BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475054 Length=1193 Score E Sequences producing significant alignments: (Bits) Value AT1G62981.1 | Symbols: | Protein of unknown function (DUF1191)... 1755 0.0 > AT1G62981.1 | Symbols: | Protein of unknown function (DUF1191) | chr1:23333672-23334982 FORWARD LENGTH=1311 Length=1311 Score = 1755 bits (950), Expect = 0.0 Identities = 1117/1197 (93%), Gaps = 13/1197 (1%) Strand=Plus/Plus Query 1 aaaaa-aaaaGAGAAACTCATTTCTCATGATCGACTCTTCCTCTACACTTCTTCTTCTCA 59 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 8 AAAAAGAAAAGAGAAACTCATTTCTCATGATCGACTCTTCCTCTACACTTCTTCATCGCA 67 Query 60 TCTTCTCATCA---CAACACTCAAACGTGAACAATAACTCCACCAATATCGAAAATGGTA 116 ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 68 TCTTCTCATCACCTCAACATTCAAACGTGAACAATTACTCCACCAATATCGAAAATGGTA 127 Query 117 ACACCAACACTCTATCTTCCCTTTCTTCAACTAATAATAATCGTATTATTCCTCTTCCTT 176 |||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 128 ACACTAACACTCTATCCTCCCTCTATTCAACTAATAATAATCGTATTATTCCTCTTCCTT 187 Query 177 CCTTCTCATCTAGAGGGTTCGACTTCTTctactactactactactactCAAGAAGCTCTC 236 || ||||||||||||||||||| || | |||||||||||||||||||||||||| Sbjct 188 CCCTCTCATCTAGAGGGTTCGA------CT--T-CTACTACTACTACTCAAGAAGCTCTC 238 Query 237 AACGAATCCTCAAGGCTTCTTGATCTCATTATAAGAGACTACACTCTCAACTTCTTCAAG 296 || ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 239 AATGAATCCTCAAGGCTTCTTGATCTCATTCTAAGAGATTACACTCTCAACTTCTTCAAG 298 Query 297 AACCAACGTTATTCAATCAAGACCGGTGTTCCACGGCGTGTTCATCTCCCGTCTAACTAC 356 ||||||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 299 AACCAACATTATTCTATCAAGACCGGTGTTATTCGGCGTGTTCATCTCCCGTCTGACTAC 358 Query 357 TCCGGCATAAAACTTGACGCCGTTAGGTTCCGGTGTGGGAGTCTCCGGCGATACGGAGCT 416 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 359 TCCGGCATAAAACTTGACGCCGTTAGGTTCCGGTGTGGGAGTCTCCGACGATACGGAGCA 418 Query 417 CAAATCGAAGAGTTCCATATTGGCGTTGGAGCAATTCTTGAGCCGTGTGGTGAGCGTCTT 476 |||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||||| Sbjct 419 AAAATCGAAGAATTCAATATTGGCGTTGGAGCTATTCTTGAGCCGTGTGGTGAACGTCTT 478 Query 477 TTGGTTGTGAAACAAAGCCTGGGATCAAACTGGTCCGATATATATTACAAAAACTATGAT 536 |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 479 TTGGTTGTGAGACAAAGCTTGGGATCAAAGTGGTCCGATATATATTACAAAAACTATGAT 538 Query 537 CTCTCCGGTTATAAACTCGTGTCTCCGGTTCTAGGGCTCTTAGCTTATAACGCGTTAAAT 596 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 539 CTCTCCGGTTATAGACTTGTGTCTCCGGTTCTAGGGCTCTTAGCTTATAACGCATTAAAC 598 Query 597 GACGTAGTTTTAGGGAATAATGTGAGCAGCTCTTATCAGATAAGTCTCCTCCTTGCCGGT 656 || || |||||||||||||| ||||| |||||||||||||||||||||||||| ||| || Sbjct 599 GATGTTGTTTTAGGGAATAACGTGAGTAGCTCTTATCAGATAAGTCTCCTCCTAGCCCGT 658 Query 657 GCTAAAGATCCATCGACCGTTGATTTTGGGAACGTTTCTGGACCGTCGGTGGTAGAGAGA 716 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 ACTAAAGATCCATCCAACGTTGATTTTGGGAACGTTTCTGGACCGTCGGTGGTAGAGAGA 718 Query 717 ACGTTCTTGAATAAGCCAATGTGCGCTACTTTTGAGCTCGACGGAAAAGTAACGTTTGCC 776 ||||||||||||||||||||||||||||||||||| || || |||||||||||| ||||| Sbjct 719 ACGTTCTTGAATAAGCCAATGTGCGCTACTTTTGAACTTGATGGAAAAGTAACGCTTGCC 778 Query 777 GGAGAAGTGAAGCCGTTTGTGTGCGCCGTTAAAACCAACGGACATTTTGGTTTAGTGGTA 836 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 779 GCCGAAGTGAAGCCGTTTGTGTGCGCCGTTAAAACCAATGGACATTTTGGTTTAGTGGTG 838 Query 837 ACGGATGATCCAAAATCGAATGGTGGAGGCGAGAAGGAGATGAAGAAGGAGAAGATCGGA 896 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 839 ACGGATGATCCAAAATCGAATGGTGGAGGAGAAAAGGAGATGAAGAAGGAGAAGATCGGA 898 Query 897 CGGTGGAGAAAGGTTGTTGGAGGGCTTGTtgggtctgtgacggtgggggtggtgctttta 956 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CGGTGGAGGAAGGTTGTTGGAGGGCTTGTTGGGTCTGTGACGGTGGGGGTGGTGCTTTTA 958 Query 957 gggctggtggtggcggctgcggtggtggtggcgaagaagaggcggagaagggaaaaaagg 1016 |||||||||||||||||||| || ||| ||| ||||| ||| | ||||||| ||||||| Sbjct 959 GGGCTGGTGGTGGCGGCTGCTGTAGTGACGGCAAAGAAAAGGAGAAGAAGGGCAAAAAGG 1018 Query 1017 gaagaaatggagagaaaagcttatgaagaagaagCTCTTAGAGTAGTGTCAATGGTGGGG 1076 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1019 GAAGAAATGGAGAGAAAAGCTTATGAAGAAGAAGCTTTTAGAGTAGTGTCAATGGTGGGG 1078 Query 1077 CATTCTAGGGCTTTCGTTGCTTCTGCTACAAGGACTTCTCCACGTTTCATGGAACATGAG 1136 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1079 CATTCTAGGGCTTTCGTTGCTTCTGCTACAAGGACTTCTCCAGGTTTCATGGAATATGAG 1138 Query 1137 TTTGTTCCTAATTAATTAAATATATTTACGTGTTATTCCGTTTTTGTGGAttttttt 1193 ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| Sbjct 1139 TTTGTTCCTAATTAATTAATTATATTTACGTGTGATTCCGTTTTTGTGGATTGTTTT 1195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58584036015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5