BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475062
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63320.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 795 0.0
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 497 4e-140
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 492 2e-138
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 473 6e-133
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 448 4e-125
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 440 6e-123
AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 424 6e-118
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 412 1e-114
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:23... 412 1e-114
AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 311 5e-84
AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 209 2e-53
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 130 2e-29
AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 95.3 6e-19
> AT1G63320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23488884-23489530 REVERSE LENGTH=570
Length=570
Score = 795 bits (430), Expect = 0.0
Identities = 527/573 (92%), Gaps = 10/573 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTCTTCCGCGAGATGTCACAGAGAGGATTGGTTGGCGATACAGTCACTTACACC 60
||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||
Sbjct 1 ATGGAACTCTTCCGCGAGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACACC 60
Query 61 ACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAAA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 ACTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAAATATTCAAA 120
Query 121 GAGATGGTTTCTGATGGTGTGCCTCCCAATCTCATGACATACAAC-TCTCTGTTAGATGG 179
|||||||| |||||||| ||||||||| || |||||||||||||| | ||||||||||||
Sbjct 121 GAGATGGTATCTGATGGCGTGCCTCCCGATATCATGACATACAACAT-TCTGTTAGATGG 179
Query 180 ACTCTGTAATAATGGGAAGCTAGAGAAAGCATTGGTGGTTGGGAAGGTGGAAGATGGGTG 239
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGGCAGGGAAGGTGGAAGATGGGTG 239
Query 240 GGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTAATGTTGTAACATACA-ATA 298
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 240 GGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTAATGTTGTAACCTACACA-A 298
Query 299 CAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGAAGCTTATGCGTTGCTaaaaa 358
||||||||||||| || |||| ||||||||| || ||||||| ||| | || | | ||
Sbjct 299 CAATGATCTCAGGATTCTGTAAGAAAGGTTTTAAGGAGGAAGCATATACCTTATTCAGAA 358
Query 359 aaaTGAAAGAAGATGGACCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418
Query 419 ATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCATCAGAGAAATGAGGAGTTGC- 477
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 419 ATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCAAAGAAATGAGGAGTTGCA 478
Query 478 GAGTTTGCTGGAGATGCTTCAACC-ATTGGCTTGGTCACTA-ATATGTTGCATGATGGGA 535
|| |||||||||||||||||||| || ||||||||||| | ||||||||||||||||||
Sbjct 479 GA-TTTGCTGGAGATGCTTCAACTTAT-GGCTTGGTCAC-AGATATGTTGCATGATGGGA 535
Query 536 GATTAGACAAAAGCTTTTTGGAAATGCTTTCTT 568
|||| |||||| | |||||||||||||| ||||
Sbjct 536 GATTGGACAAAGGATTTTTGGAAATGCTATCTT 568
> AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23489840-23491519 FORWARD LENGTH=1680
Length=1680
Score = 497 bits (269), Expect = 4e-140
Identities = 325/352 (92%), Gaps = 4/352 (1%)
Strand=Plus/Plus
Query 219 TGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCC 278
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TGGGAAGGTGGATGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCC 1388
Query 279 TAATGTTGTAACATACAATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAA-ACCAGG 337
