BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475042
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63320.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 806 0.0
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 492 2e-138
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 486 8e-137
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 483 1e-135
AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 475 2e-133
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 453 8e-127
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:23... 448 4e-125
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 427 5e-119
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 422 2e-117
AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 342 2e-93
AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 250 1e-65
AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 86.1 3e-16
> AT1G63320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23488884-23489530 REVERSE LENGTH=570
Length=570
Score = 806 bits (436), Expect = 0.0
Identities = 528/572 (92%), Gaps = 8/572 (1%)
Strand=Plus/Plus
Query 1 ATGGAACTCTTTCG-GAACATGTCTCAAAGAGGATTGGTTGGAAACACAGTCACTTACAA 59
||||||||||| || | | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGAACTCTTCCGCG-AGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACAC 59
Query 60 CACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAA 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 CACTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAAATATTCAA 119
Query 120 AGTGATGGTTTCTGATGGTTTGCCTCCAGATATTATGACATACAACTTTCTGTTAGATGG 179
|| |||||| |||||||| ||||||| ||||| |||||||||||| |||||||||||||
Sbjct 120 AGAGATGGTATCTGATGGCGTGCCTCCCGATATCATGACATACAACATTCTGTTAGATGG 179
Query 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGGCAAGGAAGGTGGAAGATGGGTG 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGGCAGGGAAGGTGGAAGATGGGTG 239
Query 240 GAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTGATGTTATAACCTACA-ATA 298
| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct 240 GGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTAATGTTGTAACCTACACA-A 298
Query 299 CAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGAGGAAGCAGATACCTTGTTCaaaa 358
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||| ||
Sbjct 299 CAATGATCTCAGGATTCTGTAAGAAAGGTTTTAAGGAGGAAGCATATACCTTATTCAGAA 358
Query 359 aaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418
Query 419 ATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCAAAGAGATGAGGAGTTGCG 478
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 ATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCAAAGAAATGAGGAGTTGCA 478
Query 479 GGTTTGCTGGAGATGCTTCAACC-ATTGGCTTGGTGACTA-ATATGCTGCATGATGGGAG 536
| |||||||||||||||||||| || |||||||| || | ||||| |||||||||||||
Sbjct 479 GATTTGCTGGAGATGCTTCAACTTAT-GGCTTGGTCAC-AGATATGTTGCATGATGGGAG 536
Query 537 ATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
|||||||||| | ||| |||| ||||| ||||
Sbjct 537 ATTGGACAAAGGATTTTTGGAAATGCTATCTT 568
> AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412730-23415149 FORWARD LENGTH=2420
Length=2420
Score = 492 bits (266), Expect = 2e-138
Identities = 325/354 (92%), Gaps = 2/354 (1%)
Strand=Plus/Plus
Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1663 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1722
Query 276 GCCTGATGTTATAACCTACA-ATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGG 334
|||| ||||| ||||||||| | |||||||| |||||||| ||| |||||||||||||||
Sbjct 1723 GCCTAATGTTGTAACCTACACA-ACAATGATGTCAGGATTTTGTAGGAAAGGTTTAAAGG 1781
Query 335 AGGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTA 394
| ||||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||
Sbjct 1782 AAGAAGCAGATGCCTTGTTTAGAGAAATGAAAGAAGAAGGGCCTCTTCCAGATAGTGGTA 1841
Query 395 CTTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAAC 454
| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1842 CATATAATACGCTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAAC 1901
Query 455 TCATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTGA 514
|||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 1902 TCATCAGAGAAATGAGGAGTTGCAGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCA 1961
Query 515 CTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1962 CTAATATGTTGCATGATGGGAGATTGGACAAAAGCTTTCTCAAGATGCTTTCTT 2015
> AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23387631-23390816 REVERSE LENGTH=3186
Length=3186
Score = 486 bits (263), Expect = 8e-137
Identities = 326/356 (92%), Gaps = 6/356 (2%)
Strand=Plus/Plus
Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1579 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1638
Query 276 GCCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGA 335
