BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475071
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62800.2 | Symbols: ASP4 | aspartate aminotransferase 4 | ch... 2158 0.0
AT5G19550.1 | Symbols: ASP2, AAT2 | aspartate aminotransferase ... 1116 0.0
> AT1G62800.2 | Symbols: ASP4 | aspartate aminotransferase 4 |
chr1:23253703-23257463 REVERSE LENGTH=1496
Length=1496
Score = 2158 bits (1168), Expect = 0.0
Identities = 1285/1341 (96%), Gaps = 9/1341 (1%)
Strand=Plus/Plus
Query 1 TTTCAACTGATTCAATCAATTCTCATGAATTCCATCTTGTCAAGCGTCCTTCCTGCTCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 TTTCAACTGATTCAATCAATTCTCATGAATTCCATCTTGTCAAGCGTCCTTCCTGCTCCC 83
Query 61 AAAGATCCTGTTCTCAGTGTAATTTTTGCTTGTAGAGATGATCCTAGTCCGGTCAAGTTG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 84 GAAGATCCTGTTCTCAGTGTAATTTTTGCTTGTAGAGATGATCCTAGTCCGGTTAAGTTG 143
Query 121 AATTTGAGCGCAGGTACCTATCGAACTGAGGAAGGAAAGCCTCTTGTTCTTGATGTTGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AATTTGAGCGCAGGTACCTATCGAACTGAGGAAGGAAAGCCTCTTGTTCTTGATGTTGTG 203
Query 181 AGAAGAGCAGAGCAACAGTTAGCCAACGACCTGTCTAGGGACAAGGAATATCTTCCCCTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AGAAGAGCAGAGCAACAGTTAGCCAACGACCTGTCTAGGGACAAGGAATATCTTCCCCTC 263
Query 241 AATGGACTTCCTGAATTCAATAAATTAAGTACCAAGCTTATCTTAGGTGATGATAGTCCC 300
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 264 AATGGACTTCCTGAATTTAATAAATTAAGTACCAAGCTCATCTTAGGTGATGATAGTCCT 323
Query 301 GCAGTGAAAGAGAATAGAGTTGTTACAATCCAGTGTTTGTCTGGTACTGGTTCTTTGAGA 360
||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 324 GCATTGAAAGAGAATAGAGTTGTTACAACCCAATGTTTGTCTGGTACTGGTTCTTTGAGA 383
Query 361 GTTGGAGCTGAGTTTCTAGCAACACACAACAAAGAACGTGTCATTTTCGTTCCAGACCCA 420
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 384 GTTGGAGCTGAGTTTCTAGCAACACACAACAAAGAAAGTGTCATTTTCGTTCCAAACCCA 443
Query 421 ACTTGGGGGAACCATCCCCGTATTTTTGCTTTGGCGGGTTTGTCTGTCGAGTATTTCCGC 480
|| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 444 ACGTGGGGGAACCATCCCCGTATTTTTACTTTGGCGGGTTTGTCTGTCCAGTATTTCCGT 503
Query 481 TACTATGATCCGAAGAGCCGAGGACTTGACTTCAAAGGCATGCTCGAGGATCTTGGCGCT 540
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 504 TATTATGATCCGAAGAGCCGAGGACTCGACTTCAAAGGCATGCTCGAGGATCTTGGCGCT 563
Query 541 GCACCTCCTGGAGCTATAGTGGTACTTCAAGCTTGTGGGCATAACCCCACTGGAGTTGAC 600
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 564 GCACCTCCTGGAGCTATAGTGGTACTTCAAGCTTGTGCGCATAACCCCACAGGAGTTGAC 623
Query 601 CCAACATTCGAACAATGGGAACAGATTCGACGACTAGTGAGATCGAAAGGCTTATTACCC 660
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 624 CCAACATTCGAACAATGGGAAAAGATTCGACGACTAGTGAGATCGAAAAGCTTATTACCT 683
Query 661 TTCTTTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACTCAGATGCACAAGCG 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 684 TTCTTTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACGCAGATGCACAAGCG 743
Query 721 GTTCGTATGTTTGTTGCCGATGGAGGTGAATGTTTGATAGCTCAAAGTTATGCCAAAAAT 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GTTCGTATGTTTGTAGCCGATGGAGGTGAATGTTTGATAGCTCAAAGTTATGCCAAAAAT 803
Query 781 ATGGGTCTCTATGGGGAGCGTATTGGCGCTCTTACCATTGTATGCACATCAGAAGATGTC 840
||||| || |||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 804 ATGGGCCTTTATGGGGAGCGTATTGGCTCTCTTACGATCGTATGCACATCAGAAGATGTC 863