|||||||||||| |||||||| |||||||||||||||||||| ||| | || || |||
Sbjct 1389 TAATGTTGTAACCTACAATACCATGATCTCAGGCTTGTGTAGTAAACGCCTATTAC-AGG 1447
Query 338 AAGCTTATGCGTTGCTaaaaaaaaTGAAAGAAGATGGACCTCTTCCAGATAGTGGTACTT 397
|||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1448 AAGCTTATGCCTTGCTAAAAAAAATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACAT 1507
Query 398 ATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCA 457
||||||| ||||| ||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 1508 ATAATACACTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACTCA 1567
Query 458 TCAGAGAAATGAGGAGTTGCGAG-TTTGCTGGAGATGCTTCAACCATTGGCTTGGTCACT 516
|||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||
Sbjct 1568 TCAGAGAAATGAGGAGTTGC-AGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCGCT 1626
Query 517 AATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAAATGCTTTCTT 568
||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 1627 AATATGTTGCATGATGGGAGATTAGACAAAAGCTTCCTCGATATGCTTTCTT 1678
Score = 246 bits (133), Expect = 1e-64
Identities = 193/221 (87%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 3 GGAACTCTTCCGCGAGATGTCACAGAGAGGATTGGTTGGCGATACAGTCACTTACACCAC 62
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1035 GGAACTCTTCCGCGAGATGTCTCATAGAGGATTGGTTGGCGATACAGTCACTTACACCAC 1094
Query 63 TCTTATCCAGGGG-TTATTTCAAGCTGGAGATTGTGATA-TGGCTCAAGAAC-TATTCAA 119
||||||||| ||| || ||||| | ||| || ||||||| || | ||| || | |||||
Sbjct 1095 TCTTATCCAAGGGCTT-TTTCATGATGGCGACTGTGATAATGCC-CAA-AAGGTTTTCAA 1151
Query 120 AGAGATGGTTTCTGATGGTGTGCCTCCCAATCTCATGACATACAAC-TCTCTGTTAGATG 178
| ||||||||||||||||||| ||||| || | |||||||||| | | | |||||||||
Sbjct 1152 ACAGATGGTTTCTGATGGTGTACCTCCTGATATAATGACATACAGCATTT-TGTTAGATG 1210
Query 179 GACTCTGTAATAATGGGAAGCTAGAGAAAGCATTGGTGGTT 219
||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1211 GACTCTGTAATAACGGGAAGCTAGAGAAAGCATTGGAGGTT 1251
> AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23176930-23179248 REVERSE LENGTH=2212
Length=2212
Score = 492 bits (266), Expect = 2e-138
Identities = 324/352 (92%), Gaps = 4/352 (1%)
Strand=Plus/Plus
Query 219 TGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCC 278
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TGGGAAGGTGGATGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCC 1663
Query 279 TAATGTTGTAACATACAATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAA-ACCAGG 337
|||||||||||| |||||||| |||||||||||||||||||| ||| | || || |||
Sbjct 1664 TAATGTTGTAACCTACAATACCATGATCTCAGGCTTGTGTAGTAAACGCCTATTAC-AGG 1722
Query 338 AAGCTTATGCGTTGCTaaaaaaaaTGAAAGAAGATGGACCTCTTCCAGATAGTGGTACTT 397
|||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||| |
Sbjct 1723 AAGCTTATGCCTTGCTAAAAAAAATGAAAGAAGACGGGCCTCTTCCAAATAGTGGTACAT 1782
Query 398 ATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCA 457
||||||| ||||| ||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 1783 ATAATACACTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACTCA 1842
Query 458 TCAGAGAAATGAGGAGTTGCGAG-TTTGCTGGAGATGCTTCAACCATTGGCTTGGTCACT 516
|||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||
Sbjct 1843 TCAGAGAAATGAGGAGTTGC-AGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCGCT 1901
Query 517 AATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAAATGCTTTCTT 568
||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 1902 AATATGTTGCATGATGGGAGATTAGACAAAAGCTTCCTCGATATGCTTTCTT 1953
Score = 246 bits (133), Expect = 1e-64
Identities = 193/221 (87%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 3 GGAACTCTTCCGCGAGATGTCACAGAGAGGATTGGTTGGCGATACAGTCACTTACACCAC 62