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1639 ACCTGATGTTATAGCCTACAATACAATGATCTCAGGATTCTGTAAGAAAGGTTTAAAGGA 1698
Query 336 GGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTAC 395
||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 1699 GGAAGCATATACCTTGTTCATAAAGATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTAC 1758
Query 396 TTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACT 455
|||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1759 ATATAATACGCTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACT 1818
Query 456 CATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACC-ATTGGCTTGGTGA 514
||||||||| |||||||||||| |||||||||| ||||||||||| || |||||||| |
Sbjct 1819 CATCAAAGAAATGAGGAGTTGCAGGTTTGCTGGCGATGCTTCAACTTAT-GGCTTGGTCA 1877
Query 515 CTA-ATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACA-TGCTTTCTT 568
| | ||||| ||||||||||||||||||||||| | ||| |||| | |||||||||
Sbjct 1878 C-AGATATGTTGCATGATGGGAGATTGGACAAAGGATTTTTGGA-AGTGCTTTCTT 1931
> AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=1773
Length=1773
Score = 483 bits (261), Expect = 1e-135
Identities = 322/352 (91%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1419 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1478
Query 276 GCCTGATGTTATAACCTACA-ATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGG 334
|||| ||||| ||||||||| | |||||||| |||||||| ||| |||||||||||||||
Sbjct 1479 GCCTAATGTTGTAACCTACACA-ACAATGATGTCAGGATTTTGTAGGAAAGGTTTAAAGG 1537
Query 335 AGGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTA 394
| ||||||||| ||||||| | |||||||||||||||||||||||||| |||| ||||
Sbjct 1538 AAGAAGCAGATGCCTTGTTTGTAGAAATGAAAGAAGATGGGCCTCTTCCAAATAGCGGTA 1597
Query 395 CTTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAAC 454
| ||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 1598 CCTATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACGAAGCAGCATCAGCTGAAC 1657
Query 455 TCATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTGA 514
|||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 1658 TCATCAAAGAAATGAGGAGTTGCGGATTTGCTGGAGATGCTTCAACCTTTGGCTTGGTCA 1717
Query 515 CTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTC 566
|||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1718 CTAATATGTTGCATGATGGGAGATTGGATAAAAGCTTTCTGGACATGCTTTC 1769
> AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23299057-23300958 FORWARD LENGTH=1902
Length=1902
Score = 475 bits (257), Expect = 2e-133
Identities = 323/355 (91%), Gaps = 4/355 (1%)
Strand=Plus/Plus
Query 216 GGCAAGGAAGGTGGAAGATGGGT-GGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGA 274
|||| |||||||||||||||||| |||| || ||||||| ||||||||||||||||||
Sbjct 1548 GGCAGGGAAGGTGGAAGATGGGTGGGAA-TTGTTTTGTAATCTCAGCCTTAAAGGAGTG- 1605
Query 275 AG-CCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAG 333
|| ||| |||||||| |||||||||||||||| |||||||| ||| ||||||||| ||||
Sbjct 1606 AGCCCTAATGTTATAGCCTACAATACAATGATATCAGGATTTTGTAGGAAAGGTTCAAAG 1665
Query 334 GAGGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGT 393
|||||||||||| || |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1666 GAGGAAGCAGATTCCCTGTTAAAAAAAATGAAAGAAGATGGGCCTCTTCCAAATAGTGGT 1725
Query 394 ACTTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAA 453
|| ||||||||||| |||||||| | |||||||||||||||| || |||||||||||||
Sbjct 1726 ACCTATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAGAGAAGCATCAGCTGAA 1785
Query 454 CTCATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTG 513
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 CTCATCAAAGAAATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTC 1845
Query 514 ACTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
||||||||| | |||||||||||||||||||||||||| || || ||||||||||
Sbjct 1846 ACTAATATGTTACATGATGGGAGATTGGACAAAAGCTTCCTCGATATGCTTTCTT 1900
> AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308683 FORWARD LENGTH=2150
Length=2150
Score = 453 bits (245), Expect = 8e-127
Identities = 318/354 (90%), Gaps = 2/354 (1%)
Strand=Plus/Plus
Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1536 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1595
Query 276 GCCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGA 335
|||| |||| |||| |||| ||||||||| |||||||| ||| ||||||||||||||||
Sbjct 1596 GCCTAATGTAATAATTTACACTACAATGATATCAGGATTTTGTAGGAAAGGTTTAAAGGA 1655
Query 336 GGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTAC 395
||||||||| ||||||| | | ||||||||||||||||| |||||||| ||||||||||
Sbjct 1656 AGAAGCAGATGCCTTGTTTAGAGAAATGAAAGAAGATGGGACTCTTCCAAATAGTGGTAC 1715
Query 396 TTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACT 455
||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1716 CTATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACT 1775
