BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475057
Length=2626
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62970.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 3251 0.0
> AT1G62970.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:23323317-23326053 FORWARD LENGTH=2737
Length=2737
Score = 3251 bits (1760), Expect = 0.0
Identities = 2315/2569 (90%), Gaps = 93/2569 (4%)
Strand=Plus/Plus
Query 1 CTCTCTCTCCGACGGAGAAAAAG--TCTCCGACTGTGTAAAATGATGAACCATGGTGGTG 58
||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||
Sbjct 1 CTCTCTCTCCGACGGAGAAGAAGTCTCTCCGACTGTGTCAAATGATGAGCCATGGTGGTG 60
Query 59 GCGGCGGCGGAGGTAACGGAGGAGGAGGAGACGCTGAACGTATGCTAGCTCAAGCAGAGA 118
||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 GCGGCGGCGTAAGTAACGGAGGAGGAGGAGACGCTGAACGAATGCTAGCTCAAGCAGAGA 120
Query 119 AGCTACTCTTAAGCGGCGACTTAAACGGTTCAAAAACCTACGCGATCCGCGCATGCGAAG 178
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTACTCTTAAGCGGAGACTTAAACGGTTCAAAAACCTACGCGATCCGCGCATGCGAAG 180
Query 179 CCGATCACTCACTCGTAGACCACGCCGAGTTAATCCTCGCCGTCGCCGACACTCTAATCG 238
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 181 CCGATCACTCACTCGTAGACCACGCCGAACTAATCCTCGCCGTCGCTGACACTCTAGTCG 240
Query 239 CCGGAGAATCACGAATCAGAGGAACCACTTCCGATCTTCCCGACTGGTACGCCGTGCTCC 298
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 241 CCGGAGAATCACGAATCAGAGGAACAACCTCCGATCTTCCCGACTGGTACGCCGTTCTCC 300
Query 299 GTCTCGTTCGTTTAACTCACAACCCTGAACTCGTCGCGACTCAGTACAGTAGACTCGCCG 358
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 GCCTCGTTCGTTTAACTCACAACCCCGAACTCGTCGCGACTCAGTACAGTAGACTCGCCG 360
Query 359 TGTTGCTTAACCCGAGTCGGAATCGGTTTCCGTATTCTGAACAAGCTTTTAGGTTAATCT 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 TGTTGCTTAACCCGAGTCGGAATCGGTATCCGTATTCTGAACAAGCTTTTAGGTTAATCT 420
Query 419 CTGATGCTTGGTATGTTCTCTCTGATCCTTCTAGAAAGACATTGTATGATAGAGAATTGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTGATGCTTGGTATGTTCTCTCTGATCCTTCTAGAAAGACATTGTATGATAGAGAATTGC 480
Query 479 ATCTGAGTCAATTTGGGCAACTCGGTCAATTAGGGTTTCAGCTTTtcaatcaaacgccac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCTGAGTCAATTTGGGCAACTCGGTCAATTAGGGTTTCAGCTTTTCAATCAAACGCCAC 540
Query 539 aatctcagtctcaatctcctcaacatcatcagcaacaatctcaatcacctcaacatc--a 596
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 541 AATCTCAGTCTCAGTCTCCTCAACATCATCAGCAACAATCTCAATCGCCTCAACATCCTA 600
Query 597 ----GAACCAGACGGTGTCGTTTCAGAATCAGCAGTTACCATTTCAGCTTCATCAACCAC 652
