGGATTTATTTTGTAGCCTCAG-C-------A-TTAAGCCTGAT 1605 Query 283 GTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTA-AAGGAGGAAGC 341 ||| |||| ||||||||||||||||||||||| ||| | ||| | || | ||||||| Sbjct 1606 GTTGTAACATACAATACAATGATCTCAGGATTGTGTAGTAAACGCCTACTA-CAGGAAGC 1664 Query 342 AGAT-ACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTATA 400 |||| ||| |||||| |||||||||||||||||| |||||||| |||||||||| |||| Sbjct 1665 AGATGACC-TGTTCAGAAAAATGAAAGAAGATGGTACTCTTCCAAATAGTGGTACATATA 1723 Query 401 ATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCA 460 |||||||||| || || | ||||||||| |||||| ||| |||||||| |||||||||| Sbjct 1724 ATACGCTTATCAGAGCAAACCTTAGAGATTGTGACAGAGCCGCATCAGCAGAACTCATCA 1783 Query 461 AAGAGATGAGGAGTTGC-GGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTGACTAAT 519 |||| |||||||||| | ||||||| ||||||||||||||||||| |||||||||| ||| Sbjct 1784 AAGAAATGAGGAGTT-CTGGGTTTGTTGGAGATGCTTCAACCATTAGCTTGGTGACAAAT 1842 Query 520 ATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568 ||| ||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1843 ATGTTGCATGATGGGAGATTGGACAAAAGCTTTCTCAATATGCTTTCTT 1891 > AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23507320-23509053 FORWARD LENGTH=1734 Length=1734 Score = 250 bits (135), Expect = 1e-65 Identities = 165/180 (92%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1551 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1610 Query 276 GCCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGA 335 |||||||| |||| |||||||| |||||||||||||| ||| |||||||||||||||| Sbjct 1611 ACCTGATGTAATAATTTACAATACTATGATCTCAGGATTTTGTAGGAAAGGTTTAAAGGA 1670 Query 336 GGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTAC 395 ||||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||||| Sbjct 1671 AGAAGCAGATGCCTTGTTCAGAAAAATGAGAGAAGATGGGCCTCTTCCAGATAGCGGTAC 1730 > AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23301576-23303162 FORWARD LENGTH=1587 Length=1587 Score = 86.1 bits (46), Expect = 3e-16 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGA 274 |||| |||| ||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1530 GGCAGGGAA-GTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGA 1587 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27277141821 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5