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1310 GGAACTCTTCCGCGAGATGTCTCATAGAGGATTGGTTGGCGATACAGTCACTTACACCAC 1369
Query 63 TCTTATCCAGGGG-TTATTTCAAGCTGGAGATTGTGATA-TGGCTCAAGAAC-TATTCAA 119
||||||||| ||| || ||||| | ||| || ||||||| || | ||| || | |||||
Sbjct 1370 TCTTATCCAAGGGCTT-TTTCATGATGGCGACTGTGATAATGCC-CAA-AAGGTTTTCAA 1426
Query 120 AGAGATGGTTTCTGATGGTGTGCCTCCCAATCTCATGACATACAAC-TCTCTGTTAGATG 178
| ||||||||||||||||||| ||||| || | |||||||||| | | | |||||||||
Sbjct 1427 ACAGATGGTTTCTGATGGTGTACCTCCTGATATAATGACATACAGCATTT-TGTTAGATG 1485
Query 179 GACTCTGTAATAATGGGAAGCTAGAGAAAGCATTGGTGGTT 219
||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1486 GACTCTGTAATAACGGGAAGCTAGAGAAAGCATTGGAGGTT 1526
> AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412730-23415149 FORWARD LENGTH=2420
Length=2420
Score = 473 bits (256), Expect = 6e-133
Identities = 321/352 (91%), Gaps = 6/352 (2%)
Strand=Plus/Plus
Query 220 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 1726
Query 280 AATGTTGTAACATACA-ATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGA 338
||||||||||| |||| | |||||||| ||||| || ||||||||||||||||| | ||
Sbjct 1727 AATGTTGTAACCTACACA-ACAATGATGTCAGGATTTTGTAGGAAAGGTTTAAAGGAAGA 1785
Query 339 AGCTTATGCGTTGCTaaaaaaaaTGAAAGAAGATGGACCTCTTCCAGATAGTGGTACTTA 398
||| |||| ||| | | | ||||||||||||| || |||||||||||||||||||| ||
Sbjct 1786 AGCAGATGCCTTGTTTAGAGAAATGAAAGAAGAAGGGCCTCTTCCAGATAGTGGTACATA 1845
Query 399 TAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCAT 458
|||||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1846 TAATACGCTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACTCAT 1905
Query 459 CAGAGAAATGAGGAGTTGCGAG-TTTGCTGGAGATGCTTCAACCATTGGCTTGGTCACTA 517
||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 1906 CAGAGAAATGAGGAGTTGC-AGGTTTGTTGGAGATGCTTCAACCATTGGCTTGGTCACTA 1964
Query 518 ATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAA-ATGCTTTCTT 568
|||||||||||||||||||||| |||||||||||| | || ||||||||||
Sbjct 1965 ATATGTTGCATGATGGGAGATTGGACAAAAGCTTTCTC-AAGATGCTTTCTT 2015
> AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=1773
Length=1773
Score = 448 bits (242), Expect = 4e-125
Identities = 314/349 (90%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 220 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 1482
Query 280 AATGTTGTAACATACA-ATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGA 338
||||||||||| |||| | |||||||| ||||| || ||||||||||||||||| | ||
Sbjct 1483 AATGTTGTAACCTACACA-ACAATGATGTCAGGATTTTGTAGGAAAGGTTTAAAGGAAGA 1541
Query 339 AGCTTATGCGTTGCTaaaaaaaaTGAAAGAAGATGGACCTCTTCCAGATAGTGGTACTTA 398
||| |||| ||| | | |||||||||||||||| ||||||||| |||| ||||| ||
Sbjct 1542 AGCAGATGCCTTGTTTGTAGAAATGAAAGAAGATGGGCCTCTTCCAAATAGCGGTACCTA 1601
Query 399 TAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCAT 458
||||||||| |||||||| | ||||||||||||||| ||||||||||| ||||||||||
Sbjct 1602 TAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACGAAGCAGCATCAGCTGAACTCAT 1661
Query 459 CAGAGAAATGAGGAGTTGCG-AGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTCACTA 517
|| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 1662 CAAAGAAATGAGGAGTTGCGGA-TTTGCTGGAGATGCTTCAACCTTTGGCTTGGTCACTA 1720
Query 518 ATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAAATGCTTTC 566
|||||||||||||||||||||| || ||||||||| |||| ||||||||
Sbjct 1721 ATATGTTGCATGATGGGAGATTGGATAAAAGCTTTCTGGACATGCTTTC 1769
> AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23387631-23390816 REVERSE LENGTH=3186
Length=3186
Score = 440 bits (238), Expect = 6e-123
Identities = 315/352 (89%), Gaps = 6/352 (2%)
Strand=Plus/Plus