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCAGAACCAAACAGTGTCGTTTCAGAATCAGCAGTTACCATTTCAGCTTCATCAACCAC 660
Query 653 ATTTTGCTCAAGCTGTTCAGACTCAGTCTCAGTCCCAGCAGCAAAGGTCTCAATTTGATC 712
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 ATTTTGCTCAAGCTGTTCAGACTCAGTCTCAGTCACAGCAGCAAAGGTCTCAATTTGATC 720
Query 713 AGCAGTTATTGCAGGAGCAACAACAAGCATCTTGGAGGCAACAGTTTGGTCAAGAGCAAA 772
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 721 AGCAGTTATTGCAGGAGCAACAACAAGCATCTTGGAGGCAACAGGTTGGTCAAGAGCATA 780
Query 773 GTAGTGGTTCGAGTAGTGATTGGAAAAGACCAGTGGAGGAAGAGAGGTTGATTAATTTGA 832
|||||||||||||| |||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 781 GTAGTGGTTCGAGTGGTGACTGGAAAAGACCAGTGGAAGAAGTGAGGTTGATTAATTTGA 840
Query 833 ACAATGCAACTGAAAGGGTTCAGTCCAGTCGTCGTTTTGCTGAGCCGGATCGGCCGCCTA 892
|||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||
Sbjct 841 ACAATGCAACTGAAAGGGTTCAATCTAGTCGTCGTTTTGCTGAGCCAGAGCGGCCGCCTA 900
Query 893 GTAGATCTTTTGAGGGATCTTCTCATAGGACTCCTTCAACAGATTTGACATGGGCGTCTA 952
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 901 GTAGATCCTTTGAGGGATCTTCTCATAGGACTCCTTCAACTGAATTGACATGGGCGTCTA 960
Query 953 AGCCTACTCCGGTGTCTGAGTCTGTAC--CA-T--G-GCA---A---T---A-T--TCGG 994
|||||||||| ||||||||| |||||| || | | || | | | | || |
Sbjct 961 AGCCTACTCCAGTGTCTGAGCCTGTACGTCACTCTGAGCTTGTACCGTGGCAATACTCTG 1020
Query 995 AGCCGGCTAGGCAGTATCAGTCATCAAGTAGGTCTAGTGAAGCTGCTCAACTCTCGCTGC 1054
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 AGCCGGCTAGGCAATATCAGTTATCTAGTAGGTCTAGTGAAGCTGCTCAACTCTCGCTGC 1080
Query 1055 TGCCTTGTGTTTCTGACTCACCTCATGCATCTCAGCCAACTCGCTCGAATCAGTCACATG 1114
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGCCTTCTGTTTCTGACTCATCTCATGCATCTCAGCCAACTCGCTCGAATCAGTCACATG 1140
Query 1115 CAGTCTCTAAACCGCAGCCTGTTTCTAAGCCACATCCGCCATTCCCAATGTCTCAGCCAC 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CAGTCTCTAAACCGCAGCCTGTTTCTAAGCCACATCCGCCATTCCCAATGTCTCAGCCAC 1200
Query 1175 CACCGACCTCTAACCCATTTCCATTGTCTCAGCCACCTTCGACCTCTAAGCCATTCCCTG 1234
||||||||||||||||||||||||||||||||||||| |||| ||||||||| || || |
Sbjct 1201 CACCGACCTCTAACCCATTTCCATTGTCTCAGCCACCATCGAACTCTAAGCCGTTTCC-G 1259
Query 1235 -TGAT-TCAGTCATCGCAAAAGTCTAAGCCTTTGCCGGTTTCTCAGTCATTACAAAAGTC 1292
|| | ||||||||||||||| |||||||| || || || |||||||||| |||||||||
Sbjct 1260 ATG-TCTCAGTCATCGCAAAACTCTAAGCCATTCCCAGTGTCTCAGTCATCACAAAAGTC 1318
Query 1293 AAAGCCATTGCCGGTCTCTCAGTCATCACAAAACTCTA-GCCCATTCCCGGTGTCTCAGC 1351
