BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475053
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62990.1 | Symbols: KNAT7, IXR11 | KNOTTED-like homeobox of ... 1672 0.0
> AT1G62990.1 | Symbols: KNAT7, IXR11 | KNOTTED-like homeobox of
Arabidopsis thaliana 7 | chr1:23337365-23340688 FORWARD LENGTH=1319
Length=1319
Score = 1672 bits (905), Expect = 0.0
Identities = 1199/1327 (90%), Gaps = 75/1327 (6%)
Strand=Plus/Plus
Query 1 ctctctctctctctTTCTCCAATCATATGAACAAAATAATCGGCTTCAAGAATTAGGGTT 60
|||||||||||||||| || ||||||| |||| | |||| ||||||||||||||||||
Sbjct 1 CTCTCTCTCTCTCTTTTTCTAATCATACGAAC---ACAATCTGCTTCAAGAATTAGGGTT 57
Query 61 TTGATCAGTCACAAAAACGTA--TCTCT-C--TC------C---G-TATGCAAGAAGCGG 105
|||||||| |||||||| ||| ||||| | || | | ||||||||||||||
Sbjct 58 TTGATCAGACACAAAAA-GTATCTCTCTCCGGTCTTGTGTCAAGGTTATGCAAGAAGCGG 116
Query 106 CGCTAGGTATGATCGGAGCCACCGTAGGCGGAGACGGAGACGCCCCGG-CGGTGGCGGAG 164
| ||||||||||| ||||||||||||||||||||||||||| || ||| | |||||||||
Sbjct 117 CACTAGGTATGATGGGAGCCACCGTAGGCGGAGACGGAGACACCGCGGTC-GTGGCGGAG 175
Query 165 CAGAATAGACAGATGAAAGGTGAGATAGCGACACATCCGATGTATGAGCAGTTATTGGCC 224
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 176 CAGAATAGACAGTTGAAAGGTGAGATAGCGACACATCCGATGTATGAGCAATTATTAGCC 235
Query 225 GCACACGTGGCGTGTCTAAGAGTAGCTACTCCGATAGATCAACTTCCGATCATTGAAGCT 284
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 236 GCACACGTGGCGTGTTTAAGAGTAGCTACTCCAATAGATCAACTTCCGATCATTGAAGCT 295
Query 285 CAGCTTTCTCAATCTCATCATCTTCTTCGTTCTTACGCTTCCACCGCCGTTGGATACTCC 344
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 296 CAGCTTTCTCAATCTCATCATCTTCTCCGTTCTTACGCTTCCACGGCCGTTGGATA---C 352
Query 345 CACCATGATCG---CGAGCTCGATAATTTCTTGGCACAATATATAATGGTGTTGTGTAGC 401
|| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 353 CATCATGATCGTCACGAGCTCGATAATTTCTTGGCACAATATGTAATGGTGTTGTGTAGC 412
Query 402 TTCAAAGAACAGCTGCAACAGCACGTGAGGGTTCATGCCGTCGAAGCTGTTATGGCTTGC 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TTCAAAGAACAGCTGCAACAGCACGTGAGGGTTCATGCCGTCGAAGCTGTTATGGCTTGC 472
Query 462 CGTGAAATTGAGAACAATCTTCATTCTCTTACAGGAGCAACGTTAGGAGAAGGGTCAGGT 521
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 473 CGTGAAATTGAGAACAACCTTCATTCTCTTACAGGAGCAACTTTAGGAGAAGGGTCGGGT 532
Query 522 GCGACTATGTCGGAGGATGAGGATGATATTCAGATGGACTTCTCGTCTGATAATTCCGGC 581
||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||
Sbjct 533 GCGACTATGTCGGAGGATGAGGATGATCTTCCGATGGATTTCTCGTCAGATAATTCCGGC 592
Query 582 GTTGATTTTAGCGGCGGCCACGATATGACGGGATTTGGACCGTTGCTACCGACTGAATCG 641