Query 220 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1583 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAACCT 1642
Query 280 AATGTTGTAACATACAATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGAA 339
||||| || | |||||||||||||||||||| || |||| |||||||||||| |||||
Sbjct 1643 GATGTTATAGCCTACAATACAATGATCTCAGGATTCTGTAAGAAAGGTTTAAAGGAGGAA 1702
Query 340 GCTTATGCGTTGCTaaaaaaaaTGAAAGAAGATGGACCTCTTCCAGATAGTGGTACTTAT 399
|| ||| | ||| | | ||| ||||||||||| || |||||||||||||||||||| |||
Sbjct 1703 GCATATACCTTGTTCATAAAGATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACATAT 1762
Query 400 AATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCATC 459
||||||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1763 AATACGCTTATCAGGGCACATCTGAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATC 1822
Query 460 AGAGAAATGAGGAGTTGCGAG-TTTGCTGGAGATGCTTCAACC-ATTGGCTTGGTCACTA 517
| |||||||||||||||| || |||||||| ||||||||||| || ||||||||||| |
Sbjct 1823 AAAGAAATGAGGAGTTGC-AGGTTTGCTGGCGATGCTTCAACTTAT-GGCTTGGTCAC-A 1879
Query 518 -ATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAAATGCTTTCTT 568
|||||||||||||||||||||| |||||| | ||||||||| |||||||||
Sbjct 1880 GATATGTTGCATGATGGGAGATTGGACAAAGGATTTTTGGAAGTGCTTTCTT 1931
> AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23299057-23300958 FORWARD LENGTH=1902
Length=1902
Score = 424 bits (229), Expect = 6e-118
Identities = 311/351 (89%), Gaps = 4/351 (1%)
Strand=Plus/Plus
Query 220 GGGAAGGTGGAAGATGGGTGGG-ATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAG-C 277
|||||||||||||||||||||| || | ||||||| |||||||||||||||||| || |
Sbjct 1552 GGGAAGGTGGAAGATGGGTGGGAAT-TGTTTTGTAATCTCAGCCTTAAAGGAGTG-AGCC 1609
Query 278 CTAATGTTGTAACATACAATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGG 337
|||||||| || | |||||||||||||| ||||| || ||||||||||||| ||| |||
Sbjct 1610 CTAATGTTATAGCCTACAATACAATGATATCAGGATTTTGTAGGAAAGGTTCAAAGGAGG 1669
Query 338 AAGCTTATGCGTTGCTaaaaaaaaTGAAAGAAGATGGACCTCTTCCAGATAGTGGTACTT 397
|||| || | || |||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 1670 AAGCAGATTCCCTGTTAAAAAAAATGAAAGAAGATGGGCCTCTTCCAAATAGTGGTACCT 1729
Query 398 ATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCA 457
|||||||||| |||||||| | |||||||||||||||| || ||||||| |||||||||
Sbjct 1730 ATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAGAGAAGCATCAGCTGAACTCA 1789
Query 458 TCAGAGAAATGAGGAGTTGCGAGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTCACTA 517
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1790 TCAAAGAAATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTCACTA 1849
Query 518 ATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAAATGCTTTCTT 568
||||||| |||||||||||||| ||||||||||| | || ||||||||||
Sbjct 1850 ATATGTTACATGATGGGAGATTGGACAAAAGCTTCCTCGATATGCTTTCTT 1900
> AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308683 FORWARD LENGTH=2150
Length=2150
Score = 412 bits (223), Expect = 1e-114
Identities = 309/351 (88%), Gaps = 4/351 (1%)
Strand=Plus/Plus
Query 220 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 1599
Query 280 AATGTTGTAACATACAATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGAA 339
||||| ||| |||| ||||||||| ||||| || ||||||||||||||||| | |||
Sbjct 1600 AATGTAATAATTTACACTACAATGATATCAGGATTTTGTAGGAAAGGTTTAAAGGAAGAA 1659
Query 340 GCTTATGCGTTGCTaaaaaaaaTGAAAGAAGATGG-ACCTCTTCCAGATAGTGGTACTTA 398
|| |||| ||| | | | |||||||||||||||| || ||||||| |||||||||| ||
Sbjct 1660 GCAGATGCCTTGTTTAGAGAAATGAAAGAAGATGGGAC-TCTTCCAAATAGTGGTACCTA 1718
Query 399 TAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCAT 458
||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 1719 TAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCAT 1778