||||| |||| ||| |||||||||||||||| || | ||| ||| ||||| ||||||
Sbjct 1319 TAAGCCTTTGCTGGTTTCTCAGTCATCACAAAGGTCAAAGCC-ATTGCCGGTCTCTCAGT 1377
Query 1352 CATCATCAAA-CTCTAAGCCATTCTCCA-TGTCTCAGCCA-CAACCGGCCTCTAAGCCAT 1408
||| | |||| |||||| |||||| || ||||||||||| || | | ||||||||||
Sbjct 1378 CATTA-CAAAACTCTAACCCATTC-CCGGTGTCTCAGCCATCATCAAAC-TCTAAGCCAT 1434
Query 1409 T-CCCGGTTTCCCAACCAACA-CCAAACT-CTAAGCCATTCTCGATGTCTCAACCATCAT 1465
| |||| | || || ||| || || || |||| || ||| || |||| |||||| |
Sbjct 1435 TTCCCG-TGTCTCAGCCA-CAACCCG-CTTCTAACCCGTTCCCGGTGTCCCAACCAAGAC 1491
Query 1466 CGACTGCT-AGGCCTTTCCCAGCAT--CTCAGCCACCAGCGGCCT-CTAAGTCATTCCCC 1521
| | | || || || ||| | | || |||| ||| || || | | ||| | | || ||
Sbjct 1492 CAAATTCTCAG-CCATTCTC-G-ATGTCTCAACCATCATCGAC-TGCTAGGCCTTTTCC- 1546
Query 1522 ATC-TCTCAGCCCCCACCGACCTCTAAGCCATTCCC-AGTGTCTCAGCCACCTCCGGCCT 1579
| | |||||||| ||| || |||||||| ||||||| | | ||||||||||| || |||
Sbjct 1547 AGCATCTCAGCCACCAGCGGCCTCTAAGTCATTCCCTA-TCTCTCAGCCACCAACGACCT 1605
Query 1580 CTAAGCCATTTGTGACTCAGCCACCCAATACCTCTAAGCCAATGCCGGTATCTCAGCCAC 1639
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 CTAAGCCATTTGTGTCTCAGCCACCCAATACCTCTAAGCCAATGCCGGTATCTCAGCCAC 1665
Query 1640 CTATAACCTCTATGCCGTTGCCAGTGTCTCAGCCACCACCGGTATTTCAATCAACCCGTC 1699
||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1666 CTACAACCTCTAAGCCGTTGCCAGTGTCTCAGCCACCACCGACATTTCAATCAACCTGTC 1725
Query 1700 CCTCTCAGCCACCTGCAGCCTCTAGTTCTC-CTTCTCAACTGCCTCCTGTCTTCAATTCA 1758
|||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||
Sbjct 1726 CCTCTCAGCCACCTGCAGCCTCTAGTTCTCTCT-CTCCACTGCCTCCAGTCTTCAATTCA 1784
Query 1759 GCACAATCATTCCAGCCACCTACTGTCTCTACTACTCCCTCTCCGGTTCCAGCAGCCTCT 1818
| |||||||||||| ||||| |||| ||||||||||||||| | ||||||| ||||||
Sbjct 1785 ACTCAATCATTCCAGTCACCTCCTGTTTCTACTACTCCCTCTGCAGTTCCAGAAGCCTCG 1844
Query 1819 ACTATTCCATCTCCGGCTGCGCCTGCGCCAGTTTCTCAGCCAACTCGGGTTTTTAACCAA 1878
|||||||| ||||| |||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 1845 ACTATTCCTTCTCCACCTGCCCCTGCGCCAGTGGCTCAGCCAACTCACGTTTTTAACCAA 1904
Query 1879 ACCCCAACTGCTGAACAGACTCCAAAGAGTGGGGATGCAAGATCCGATTCTGAGCCGGAG 1938
|||||| || | ||||||||||| ||||| |||| ||||||| |||||||||||||||||
Sbjct 1905 ACCCCACCTCCAGAACAGACTCCCAAGAGCGGGGCTGCAAGAACCGATTCTGAGCCGGAG 1964
Query 1939 GTTCCGAGTTTCTGGACGACTTGTCCATACTGCTACGTGCTTTACGAGTATCCCGTCATT 1998
