BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475068
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62850.2 | Symbols: | Class I peptide chain release factor ... 1142 0.0
AT1G62840.1 | Symbols: | Protein of unknown function (DUF1442)... 854 0.0
> AT1G62850.2 | Symbols: | Class I peptide chain release factor
| chr1:23271703-23274265 REVERSE LENGTH=1670
Length=1670
Score = 1142 bits (618), Expect = 0.0
Identities = 700/741 (94%), Gaps = 0/741 (0%)
Strand=Plus/Plus
Query 21 CAAAATGGCGGCAATCAGAACGATGACGAACATGATTCTACGCGAGTTTATCCATCATCC 80
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 51 CAAAATGGCGGCAATCAGAACGATGACGAACATGATTCTACGCGAGTTCATCCATCATCC 110
Query 81 ACTTCTCCTTCACTCTTCATCGAAATCGTGTCAATCTCTTTTGCCATGTCTCCGTCTCAC 140
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 111 ACTTCTCCTTCACTCTTCATCGAAATCGTGTCAATCTCTTTTACCATGTCTCCGTCTCAC 170
Query 141 TCCCCTAATTGCTCCAATTCACTCTAATTCCCGATTTGGATCCATCCGATGTGTGGCGTC 200
|||||||||| |||||||||||||||||||||| | | |||| ||||||||| ||| ||
Sbjct 171 TCCCCTAATTTCTCCAATTCACTCTAATTCCCGGCTCGTATCCGTCCGATGTGCGGCATC 230
Query 201 TACCTCCGGTGGAAGCAATGGTGATCGTAAAGTCTCTTCACGGTTGTCGCAGGTTCAACA 260
||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 231 GACCTCCGGTGGAAGCGGTGGTGATCGGAAAGTCTCTTCACGGTTGTCGCAGGTGCAACA 290
Query 261 GATGCTTCATGAAGCTGAAGAGAGAGCTAATTCCGCTGGCAATGAACCTACTCCTCAAAT 320
||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 291 GATGCTTCATGAAGCCGAAGAGAGAGCTAGTTCCGCTGGCAATGAGCCTACTCCTCAAAT 350
Query 321 CACTCTTGACCATGTTACACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGT 380
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CACTCTAGACAATGTTACACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGT 410
Query 381 GAACAAATTGAATACCAAAGTAGATATGCGCTTCAATGTGAAGAACGCCTACTGGCTAAG 440
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 411 GAACAAATTGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGGCTGAG 470
Query 441 TGACAGGATCAGAGAGAAAATCATACTGAAGGAGAAGAATCGGATCAACAAGGACGGTGA 500
|||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct 471 TGACAGGATCAGAGAGAAAATCTTACTGACGGAGAAGAATCGGATCAACAAGGATGGTGA 530
Query 501 ACTTGTGATATCTTCAACCAAAACCAGAACGCAGAAAGGCAACATTGACGATGCACTTGA 560
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 531 ACTTGTGATATCTTCTACCAAAACCAGAACGCAGAAAGGTAACATCGACGATGCACTTGA 590
Query 561 AAAACTACAGGCGATAATTAATGCGGCTTCGTATGTTCCACCTCCACCATCAGAAGAACA 620
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 591 AAAACTACAGGCGATAATTGATGCGGCTTCATATGTTCCACCTCCACCATCAGAAGAACA 650
Query 621 GAAGAAGAAAATTGTAAAGATGGCTGAGAAAGCTGACAATAAACGACTTAAAAGCAAAAA 680
||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 651 AAAGAAGAAAATAGTAAAGCTCGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAA 710
Query 681 AGTTCTTTCAGACAAGAAATCTTCGAGAAGAAGCCGTGGTAGTTACGATGATTAAACTTA 740
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 711 AGTTCTGTCAGACAAGAAATCTGCGAGAAGAAGCCGCGGTAGTTACGATGATTAAACTTA 770
Query 741 AAACCATACAATGCAGTCCAG 761
||||||||||||| |||||||
Sbjct 771 AAACCATACAATGGAGTCCAG 791
Score = 883 bits (478), Expect = 0.0
Identities = 524/547 (96%), Gaps = 0/547 (0%)
Strand=Plus/Plus
Query 758 CCAGAGCTTCTTGCTGCAGCAACATGAGCGATTTCTAGACCACCGGAAACTGGAAGAGTC 817
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1051 CCAGAGCTTCTTGCTGCGGCAACATGAGCGATTTCTAGACCACCAGAAACTGGAAGAGTC 1110
Query 818 ACTGTTCTTACAACATTCCGGTCACTAAATGCTTTTGTCCAACTGAAACATGAAGTGCTT 877
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1111 ACTGTTCTCACAACATTCCGGTCACTAAATGCTTTTGTCCAACTGAAACACGAAGTGCTT 1170