Query 459 CAGAGAAATGAGGAGTTGCGAGTTTGCTGGAGATGCTTCAACCATTGGCT-TGGTCACTA 517
|| ||||||||||||||||| ||||| ||||||||||||||| || | | |||| | ||
Sbjct 1779 CAAAGAAATGAGGAGTTGCGGGTTTGTTGGAGATGCTTCAACAATAAG-TATGGTGATTA 1837
Query 518 ATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAAATGCTTTCTT 568
|||||||||||||||||||||| || ||||||| | |||||||||| ||||
Sbjct 1838 ATATGTTGCATGATGGGAGATTGGAAAAAAGCTATCTGGAAATGCTGTCTT 1888
Score = 292 bits (158), Expect = 2e-78
Identities = 200/220 (91%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTCTTCCGCGAGATGTCACAGAGAGGATTGGTTGGCGATACAGTCACTTACACC 60
||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||| |
Sbjct 1243 ATGGAACTCTTCCGCGAGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACAAC 1302
Query 61 ACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAAA 120
||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1303 ACTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAAAAATATTCAAA 1362
Query 121 GAGATGGTTTCTGATGGTGTGCCTCCCAATCTCATGACATACAAC-TCTCTGTTAGATGG 179
||||||| |||||||| ||||||||| || |||| ||||||| | | ||||||||||||
Sbjct 1363 AAGATGGTATCTGATGGCGTGCCTCCCGATATCATAACATACAGCAT-TCTGTTAGATGG 1421
Query 180 ACTCTGTAA-TAATGGGAAGCTAGAGAAAGCATTGGTGGT 218
||||||||| || ||||||||| |||||||||||||||||
Sbjct 1422 ACTCTGTAAATA-TGGGAAGCTGGAGAAAGCATTGGTGGT 1460
> AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665
REVERSE LENGTH=1893
Length=1893
Score = 412 bits (223), Expect = 1e-114
Identities = 309/351 (88%), Gaps = 4/351 (1%)
Strand=Plus/Plus
Query 220 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 279
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1543 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAATCTCAGCCTTAAAGGAGTGAAGCCG 1602
Query 280 AATGTTGTAACATACAATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGAA 339
|||||||| | |||||||||||||| ||||| || ||||||||||||| ||| |||||
Sbjct 1603 GATGTTGTAGCGTACAATACAATGATATCAGGATTTTGTAGGAAAGGTTCAAAGGAGGAA 1662
Query 340 GCTTATGCGTTGCTaaaaaaaaTGAAAGAAGAT-GGACCTCTTCCAGATAGTGG-TACTT 397
|| |||| || | ||| |||||||||||||| ||| |||||||| | || || | | |
Sbjct 1663 GCAGATGCCTTATTTAAAGAAATGAAAGAAGATGGGA-CTCTTCCAAACAGCGGTTGC-T 1720
Query 398 ATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCA 457
|||||||||| |||||||| | |||||||||||||||| || ||||||| |||||||||
Sbjct 1721 ATAATACGCTGATTAGGGCACGCCTTAGAGATGGTGACAGAGAAGCATCAGCTGAACTCA 1780
Query 458 TCAGAGAAATGAGGAGTTGCGAGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTCACTA 517
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1781 TCAAAGAAATGAGGAGTTGCGGGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTCACTA 1840
Query 518 ATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAAATGCTTTCTT 568
||||||| |||||||||||||| ||||||||||| | || ||||||||||
Sbjct 1841 ATATGTTACATGATGGGAGATTGGACAAAAGCTTCCTCGATATGCTTTCTT 1891
Score = 287 bits (155), Expect = 9e-77
Identities = 195/215 (91%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 1 ATGGAACTCTTCCGCGAGATGTCACAGAGAGGATTGGTTGGCGATACAGTCACTTACACC 60
|||||| ||||||| |||||||| || ||||||||||||||| | || |||||||||| |
Sbjct 1246 ATGGAAGTCTTCCGTGAGATGTCTCAAAGAGGATTGGTTGGCAACACTGTCACTTACAAC 1305
Query 61 ACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAAA 120
| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1306 ATTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAAATATTCAAA 1365
Query 121 GAGATGGTTTCTGATGGTGTGCCTCCCAATCTCATGACATACAACTCTCTGTTAGATGGA 180
|||||||| |||||||| |||||||||||| | |||||||||||| || |||||||||||
Sbjct 1366 GAGATGGTATCTGATGGCGTGCCTCCCAATATTATGACATACAACACTTTGTTAGATGGA 1425