Query 841 GCTAAGAAAGTTGAGGACCAAGTGCTACTTGTTGTGAGGCCTATGTATCTTACCCCACCT 900
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 864 GCTAAGAAAGTTGAGAACCAAGTGCTACTTGTTGTGAGGCCTATGTATCTTACACCACCT 923
Query 901 ATTCATGGTGCATCAATTGTTGCCACAATTCTAAAAAACAGTGATATGTACAATGACTGG 960
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 ATTCATGGTGCATCTATTGTTGCCACAATTCTAAAAAACAGTGATATGTACAATGACTGG 983
Query 961 ACAATTGAGCTGAAAGGAATGGCTGACCGCATAATTAGCATGCGTCAACAGTTATATGAA 1020
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 984 ACCATTGAGCTGAAAGGAATGGCTGACCGCATAATTAGCATGCGTCAACAGTTATATGCA 1043
Query 1021 GCTATACAAGCTAGAGGAACACCTGGTGATTGGAGTCACATTATTAAACATATTGGGATG 1080
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GCTCTAGAAGCTAGAGGAACACCTGGTGATTGGAGTCACATTATTAAACATATTGGGATG 1103
Query 1081 TTTACTTTTACTGGATTAAGTGAGGAACAAGTTCACTTGATTGCCAAAGAATATCACATT 1140
||||||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 1104 TTTACTTTTACCGGATTGAGTGAGGAGCAAGTTCGCTTGATGGCCAAAGAATATCACATT 1163
Query 1141 TACATGACTTATGATGGGAGGATAAGCATGGCAAGTCTAAGTTCGAAGACAGTGCCTCAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TACATGACTTATGATGGGAGGATAAGCATGGCAAGTCTAAGTTCGAAGACAGTGCCTCAA 1223
Query 1201 CTCGCTGATGCTATACATGCTGTTGTTACTCGCATCGCCTAA--A--TTTGCGATTATGT 1256
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 1224 CTCGCTGATGCTATACATGCTGTTGTTACTCGCATCGCCTAATTAAATTTGCGATTCTGT 1283
Query 1257 TCTTT-GTTGTTT--T--ATGAACACAATTGGGGAATAAAACTGCGTTCTTGGTTTACAT 1311
||||| ||||||| | |||||||||||| | |||||||||||||||||||||||||||
Sbjct 1284 TCTTTTGTTGTTTAATTTATGAACACAATTAGAGAATAAAACTGCGTTCTTGGTTTACAT 1343
Query 1312 TTCATAAGAGAGCACATAGAA 1332
|| |||||| |||||| ||||
Sbjct 1344 TTAATAAGATAGCACAAAGAA 1364
> AT5G19550.1 | Symbols: ASP2, AAT2 | aspartate aminotransferase
2 | chr5:6598017-6601819 FORWARD LENGTH=1624
Length=1624
Score = 1116 bits (604), Expect = 0.0
Identities = 1047/1255 (83%), Gaps = 54/1255 (4%)
Strand=Plus/Plus
Query 23 TCATGAATTCCATCTTGTC-AAGCG-TCCTTCCTGCTCCCAAAGATCCTGTTCTCAGTGT 80
||||| ||||| |||| || || || | | || ||||||| |||||||| ||||| ||||
Sbjct 183 TCATGGATTCCGTCTTCTCTAA-CGTTGC-TCGTGCTCCCGAAGATCCTATTCTCGGTGT 240
Query 81 AATTTTTGCTT-GTAGAGATGATCCTAGTCCGGTCAAGTTGAATTTGAGCG-CAGGTACC 138
|| | |||||| | | ||||||||||||| || ||| | |||||| | | | ||| ||
Sbjct 241 AACTGTTGCTTACAACA-ATGATCCTAGTCCTGTTAAGATCAATTTGGGTGTC-GGTGCC 298
Query 139 TATCGAACTGAGGAAGGAAAGCCTCTTGTTCTTGATGTTGTGAG-AAGAGCAGAGCAACA 197
|| |||||||||||||| |||||||||||||||||||| ||| | ||| |||||||||||
Sbjct 299 TACCGAACTGAGGAAGGGAAGCCTCTTGTTCTTGATGTGGTGCGTAAG-GCAGAGCAACA 357
Query 198 GTTAGCCAACGA-CCTGTCTAGGGACAAGGAATATC-TTCCCCTTAATGG-ACTTCCTGA 254
| ||| ||||| || |||| ||| ||||||||| | ||||| || ||| | |||| ||
Sbjct 358 GCTAGTGAACGATCC-GTCTCGGGTCAAGGAATA-CATTCCCATTGTTGGTATTTCC-GA 414
Query 255 ATTCAATAAATTAAGTACCAAGCTTATCTTAGGTGATGATAGTCCCGCAG-TGAAAGAGA 313
|| || || ||||| ||||||| |||||||||| ||| ||||| || | | | ||| |
Sbjct 415 TTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGC-GATTACAGA-A 472
Query 314 A-TAGAGTTGTTACAATCCAGTGTTTGTCTGGTACTGGTTCTTTGAGAGTTGGAGCTGAG 372
| ||||||| |||| ||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 473 AGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTACTGGTTCGTTGAGAGTTGGGGCTGAG 532
