BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475056
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62975.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1343 0.0
> AT1G62975.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:23328850-23330776 FORWARD
LENGTH=1085
Length=1085
Score = 1343 bits (727), Expect = 0.0
Identities = 981/1094 (90%), Gaps = 55/1094 (5%)
Strand=Plus/Plus
Query 1 CTACAACAAAAATCAAACC--A--AAAAGTAGTCATAGATATCAAATTCTAATGGATTTT 56
|||||| |||||||||||| | ||||||| ||||||||||||||||| |||||||| |
Sbjct 1 CTACAAGAAAAATCAAACCAAATTAAAAGTACTCATAGATATCAAATTCCAATGGATTGT 60
Query 57 GTTCATTCAATGTTTATGCCTGATTCAACCTACGAAGATGGATTACTATTTTCTGATTCT 116
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTCCTTCATTGTTTATGCCTGATTCAACCTACGAAGATGGATTACTATTTTCTGATTCT 120
Query 117 TTTCTTCTTTCGCCTTTTATATCATACCAAAACAATGATGTTTGCAATCCGATCACAAAC 176
||||||||||| || |||||||||||||||||||||||||||| | || |||||||||||
Sbjct 121 TTTCTTCTTTCTCCGTTTATATCATACCAAAACAATGATGTTTTCCATTCGATCACAAAC 180
Query 177 AAAATTGGTGGAAGCAATAAGAAACGAAGTTTGTGTGATA---CATATGGCGCGACTGAA 233
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct 181 AAAATTGGTGGAAGCAATAAGAAACGAAGTTTGTGTGATATAACATATGGTGCGAATGAA 240
Query 234 GCCAACAAGAATGATGATGATCGAGAAAGCAAGAAGGTGAAACATAGAGACATCGAAAGG 293
|||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 241 GCCAACAAAAATGATGATGATCGAGAGAGCAAGAAGATGAAACATAGAGACATTGAAAGG 300
Query 294 CAAAGAAGACAAGAAGTTTCATCTCTTTTCAAAAGTCTAAGAACTCTCTTGCCATTTCAA 353
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CAAAGAAGACAAGAAGTTTCATCTCTTTTCAAAAGACTAAGAACTCTCTTGCCATTTCAA 360
Query 354 TATATCCAGGGTAAACGCTCGACATCAGATCACATTTTCCAGGCAGTGAACTACATCAAA 413
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 361 TATATCCAGGGTAAACGCTCGACATCAGATCACATCGTGCAGGCAGTGAACTACATCAAA 420
Query 414 GACTTACAAA-CTAAGATCAAAGAACTCAACGAAAAGAGAAATCAGATTAAAAAA-TCCA 471
|||||||||| | || |||||||||||||||||||||||||||| | | |||||| || |
Sbjct 421 GACTTACAAATCAAA-ATCAAAGAACTCAACGAAAAGAGAAATCGGGTAAAAAAAGTC-A 478
Query 472 TA-CGGGG-CA-C-A--ACT-A--C---TATAGAGGAATGCACGAGTAGCTTATCATCA- 518
|| ||| || | | ||| | | ||||||||||||||| ||||| |||||||||
Sbjct 479 TATCGGCCACAACTACTACTCATTCAGCTATAGAGGAATGCACCAGTAGTTTATCATCAT 538
Query 519 -A-CA---TCAACATTATCATCAAGCTGCTCATGTGTAGGAGACAAACACATTACAGTTG 573
| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CAGCAGCATCAACACTATCATCAAGCTGCTCATGTGTAGGAGACAAACACATTACTGTTG 598
Query 574 TGGTCACGCCTTGTTTGGTTGGTGTTGAGATCATCTTGAGTTGTTGTCTCGGACGAAACA 633
||||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 599 TGGTCACACCTTGTTTAGTTGGTGTTGAGATCATCATAAGTTGTTGTCTCGGACGAAACA 658
Query 634 AGTCTTGTCTCTCGAGTGTTCTTCAAATGTTAGCTCAAGAACAAAGGCTCAGTGTAGTTA 693
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 AGTCTTGTCTCTCGAGTGTTCTTCAAATGTTAGCTCAAGAACAAAGGTTCAGTGTAGTTA 718
Query 694 GTTGCCTCTCATCTAGCCGGCAACAGAGATTCATGCACACCATTGTTTCTCAGGAGGATG 753
||||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 719 GTTGCCTCTCAGCTAGACGGCAACAGAGATTCATGCACACCATTGTTTCGCAGGTGGAGG 778
Query 754 ATGGCAAAAAGATCAATATATTGGATCTTAAGGATAAAATAATGAATATGTAGCC--ATG 811
|||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||| |||
Sbjct 779 ATGGCAAACAGATCAATATTTTGGAGCTTAAGGATAAAATAATGACTATGTAGCCCCATG 838
Query 812 TACAAGAAGAAATAT-AGTTGA-TATGAAAAATGCAAA-A--A---------A--TTGGA 855
|||||||||||| || |||| | ||||| ||||| ||| | | | |||||
Sbjct 839 TACAAGAAGAAA-ATTAGTT-ACTATGACAAATGAAAATATTACGTGGTTTGAAATTGGA 896
Query 856 ATTTTACTGAATTTCAATGTATGTATTATTTGAGTTGTTAGATACAAAGATCATGTTATT 915
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct 897 ATTTTACTGAATTTCAATGTATGCATTATTTGAGTTGTTAGATACTAAGATCATGCTATT 956
Query 916 TTAGTGTTTCGGCTTACTGT-TGAGTGCTTAGAGTTAAGGTTACAAACTAATGCTTGttt 974
||||||| |||||||||| | |||||||||||| |||| |||||||||||||||||||||
Sbjct 957 TTAGTGTATCGGCTTACT-TCTGAGTGCTTAGA-TTAATGTTACAAACTAATGCTTGTTT 1014
Query 975 ttcttttcttttctttttGTAAAATAATGCTTATTTTTCTTGGCATTCTAATTATGCTAT 1034
||| ||| |||| |||| ||||||||| | || ||||||||||||||||||||||| |||
Sbjct 1015 TTCATTT-TTTT-TTTT-GTAAAATAAAGTTTGTTTTTCTTGGCATTCTAATTATGATAT 1071
Query 1035 ATTTCATTTTAATT 1048
| ||||||||||||
Sbjct 1072 ACTTCATTTTAATT 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5