Query 181 CTCTGTAATAATGGGAAGCTAGAGAAAGCATTGGT 215
|| ||||| ||||||||||||||||||||| ||||
Sbjct 1426 CTTTGTAAAAATGGGAAGCTAGAGAAAGCAATGGT 1460
> AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23419396-23421579 FORWARD LENGTH=2049
Length=2049
Score = 311 bits (168), Expect = 5e-84
Identities = 296/355 (83%), Gaps = 19/355 (5%)
Strand=Plus/Plus
Query 219 TGGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCC 278
||| ||||||| ||| | ||||||| |||||||||||||||| | | | |||||
Sbjct 1551 TGGCAAGGTGGGAGAAGCGTGGGATTTATTTTGTAGCCTCAG-C-------A-TTAAGCC 1601
Query 279 TAATGTTGTAACATACAATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAA-ACCAGG 337
| ||||||||||||||||||||||||||||||| |||||||| ||| | || || |||
Sbjct 1602 TGATGTTGTAACATACAATACAATGATCTCAGGATTGTGTAGTAAACGCCTACTAC-AGG 1660
Query 338 AAGCTTATG-CGTTGCTaaaaaaaaTGAAAGAAGATGG-ACCTCTTCCAGATAGTGGTAC 395
|||| ||| | | | | | |||||||||||||||||| || ||||||| ||||||||||
Sbjct 1661 AAGCAGATGACCT-GTTCAGAAAAATGAAAGAAGATGGTAC-TCTTCCAAATAGTGGTAC 1718
Query 396 TTATAATACGCTTATTAGGGCGCATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACT 455
|||||||||||||| || || | ||||||||| |||||| ||| |||||| | |||||
Sbjct 1719 ATATAATACGCTTATCAGAGCAAACCTTAGAGATTGTGACAGAGCCGCATCAGCAGAACT 1778
Query 456 CATCAGAGAAATGAGGAGTTGC-GAGTTTGCTGGAGATGCTTCAACCATTGGCTTGGTCA 514
||||| |||||||||||||| | | ||||| ||||||||||||||||||| ||||||| |
Sbjct 1779 CATCAAAGAAATGAGGAGTT-CTGGGTTTGTTGGAGATGCTTCAACCATTAGCTTGGTGA 1837
Query 515 CTAATATGTTGCATGATGGGAGATTAGACAAAAGCTTTTTGGAA-ATGCTTTCTT 568
| ||||||||||||||||||||||| |||||||||||| | || ||||||||||
Sbjct 1838 CAAATATGTTGCATGATGGGAGATTGGACAAAAGCTTTCTC-AATATGCTTTCTT 1891
> AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23507320-23509053 FORWARD LENGTH=1734
Length=1734
Score = 209 bits (113), Expect = 2e-53
Identities = 155/176 (88%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 220 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCT 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1555 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAACCT 1614
Query 280 AATGTTGTAACATACAATACAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGAA 339
|||| ||| |||||||| ||||||||||| || ||||||||||||||||| | |||
Sbjct 1615 GATGTAATAATTTACAATACTATGATCTCAGGATTTTGTAGGAAAGGTTTAAAGGAAGAA 1674
Query 340 GCTTATGCGTTGCTaaaaaaaaTGAAAGAAGATGGACCTCTTCCAGATAGTGGTAC 395
|| |||| ||| | | |||||||| ||||||||| |||||||||||||| |||||
Sbjct 1675 GCAGATGCCTTGTTCAGAAAAATGAGAGAAGATGGGCCTCTTCCAGATAGCGGTAC 1730
> AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478486-16480584 REVERSE LENGTH=2099
Length=2099
Score = 130 bits (70), Expect = 2e-29
Identities = 112/132 (85%), Gaps = 4/132 (3%)
Strand=Plus/Plus
Query 245 TATTTTGTAGCCTCAGCCTT--AAAGGAGTGAAGCCTAATGTTGTAACATACAATACAAT 302
||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 1586 TATTTTGTAGCCT--TCCTTCAAAAGGAGTGAAGCCTAATGTTGTAACATATACTACAAT 1643
Query 303 GATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGAAGCTTATGCGTTGCTaaaaaaaaT 362
||| ||||| |||| |||| |||| ||||| || |||||| ||| |||| | | |||||
Sbjct 1644 GATATCAGGATTGTTTAGGGAAGGGTTAAAGCATGAAGCTCATGTGTTGTTTAGGAAAAT 1703
Query 363 GAAAGAAGATGG 374
||||||||||||
Sbjct 1704 GAAAGAAGATGG 1715
> AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23301576-23303162 FORWARD LENGTH=1587
Length=1587
Score = 95.3 bits (51), Expect = 6e-19
Identities = 54/55 (98%), Gaps = 1/55 (2%)
Strand=Plus/Plus
Query 220 GGGAAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGA 274
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 GGGAA-GTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGA 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5