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1965 GTTTCGAGTTTCTGGACTACTTGTCCATACTGCTACGTGCTTTACGAGTATCCCATCATT 2024
Query 1999 TACGAGGAAAGGGTGCTTAAATGCCAAACTAAGAGCTGCAGGAGAGCTTACCAGGCAGTG 2058
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 TACGAGGAAAGCGTGCTTAAATGCCAAACTAAGAGCTGCAGGAGAGCTTACCAGGCAGTG 2084
Query 2059 AAGGTTCCTTCTCCGCCGCCAGTTACTGAAGAAGATAGTTACTATTGCTGTTGGGGTTTC 2118
|| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2085 AAAGTTCCTTCTCCACCGCCAGTTGCCGAAGAAGATAGTTACTATTGCTGTTGGGGTTTC 2144
Query 2119 TATCCAATAGGATTCTCAGAAGTG---ACTAAAATCCCAGTCAGTGGTTTACC--C-AAA 2172
|||||||||||||||||||||||| |||||||||||||||| |||||||| | |||
Sbjct 2145 TATCCAATAGGATTCTCAGAAGTGGTGACTAAAATCCCAGTCACTGGTTTACATACTAAA 2204
Query 2173 -TC--AGC-A--------CCCAAA--A--A---A-----CCATCTCCAAAGGTCTACTAT 2208
|| || | |||||| | | | |||||||||||||| ||||||
Sbjct 2205 ATCCCAGTGAGTGATTTACCCAAATCAGCACCCAAAAAACCATCTCCAAAGGTATACTAT 2264
Query 2209 TATGACGACGAAGAAGAAGATGATGATTCATACATAGATTCTGATCCTAGTGAGGATGAT 2268
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 2265 TATGACGACGAAGAAGAAGATGATGATTCATACATTGGTTCTGATCCTAGTGAGGACGAC 2324
Query 2269 GACGACGATGACTGGCTGATGAATGGTACAAAAAGAAGGAAGAATGTGAAGCAAAGTAAA 2328
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2325 GACGATGATGACTGGCTGATGAATGGTACAAAAAGGAGGAAGAATGTGAAGCAGAGTAAA 2384
Query 2329 GCTAAAGCATCAACCAAACCAAAACGTCAAAAAGTAATCGAGGTTGATTGAGTAAA---- 2384
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2385 GCTAAAGCAACAACCAAACCAAAACGTCAAAAAGTAATTGAGGTTGATTGAGTAAAATCA 2444
Query 2385 GTCGGGTAGGGAACAGAAAAAGAACAACTTCAGTAAGGCTCTCTCTGTTCTTCATTTCTG 2444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 GTCGGGTAGGGAACAGAAAAAGAACAACTTCAGTAAGGCTCTCTCTGTTCTTCATTTCTG 2504
Query 2445 GCTCTGTTGTTGTATTTT-AGTTGCAGTAGTTTCTCTTTATGTAGTGTA 2492
|||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 2505 GCTCTGTTGTTGTATTTTTAGTTGTAGTAGTTTCTGTTTATGTAGTGTA 2553
Score = 128 bits (69), Expect = 3e-28
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 2525 TTC-GGTTAAGTTTAGTAGCAATGGCTGTAACTTGTAATGTTTTGGTACCTCATTTTGGA 2583
||| |||||||||||| || | ||||||||||||||||||||||||| |||| |||||||
Sbjct 2634 TTCGGGTTAAGTTTAGAAGTAGTGGCTGTAACTTGTAATGTTTTGGTGCCTCTTTTTGGA 2693
Query 2584 TTAATGTAGTTTCTGGAAAAACTTGGAGAAG 2614
||||||||||||||||||||||||| |||||
Sbjct 2694 TTAATGTAGTTTCTGGAAAAACTTGCAGAAG 2724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130383884857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5