BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475054
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62981.1 | Symbols: | Protein of unknown function (DUF1191)... 1755 0.0
> AT1G62981.1 | Symbols: | Protein of unknown function (DUF1191)
| chr1:23333672-23334982 FORWARD LENGTH=1311
Length=1311
Score = 1755 bits (950), Expect = 0.0
Identities = 1117/1197 (93%), Gaps = 13/1197 (1%)
Strand=Plus/Plus
Query 1 aaaaa-aaaaGAGAAACTCATTTCTCATGATCGACTCTTCCTCTACACTTCTTCTTCTCA 59
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 8 AAAAAGAAAAGAGAAACTCATTTCTCATGATCGACTCTTCCTCTACACTTCTTCATCGCA 67
Query 60 TCTTCTCATCA---CAACACTCAAACGTGAACAATAACTCCACCAATATCGAAAATGGTA 116
||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 68 TCTTCTCATCACCTCAACATTCAAACGTGAACAATTACTCCACCAATATCGAAAATGGTA 127
Query 117 ACACCAACACTCTATCTTCCCTTTCTTCAACTAATAATAATCGTATTATTCCTCTTCCTT 176
|||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 128 ACACTAACACTCTATCCTCCCTCTATTCAACTAATAATAATCGTATTATTCCTCTTCCTT 187
Query 177 CCTTCTCATCTAGAGGGTTCGACTTCTTctactactactactactactCAAGAAGCTCTC 236
|| ||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 188 CCCTCTCATCTAGAGGGTTCGA------CT--T-CTACTACTACTACTCAAGAAGCTCTC 238
Query 237 AACGAATCCTCAAGGCTTCTTGATCTCATTATAAGAGACTACACTCTCAACTTCTTCAAG 296
|| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 239 AATGAATCCTCAAGGCTTCTTGATCTCATTCTAAGAGATTACACTCTCAACTTCTTCAAG 298
Query 297 AACCAACGTTATTCAATCAAGACCGGTGTTCCACGGCGTGTTCATCTCCCGTCTAACTAC 356
||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 299 AACCAACATTATTCTATCAAGACCGGTGTTATTCGGCGTGTTCATCTCCCGTCTGACTAC 358
Query 357 TCCGGCATAAAACTTGACGCCGTTAGGTTCCGGTGTGGGAGTCTCCGGCGATACGGAGCT 416
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 TCCGGCATAAAACTTGACGCCGTTAGGTTCCGGTGTGGGAGTCTCCGACGATACGGAGCA 418
Query 417 CAAATCGAAGAGTTCCATATTGGCGTTGGAGCAATTCTTGAGCCGTGTGGTGAGCGTCTT 476
|||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 419 AAAATCGAAGAATTCAATATTGGCGTTGGAGCTATTCTTGAGCCGTGTGGTGAACGTCTT 478
Query 477 TTGGTTGTGAAACAAAGCCTGGGATCAAACTGGTCCGATATATATTACAAAAACTATGAT 536
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 479 TTGGTTGTGAGACAAAGCTTGGGATCAAAGTGGTCCGATATATATTACAAAAACTATGAT 538
Query 537 CTCTCCGGTTATAAACTCGTGTCTCCGGTTCTAGGGCTCTTAGCTTATAACGCGTTAAAT 596
||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 CTCTCCGGTTATAGACTTGTGTCTCCGGTTCTAGGGCTCTTAGCTTATAACGCATTAAAC 598
Query 597 GACGTAGTTTTAGGGAATAATGTGAGCAGCTCTTATCAGATAAGTCTCCTCCTTGCCGGT 656
|| || |||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||
Sbjct 599 GATGTTGTTTTAGGGAATAACGTGAGTAGCTCTTATCAGATAAGTCTCCTCCTAGCCCGT 658
Query 657 GCTAAAGATCCATCGACCGTTGATTTTGGGAACGTTTCTGGACCGTCGGTGGTAGAGAGA 716
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACTAAAGATCCATCCAACGTTGATTTTGGGAACGTTTCTGGACCGTCGGTGGTAGAGAGA 718
Query 717 ACGTTCTTGAATAAGCCAATGTGCGCTACTTTTGAGCTCGACGGAAAAGTAACGTTTGCC 776
||||||||||||||||||||||||||||||||||| || || |||||||||||| |||||
Sbjct 719 ACGTTCTTGAATAAGCCAATGTGCGCTACTTTTGAACTTGATGGAAAAGTAACGCTTGCC 778
Query 777 GGAGAAGTGAAGCCGTTTGTGTGCGCCGTTAAAACCAACGGACATTTTGGTTTAGTGGTA 836
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 779 GCCGAAGTGAAGCCGTTTGTGTGCGCCGTTAAAACCAATGGACATTTTGGTTTAGTGGTG 838
Query 837 ACGGATGATCCAAAATCGAATGGTGGAGGCGAGAAGGAGATGAAGAAGGAGAAGATCGGA 896
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 839 ACGGATGATCCAAAATCGAATGGTGGAGGAGAAAAGGAGATGAAGAAGGAGAAGATCGGA 898
Query 897 CGGTGGAGAAAGGTTGTTGGAGGGCTTGTtgggtctgtgacggtgggggtggtgctttta 956
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGGTGGAGGAAGGTTGTTGGAGGGCTTGTTGGGTCTGTGACGGTGGGGGTGGTGCTTTTA 958
Query 957 gggctggtggtggcggctgcggtggtggtggcgaagaagaggcggagaagggaaaaaagg 1016
|||||||||||||||||||| || ||| ||| ||||| ||| | ||||||| |||||||
Sbjct 959 GGGCTGGTGGTGGCGGCTGCTGTAGTGACGGCAAAGAAAAGGAGAAGAAGGGCAAAAAGG 1018
Query 1017 gaagaaatggagagaaaagcttatgaagaagaagCTCTTAGAGTAGTGTCAATGGTGGGG 1076
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 GAAGAAATGGAGAGAAAAGCTTATGAAGAAGAAGCTTTTAGAGTAGTGTCAATGGTGGGG 1078
Query 1077 CATTCTAGGGCTTTCGTTGCTTCTGCTACAAGGACTTCTCCACGTTTCATGGAACATGAG 1136
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1079 CATTCTAGGGCTTTCGTTGCTTCTGCTACAAGGACTTCTCCAGGTTTCATGGAATATGAG 1138
Query 1137 TTTGTTCCTAATTAATTAAATATATTTACGTGTTATTCCGTTTTTGTGGAttttttt 1193
||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||
Sbjct 1139 TTTGTTCCTAATTAATTAATTATATTTACGTGTGATTCCGTTTTTGTGGATTGTTTT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5