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 593 GTTGATTTTAGCGGCGGCCACGATATGACGGGATTTGGTCCGTTGCTACCGACTGAATCG 652
Query 642 GAAAGATCTCTTATGGAAAGAGTCAGACAAGAACTTAAACTCGAACTCAAACAGGGTTTT 701
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 653 GAAAGATCCCTTATGGAAAGAGTCAGACAAGAACTCAAACTAGAACTCAAACAGGGTTTT 712
Query 702 AAATCAAGAATTGAAGATGTAAGAGAAGAGATAATGAGGAAAAGAAGGGCTGGGAAATTG 761
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 713 AAATCGAGAATCGAAGATGTAAGAGAAGAGATAATGAGGAAGAGAAGGGCTGGGAAATTG 772
Query 762 CCAGGAGACACAACTACTGTCTTGAAAAATTGGTGGCAACAACATTGCAAGTGGCCTTAC 821
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 773 CCAGGAGACACAACTACTGTCTTGAAAAATTGGTGGCAACAACATTGCAAATGGCCTTAC 832
Query 822 CCTACTGAAGATGACAAGGCAAAATTGGTGGAGGAGACAGGATTGCAGTTGAAGCAAATC 881
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CCTACGGAAGATGACAAGGCAAAATTGGTGGAGGAGACAGGATTGCAGTTGAAGCAAATC 892
Query 882 AACAATTGGTTCATTAACCAACGCAAGAGGAATTGGCACAACAACTCTCACTCGCTCACT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 893 AACAATTGGTTCATTAACCAACGCAAGAGGAATTGGCACAACAACTCTCACTCCCTCACT 952
Query 942 TCCTTGAAGTCCAAGCGCAAACACTAATCTCTTCTTACTATATT--T--C-A--T--AC- 991
|||||||||||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 953 TCCTTGAAGTCCAAGCGCAAACACTAATCTCTTCTTACTATATTAGTTACTACCTCTACA 1012
Query 992 TA-ATT-A--C-A-T--CGCT--TAA-ATCATGCATGATATATATGTAATTCATGTTGTT 1040
|| ||| | | | | | || ||| | ||||||||||| ||| |||||||||||| |
Sbjct 1013 TATATTCATACTAATTACACTGCTAAGA-CATGCATGATACATACGTAATTCATGTTACT 1071
Query 1041 GATAAAAACGAGGTGTGATCATTAATATCTTGTACT-ACTTA-CTTA---GCT------- 1088
||||| ||||||||||||||||||||||| |||||| ||||| |||| | |
Sbjct 1072 GATAATAACGAGGTGTGATCATTAATATCATGTACTTACTTAGCTTATTAGATCCACCGA 1131
Query 1089 -TA-TATATGATTTGTGCTTTGAGTGATTACTGTTTATTACTAGATTGTAATTCAttttt 1146
|| |||||||||||||| ||| |||||||||| || ||||||||||||||||||||||
Sbjct 1132 CTACTATATGATTTGTGCGTTGCGTGATTACTGGTTGTTACTAGATTGTAATTCATTTT- 1190
Query 1147 ttgttttttATTGTGCATTCAAATATAtttttttGGTACGAATTGAACACCCTAATTTTG 1206
|||| | ||||||||||||||| ||| ||||||||| | |||||| | ||||||
Sbjct 1191 --GTTTGT-ATTGTGCATTCAAATTTATCTTTTTGGTA--A---GAACAC--TGATTTTG 1240
Query 1207 TAACGTGTTTTCCGTGGTTGACTAGACCATCATTTGGAAATATATAAGTAATGATGCCGA 1266
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1241 TAACGTGTTTTCCGTGGATGACTAGACCATCATTTGGAAATATA-AAGTAATGATGCCGA 1299
Query 1267 CAAAAAA 1273
|||||||
Sbjct 1300 CAAAAAA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5