Query 878 CTTCGGTAACCGCTTCTGCATACCACAACCGCACCTCTGCTTCCAAACACAGCGTTTCTC 937
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 1171 CTTCGGTAACCGCTTCTGCAGACCACAACAGCTCCTCTGCTACCAAACACAGCGTTTCTC 1230
Query 938 AAAACGTTTGCTGCGAAATCCTTCTGATCCCAGTCAACTACCAAGAAATCGATTCCTTGT 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AAAACGTTTGCTGCGAAATCCTTCTGATCCCAGTCAACTACCAAGAAATCGATTCCTTGT 1290
Query 998 AGCGTCAGCATCGTGTGCTCCAATTCTTCTTCTTCCTCATTCATAATAATCGTCTCCGGC 1057
|||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 1291 AGCGTCTGCATCGTGTGCTCCAATTCCTCTCCTTCCTCGTTCATAATAATCGTCTCCGGC 1350
Query 1058 AAGTTTGAGCAAGATTGTTCTGCCATGGCTTGAAGATAAGCAGTTTGTGATCTTGCGTTT 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 AAGTTTGAGCAAGATTGTTCTGCCATGGCTTGAAGATAAGCAGTTTGTGATCTTGCGTTT 1410
Query 1118 GGTACAATACAAATGTGTCTTCCGTTTGTGTGTCGACTCGCTATGGTTAAGCCTATGCTT 1177
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 1411 GGTACTATACAAATGTGTCTTCCGTTTGTGTGTCGACTCGCTATGTTTAAGCCAACGCTT 1470
Query 1178 ATGGCTATGGTTTCTCCTTCTGACCATGTTTCCACGATTAAATTCGCGTTCCATCCTGCC 1237
|||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1471 ATGGCTATAGTTTCTCCTTCTGACCATGTTTCCACAATCAAATTGGCGTTCCATCCTGCT 1530
Query 1238 GCCATCGCCGCCACTAGCTCTGCCGCTCCCGGCGTTCCAAGATTTTCATACTGCAAAAGT 1297
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1531 GCCATCGCCGCCACTAGCTCCGCCGCTCCCGGCGTTCCAAGATTTTCACACTGCAAAAGT 1590
Query 1298 TGCCCAA 1304
|||||||
Sbjct 1591 TGCCCAA 1597
> AT1G62840.1 | Symbols: | Protein of unknown function (DUF1442)
| chr1:23271416-23272578 FORWARD LENGTH=911
Length=911
Score = 854 bits (462), Expect = 0.0
Identities = 506/528 (96%), Gaps = 0/528 (0%)
Strand=Plus/Minus
Query 758 CCAGAGCTTCTTGCTGCAGCAACATGAGCGATTTCTAGACCACCGGAAACTGGAAGAGTC 817
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 655 CCAGAGCTTCTTGCTGCGGCAACATGAGCGATTTCTAGACCACCAGAAACTGGAAGAGTC 596
Query 818 ACTGTTCTTACAACATTCCGGTCACTAAATGCTTTTGTCCAACTGAAACATGAAGTGCTT 877
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 595 ACTGTTCTCACAACATTCCGGTCACTAAATGCTTTTGTCCAACTGAAACACGAAGTGCTT 536
Query 878 CTTCGGTAACCGCTTCTGCATACCACAACCGCACCTCTGCTTCCAAACACAGCGTTTCTC 937
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 535 CTTCGGTAACCGCTTCTGCAGACCACAACAGCTCCTCTGCTACCAAACACAGCGTTTCTC 476
Query 938 AAAACGTTTGCTGCGAAATCCTTCTGATCCCAGTCAACTACCAAGAAATCGATTCCTTGT 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AAAACGTTTGCTGCGAAATCCTTCTGATCCCAGTCAACTACCAAGAAATCGATTCCTTGT 416
Query 998 AGCGTCAGCATCGTGTGCTCCAATTCTTCTTCTTCCTCATTCATAATAATCGTCTCCGGC 1057
|||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 415 AGCGTCTGCATCGTGTGCTCCAATTCCTCTCCTTCCTCGTTCATAATAATCGTCTCCGGC 356
Query 1058 AAGTTTGAGCAAGATTGTTCTGCCATGGCTTGAAGATAAGCAGTTTGTGATCTTGCGTTT 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AAGTTTGAGCAAGATTGTTCTGCCATGGCTTGAAGATAAGCAGTTTGTGATCTTGCGTTT 296
Query 1118 GGTACAATACAAATGTGTCTTCCGTTTGTGTGTCGACTCGCTATGGTTAAGCCTATGCTT 1177
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 295 GGTACTATACAAATGTGTCTTCCGTTTGTGTGTCGACTCGCTATGTTTAAGCCAACGCTT 236
Query 1178 ATGGCTATGGTTTCTCCTTCTGACCATGTTTCCACGATTAAATTCGCGTTCCATCCTGCC 1237
|||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 235 ATGGCTATAGTTTCTCCTTCTGACCATGTTTCCACAATCAAATTGGCGTTCCATCCTGCT 176
Query 1238 GCCATCGCCGCCACTAGCTCTGCCGCTCCCGGCGTTCCAAGATTTTCA 1285
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 175 GCCATCGCCGCCACTAGCTCCGCCGCTCCCGGCGTTCCAAGATTTTCA 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5