Query 456 CATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCT-TGGTGA 514
||||||||| ||||||||||||||||||| ||||||||||||||| || | | ||||||
Sbjct 1776 CATCAAAGAAATGAGGAGTTGCGGGTTTGTTGGAGATGCTTCAACAATAAG-TATGGTGA 1834
Query 515 CTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
||||||| ||||||||||||||||||| ||||||| |||||| ||||| ||||
Sbjct 1835 TTAATATGTTGCATGATGGGAGATTGGAAAAAAGCTATCTGGAAATGCTGTCTT 1888
Score = 291 bits (157), Expect = 7e-78
Identities = 198/218 (91%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 1 ATGGAACTCTTTCG-GAACATGTCTCAAAGAGGATTGGTTGGAAACACAGTCACTTACAA 59
||||||||||| || | | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1243 ATGGAACTCTTCCGCG-AGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACAA 1301
Query 60 CACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAA 119
|||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1302 CACTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAAAAATATTCAA 1361
Query 120 AGTGATGGTTTCTGATGGTTTGCCTCCAGATATTATGACATACAACTTTCTGTTAGATGG 179
| |||||| |||||||| ||||||| ||||| || ||||||| | |||||||||||||
Sbjct 1362 AAAGATGGTATCTGATGGCGTGCCTCCCGATATCATAACATACAGCATTCTGTTAGATGG 1421
Query 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGG 217
|||||||||| |||||||||| ||||||||||||||||
Sbjct 1422 ACTCTGTAAATATGGGAAGCTGGAGAAAGCATTGGTGG 1459
> AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665
REVERSE LENGTH=1893
Length=1893
Score = 448 bits (242), Expect = 4e-125
Identities = 317/354 (90%), Gaps = 2/354 (1%)
Strand=Plus/Plus
Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275
|||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 1539 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAATCTCAGCCTTAAAGGAGTGAA 1598
Query 276 GCCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGA 335
||| |||||| || | |||||||||||||| |||||||| ||| ||||||||| ||||||
Sbjct 1599 GCCGGATGTTGTAGCGTACAATACAATGATATCAGGATTTTGTAGGAAAGGTTCAAAGGA 1658
Query 336 GGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGG-TA 394
|||||||||| |||| || ||| ||||||||||||||||| |||||||| | || || |
Sbjct 1659 GGAAGCAGATGCCTTATTTAAAGAAATGAAAGAAGATGGGACTCTTCCAAACAGCGGTTG 1718
Query 395 CTTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAAC 454
| ||||||||||| |||||||| | |||||||||||||||| || ||||||||||||||
Sbjct 1719 C-TATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAGAGAAGCATCAGCTGAAC 1777
Query 455 TCATCAAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTGA 514
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1778 TCATCAAAGAAATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTCA 1837
Query 515 CTAATATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
|||||||| | |||||||||||||||||||||||||| || || ||||||||||
Sbjct 1838 CTAATATGTTACATGATGGGAGATTGGACAAAAGCTTCCTCGATATGCTTTCTT 1891
Score = 281 bits (152), Expect = 4e-75
Identities = 197/218 (90%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 1 ATGGAACTCTTTCG-GAACATGTCTCAAAGAGGATTGGTTGGAAACACAGTCACTTACAA 59
|||||| |||| || | | ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1246 ATGGAAGTCTTCCGTG-AGATGTCTCAAAGAGGATTGGTTGGCAACACTGTCACTTACAA 1304
Query 60 CACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAA 119
|| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1305 CATTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAAATATTCAA 1364
Query 120 AGTGATGGTTTCTGATGGTTTGCCTCC-AGATATTATGACATACAACT-TTCTGTTAGAT 177
|| |||||| |||||||| ||||||| | ||||||||||||||||| || ||||||||
Sbjct 1365 AGAGATGGTATCTGATGGCGTGCCTCCCA-ATATTATGACATACAACACTT-TGTTAGAT 1422
Query 178 GGACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGT 215
||||| ||||||||||||||||||||||||||| ||||
Sbjct 1423 GGACTTTGTAAAAATGGGAAGCTAGAGAAAGCAATGGT 1460
> AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23489840-23491519 FORWARD LENGTH=1680
Length=1680
Score = 427 bits (231), Expect = 5e-119
Identities = 311/350 (89%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 221 GGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTG 280
|||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1331 GGAAGGTGGATGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTA 1390
Query 281 ATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTA-AAGGAGGAA 339
||||| ||||||||||||| ||||||||||| || ||| | ||| | || | |||||
Sbjct 1391 ATGTTGTAACCTACAATACCATGATCTCAGGCTTGTGTAGTAAACGCCTATTA-CAGGAA 1449
Query 340 GCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTAT 399
|| || ||||| | ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1450 GCTTATGCCTTGCTAAAAAAAATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACATAT 1509
Query 400 AATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 459
