BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475064
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62880.1 | Symbols: | Cornichon family protein | chr1:23291... 822 0.0
AT1G12340.1 | Symbols: | Cornichon family protein | chr1:41973... 311 6e-84
> AT1G62880.1 | Symbols: | Cornichon family protein | chr1:23291929-23293558
FORWARD LENGTH=861
Length=861
Score = 822 bits (445), Expect = 0.0
Identities = 499/526 (95%), Gaps = 0/526 (0%)
Strand=Plus/Plus
Query 106 GAGGGATGGGAGAGGTTTGGACATGGATTATTTCGTTTTTAATCCTTATCACTCTTGTTG 165
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||| | |
Sbjct 192 GAGGGATGGGAGAGGTCTGGACATGGATTATTTCATTCTTAATCCTTATCACTCTTCTCG 251
Query 166 GACTCATCGTCTATCAGCTCATTAGTTTGGCTGATCTCGAGTTTGATTATATCAACCCTT 225
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GACTCATCGTCTATCAGCTTATTAGTTTGGCTGATCTCGAGTTTGATTATATCAACCCTT 311
Query 226 ACGATTCTGCATCAAGAATAAACTTTGTGGTATTACCAGAATCCATTCTTCAAGGATTTT 285
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACGACTCTGCATCAAGAATAAACTTTGTGGTATTACCAGAATCCATTCTTCAAGGATTTT 371
Query 286 TATGCGTATTCTACCTCTTTACGGGTCATTGGTTCATGTCACTCCTTTGTGTTCCTTATC 345
|||||||||| |||||| | |||||||||||||||||| |||||||||| ||||||||||
Sbjct 372 TATGCGTATTTTACCTCGTAACGGGTCATTGGTTCATGGCACTCCTTTGCGTTCCTTATC 431
Query 346 TCTACTACAATTTCCATCTTTACTCGAGAAAACAACATTTGATAGACGTCACAGAGATCT 405
||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 432 TCTACTACAATTTCCATCTGTACTCTCGAAAACAACATTTGATAGACGTGACAGAGATCT 491
Query 406 TTAACTTACTTGATTGGGAAAAGAAGAAACGACTCTTCAAGCTCGCTTACATTATCCTCA 465
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TCAACTTGCTTGATTGGGAAAAGAAGAAACGACTCTTCAAGCTCGCTTACATTATCCTCA 551
Query 466 CTCTCTTTCTCACCATTTTCTGGTTAATCTATTCAACGCTGGATGATTACGAGGACTGAA 525
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 552 CTCTCTTTCTCACCATTTTCTGGTTAATCTATTCAACACTTGATGATTACGAGGACTGAA 611
Query 526 CCACGCTTGAAGATACATCCCTGTGACAGGCGACAACAAACGGTTTGATCAAACCTCTCT 585
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 612 TCACGCTTGAAGATACACCCCTGTGACAGGCGACAACAAACGGTTTGGTCAAACCCCTCT 671
Query 586 CTTACTACCTGACACTGCGCTTGATACAATGGCATGAGAAGGAAGG 631
|||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 672 CTTAGTACTTGACACCGCGCTTGATACAATGGCATGAGAAGGAAGG 717
Score = 110 bits (59), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 632 TGTGGCATTAGAGATTTGTGTAAGCCAGA-TTTATAGTCATTAGAATTTCATTGTGGATC 690
|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 743 TGTGGCATTAGAGAGCTGTGTAAACCAGATTTTATAGTCATTAGAATTTCATTGTGGATC 802
Query 691 TTTGTGGTGAAG 702
||||||||||||
Sbjct 803 TTTGTGGTGAAG 814
> AT1G12340.1 | Symbols: | Cornichon family protein | chr1:4197396-4198310
FORWARD LENGTH=668
Length=668
Score = 311 bits (168), Expect = 6e-84
Identities = 278/331 (84%), Gaps = 8/331 (2%)
Strand=Plus/Plus
Query 198 GATCTCGAGTTTGATTATATCAACCCTTACGATTCTGCATCAAGAATAAACTTTGTGGTA 257
|||||||||||||||||||||||||||||||| ||||| || |||||||||| |||||
Sbjct 64 GATCTCGAGTTTGATTATATCAACCCTTACGACTCTGCGTCGAGAATAAACTCAGTGGTT 123
Query 258 TTACCAGAATCCATTCTTCAAGGATTTTTATGCGTATTCTACCTCTTTACGGGTCATTGG 317
||||| || | |||| |||||||| || ||||||||||||||||| | || || || |||
Sbjct 124 TTACCGGAGTTCATTGTTCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGG 183
Query 318 TTCATGTCACTCCTT-TGTGTTCCTTATCTCTACTACAATTTCCATCTTTACTCGA-GAA 375
|||||| ||||| || ||| | || ||||||||||||||||||||||||||||||| |
Sbjct 184 TTCATGACACTC-TTATGTCTCCCCTATCTCTACTACAATTTCCATCTTTACTCGAAGCG 242
Query 376 AACAACATTT-GATAGACGTCACAGAGATCTTTAACTTACTTGATTGGGAAAAGAAGAAA 434
| ||||| || | |||| ||||| |||||||| || || || | ||||| |||||||||
Sbjct 243 A-CAACACTTAG-TAGATGTCACCGAGATCTTCAATTTGCTAAACTGGGAGAAGAAGAAA 300
Query 435 CGACTCTTCAAGCTCGCTTACATTATCCTCA-CTCTCTTTCTCACCATTTTCTGGTTAAT 493
|| || |||||||| ||||||||| |||| | | ||||||||||| || |||||| | ||
Sbjct 301 CGGCTGTTCAAGCTTGCTTACATTGTCCTTAAC-CTCTTTCTCACTATCTTCTGGATGAT 359
Query 494 CTATTCAACGCTGGATGATTACGAGGACTGA 524
||||| |||||||||||||||||||||||
Sbjct 360 TTATTCGGCGCTGGATGATTACGAGGACTGA 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5