BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475045
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63030.1 | Symbols: ddf2 | Integrase-type DNA-binding superf... 1074 0.0
> AT1G63030.1 | Symbols: ddf2 | Integrase-type DNA-binding superfamily
protein | chr1:23367407-23368410 REVERSE LENGTH=823
Length=823
Score = 1074 bits (581), Expect = 0.0
Identities = 695/749 (93%), Gaps = 12/749 (2%)
Strand=Plus/Plus
Query 1 AAAGCTTCATTTCAATTCTATTTCGAGAACCCTTTGTGAACCAGATCGGATATGGAAAAC 60
||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 31 AAAGCTTCATTTCAATTCTGTTTCGAGAACCCTTTGAGAACCAGATCGGAGATGGAAAAC 90
Query 61 GACGACATCACCGTGGCGGAGATGAAGCCAAAGAAGCGTGCTGGACGGAAGATTTTCAAG 120
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 91 GACGATATCACCGTGGCGGAGATGAAGCCAAAGAAGCGTGCTGGACGGAGGATTTTCAAG 150
Query 121 GAGACACGTCACCCAATCTACAGAGGTGTGCGGCGTAGGAACGGCGACAAATGGGTCTGC 180
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct 151 GAGACACGTCACCCAATCTACAGAGGCGTGCGGCGTAGGGACGGCGACAAATGGGTATGC 210
Query 181 GAAGTCCGTGAACCGATTCATCAGCGCCGAGTCTGGCTCGGAACTTATCCGACGGCGGAG 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 211 GAAGTCCGTGAACCGATTCATCAGCGTCGAGTCTGGCTCGGAACTTATCCGACGGCAGAT 270
Query 241 ATGGCGGCTCGTGCTCACGACGTGGCGGTTCTTGCTCTGCGCGGGAGATCCGCGTGTTTG 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 ATGGCCGCACGTGCTCACGACGTGGCGGTTCTTGCTCTGCGCGGGAGATCCGCGTGTTTG 330
Query 301 AATTTCTCTGATTCCGCTTGGCGGTTGCCGGTGCCAGAATCAACTGATCCAGACACGATC 360
|||||||| ||||| |||||| ||||||||||||| | ||| |||||||| |||||||||
Sbjct 331 AATTTCTCCGATTCTGCTTGGAGGTTGCCGGTGCCGGCATCCACTGATCCGGACACGATC 390
Query 361 CGGCGTACCGCGGCCGAAGCAGCGGAGATGTTCAGGCCGCCGGAGTTTAGTACTGGAATT 420
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 391 AGGCGCACGGCGGCCGAAGCAGCGGAGATGTTCAGGCCGCCGGAGTTTAGTACAGGAATT 450
Query 421 ACGGTTTTACCCTCAGCCAGTGAGTTTGACACGTCGGATGAGGGAGTCGCCGGAATGATG 480
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 451 ACGGTTTTACCCTCAGCCAGTGAGTTTGACACGTCGGATGAAGGAGTCGCTGGAATGATG 510
Query 481 ATGAGGCTCGCGGAGGAGCCGTTGATGTCGCCGCCAAGATCGTACATTGATATGAATACG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ATGAGGCTCGCGGAGGAGCCGTTGATGTCGCCGCCAAGATCGTACATTGATATGAATACG 570
Query 541 AATATGTACGTGGAAGAAGAAATGTATTACGAAGACTTGTCACTTTGGAGTTACTAAAAT 600
| | |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 571 AGTGTGTACGTGGACGAAGAAATGTGTTACGAAGATTTGTCACTTTGGAGTTACTAAAAT 630
Query 601 ACGTATGTGT-AATAAAACCAAA-ATAAAAAGT-TATATATTTGCATAATAAATGGGCAT 657
|||||||||| || ||||||||| || | || ||| ||| ||||||||||||||| |
Sbjct 631 ACGTATGTGTTAA-AAAACCAAAGATCGTATGTGTATGTAT--GCATAATAAATGGGCTT 687
Query 658 AATGATGGGCTTAAATATGATAGGTCCAACCTATAATGTTAAATGTGTTTT-TT----GG 712
|||||||||| || |||||||||||||| |||||| ||||||||||||||| || ||
Sbjct 688 AATGATGGGCATAGATATGATAGGTCCAGCCTATA-TGTTAAATGTGTTTTATTTTTTGG 746
Query 713 TTTACCTAGTTTCCTAGGTATTTACTAAA 741
|||| |||||||||||||||||||| |||
Sbjct 747 TTTATCTAGTTTCCTAGGTATTTACCAAA 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5