||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1510 AATACACTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 1569
Query 460 AAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGT-GACTAA 518
| ||| |||||||||||| |||||| ||||||||||||||||||||||||||| | ||||
Sbjct 1570 AGAGAAATGAGGAGTTGCAGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCG-CTAA 1628
Query 519 TATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
|||| |||||||||||||||| ||||||||||| || || ||||||||||
Sbjct 1629 TATGTTGCATGATGGGAGATTAGACAAAAGCTTCCTCGATATGCTTTCTT 1678
> AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23176930-23179248 REVERSE LENGTH=2212
Length=2212
Score = 422 bits (228), Expect = 2e-117
Identities = 310/350 (89%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 221 GGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTG 280
|||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1606 GGAAGGTGGATGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTA 1665
Query 281 ATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTA-AAGGAGGAA 339
||||| ||||||||||||| ||||||||||| || ||| | ||| | || | |||||
Sbjct 1666 ATGTTGTAACCTACAATACCATGATCTCAGGCTTGTGTAGTAAACGCCTATTA-CAGGAA 1724
Query 340 GCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTAT 399
|| || ||||| | ||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 1725 GCTTATGCCTTGCTAAAAAAAATGAAAGAAGACGGGCCTCTTCCAAATAGTGGTACATAT 1784
Query 400 AATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 459
||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1785 AATACACTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 1844
Query 460 AAAGAGATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGT-GACTAA 518
| ||| |||||||||||| |||||| ||||||||||||||||||||||||||| | ||||
Sbjct 1845 AGAGAAATGAGGAGTTGCAGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCG-CTAA 1903
Query 519 TATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
|||| |||||||||||||||| ||||||||||| || || ||||||||||
Sbjct 1904 TATGTTGCATGATGGGAGATTAGACAAAAGCTTCCTCGATATGCTTTCTT 1953
> AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23419396-23421579 FORWARD LENGTH=2049
Length=2049
Score = 342 bits (185), Expect = 2e-93
Identities = 297/349 (85%), Gaps = 15/349 (4%)
Strand=Plus/Plus
Query 223 AAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTGAT 282
||||||| ||| | |||| ||||||||||||||||||| | | | |||||||||
Sbjct 1555 AAGGTGGGAGAAGCGTGGGATTTATTTTGTAGCCTCAG-C-------A-TTAAGCCTGAT 1605
Query 283 GTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTA-AAGGAGGAAGC 341
||| |||| ||||||||||||||||||||||| ||| | ||| | || | |||||||
Sbjct 1606 GTTGTAACATACAATACAATGATCTCAGGATTGTGTAGTAAACGCCTACTA-CAGGAAGC 1664
Query 342 AGAT-ACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTATA 400
|||| ||| |||||| |||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 1665 AGATGACC-TGTTCAGAAAAATGAAAGAAGATGGTACTCTTCCAAATAGTGGTACATATA 1723
Query 401 ATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCA 460
|||||||||| || || | ||||||||| |||||| ||| |||||||| ||||||||||
Sbjct 1724 ATACGCTTATCAGAGCAAACCTTAGAGATTGTGACAGAGCCGCATCAGCAGAACTCATCA 1783
Query 461 AAGAGATGAGGAGTTGC-GGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTGACTAAT 519
|||| |||||||||| | ||||||| ||||||||||||||||||| |||||||||| |||
Sbjct 1784 AAGAAATGAGGAGTT-CTGGGTTTGTTGGAGATGCTTCAACCATTAGCTTGGTGACAAAT 1842
Query 520 ATGCTGCATGATGGGAGATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1843 ATGTTGCATGATGGGAGATTGGACAAAAGCTTTCTCAATATGCTTTCTT 1891
> AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23507320-23509053 FORWARD LENGTH=1734
Length=1734
Score = 250 bits (135), Expect = 1e-65
Identities = 165/180 (92%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 275
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1551 GGCAGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAA 1610
Query 276 GCCTGATGTTATAACCTACAATACAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGA 335
|||||||| |||| |||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 1611 ACCTGATGTAATAATTTACAATACTATGATCTCAGGATTTTGTAGGAAAGGTTTAAAGGA 1670
Query 336 GGAAGCAGATACCTTGTTCaaaaaaaTGAAAGAAGATGGGCCTCTTCCAGATAGTGGTAC 395
||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 1671 AGAAGCAGATGCCTTGTTCAGAAAAATGAGAGAAGATGGGCCTCTTCCAGATAGCGGTAC 1730
> AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23301576-23303162 FORWARD LENGTH=1587
Length=1587
Score = 86.1 bits (46), Expect = 3e-16
Identities = 55/59 (93%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 216 GGCAAGGAAGGTGGAAGATGGGTGGAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGA 274
|||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1530 GGCAGGGAA-GTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGA 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5