Query 373 TTTCT-AGCAACACACAACAAAGAACGTGTCATTTTCGTTCCAGACCCAACTTGGGGGAA 431
||||| | ||||||| || | || ||||||||| | ||||| | ||||||||||||||
Sbjct 533 TTTCTCA-AAACACACTACCACCAAAGTGTCATTTACATTCCAAAACCAACTTGGGGGAA 591
Query 432 CCATCCCCGTA-TTTT-TGCTTTGGCGGGTTTGTCTGTCGAGTATTTCCGCTACTATGAT 489
|||| ||| | |||| | ||||| || |||||||| |||||||||||||||||||||
Sbjct 592 CCAT-CCCAAAGTTTTCAAC-TTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGAT 649
Query 490 CC-GAAGAGCCGAGGACTTGACTTCAAAGGCATGCTCGAGGATCTTGGCGCTGCACC-TC 547
|| | | | ||| || ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 650 CCTGCA-ACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCAT- 707
Query 548 CTGGAGCTATAGTGGTACTTCAAGCTTGTGGGCATAACCCCACTGGAGTTGACCCAACAT 607
|||||||||| || ||||||| || |||| || || ||||||||||||||||||||
Sbjct 708 CTGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAAC-C 766
Query 608 TC-GAACAATGGGAACAGATTCGACGA-CTAG-TGAGATCGAAAGGCTTATTACCCTTCT 664
|| ||||| |||||||||||||||| | || | ||||||| ||| ||||||||||||| |
Sbjct 767 TCTGAACAGTGGGAACAGATTCGAC-AGCT-GATGAGATCTAAAAGCTTATTACCCTTTT 824
Query 665 TTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACTCAGATGCACAAGCGGTTC 724
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |
Sbjct 825 TTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACACAGATGCACAATCTGTCC 884
Query 725 GTATGTTTGTTGCCGATGGAGGTGAATGTTTGATAGCTCAAAGTTATGCCAAAAATATGG 784
||| |||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 885 GTACATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATGG 944
Query 785 GTCTCTATGGGGAGCGTATTGGCGCTCTTACCATTGTATGCACA-TCAGAAGATGTCGCT 843
| || |||||||||||| |||| || |||| |||||| |||| | |||| |||||| |||
Sbjct 945 GACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTGTCTGCA-AGTCAGCAGATGTGGCT 1003
Query 844 AAGAAAG-TTGAG-GACCAAGTGCTA-CTTGTTGTGAGGCCTATGTAT-CTTA-CCCCAC 898
| | ||| ||||| | ||| ||| | ||||||||| |||| |||||| | | |||| |
Sbjct 1004 A-GTAAGGTTGAGAG-CCAGGTGA-AGCTTGTTGTGCGGCCCATGTATTCG-AGCCCC-C 1058
Query 899 CTATTCATGGTGCATCAATTGTTGCCACAATTCTAAAAAACAGTGATATGTACAATGACT 958
|||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 1059 CTATTCATGGAGCATCAATTGTTGCCACCATTCTAAAAAGCAGTGATATGTACAACAACT 1118
Query 959 GGACAATTGAGCTGAAAGGAATGGCTGACCGCATAATTAGCATGCGTCAACAGTTATATG 1018
|||| || |||||||||| |||||||||||| |||| |||||||| |||||||||| ||
Sbjct 1119 GGACCATCGAGCTGAAAGAAATGGCTGACCGTATAAAGAGCATGCGCCAACAGTTATTTG 1178
Query 1019 AAGCTATACAAGCTAGAGGAACACCTGGTGATTGGAGTCACATTATTAAACATATTGGGA 1078
||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||
Sbjct 1179 AAGCTATACAAGCTAGAGGTACACCTGGTGACTGGAGTCATATTATCAAACAGATTGGGA 1238
Query 1079 TGTTTACTTTTACTGGATT-AAGTGAGGAACAAGTTCACTTGATTG-CCAAAGAATATC- 1135
||||||| ||||||||||| || |||| |||||| | || || | ||||||| | ||
Sbjct 1239 TGTTTACATTTACTGGATTGAACA-AGGAGCAAGTTGAATTCAT-GACCAAAGAGT-TCC 1295
Query 1136 ACATTTACATGACTTATGATGGGAGGATAAGCATGGCAAGTCTAAGTTCGAAGACAGTGC 1195
||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1296 ACATTTACATGACCTCTGATGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGC 1355
Query 1196 CTCAACTCGCTGATGCTATACATGCTGTTGTTACTCGCATCGCCTAAATTTGCGA 1250
|||| || || |||||||| ||||||| || || ||| ||| ||||| | ||||
Sbjct 1356 CTCACCTTGCCGATGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5