BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475074
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62790.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 734 0.0
> AT1G62790.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:23252313-23253743
FORWARD LENGTH=771
Length=771
Score = 734 bits (397), Expect = 0.0
Identities = 528/586 (90%), Gaps = 29/586 (5%)
Strand=Plus/Plus
Query 4 aaaag-aaaaaagc--ttagagaggtaaagaaaaaaagaaagaTGAAGACGATGATGATG 60
||||| |||||||| ||||||| |||| |||||| || || |||||||||||||||
Sbjct 20 AAAAGAAAAAAAGCAAAGAGAGAGGAAAAG-AAAAAA-AATGACGAAGACGATGATGATC 77
Query 61 TTCGCGGCGGCGATGACGGTGATGGCTTTGGTTTCGGTTCCGGCGGTTGAAGCACAGACA 120
|| ||||||||||||||||||||||||||| ||| ||||||| | |||||||||| ||
Sbjct 78 TTTGCGGCGGCGATGACGGTGATGGCTTTGCTTTTGGTTCCGACTATTGAAGCACAAACT 137
Query 121 GAGTGCGTGAGCAAACTAGTCCCTTGCTTCAACGACCTGAACACGACAACAACGCCGGTT 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GAGTGCGTGAGCAAGCTAGTCCCTTGCTTCAACGACCTGAACACGACAACAACGCCGGTG 197
Query 181 AAAGAATGTTGCGACTCGATAAAAGAAGCGGTGGAGAAGGAACTTACATGTCTATGTACA 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 198 AAAGAATGTTGCGACTCGATTAAAGAAGCGGTGGAGAAGGAACTTACATGTCTCTGTACA 257
Query 241 ATCTACACCACTCCTGGTTTGCTCTCTCAGTTCAACGTCACCACTGATAAAGCTCTCGGT 300
|||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 258 ATCTACACCAGTCCAGGTTTGCTCGCTCAGTTCAACGTCACCACTGAGAAAGCTCTCGGT 317
Query 301 CTTAGCCGTCGATGCAACGTCACCACTGATCTCTCTGCTTGTACCGCTAAAGGAGCTCCA 360
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 318 CTTAGCCGTCGTTGCAACGTCACCACTGATCTCTCCGCTTGTACCGCTAAAGGAGCTCCA 377
Query 361 TCGCCAAAAGCTTCTTTACCTCCTCCAGC-C--G--GG-AATACCAAAAAAGACGCCGGA 414
||||||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 378 TCGCCAAAAGCTTCTTTACCTCCTCCAGCTCCAGCAGGGAATACCAAAAAAGACGCCGGA 437
Query 415 GCTGGGAACAAGCTCGCCGGTTATGGAGCCACCACCTTGATCTTGTCTTTGATCTCATCC 474
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 438 GCTGGGAACAAGCTCGCCGGTTATGGAGTCACCACCGTGATCTTGTCTTTGATCTCATCC 497
Query 475 ATCTTCTTCTGAAATCCTTAACCGGATTTATACGGTTTTATTATTATTAGCTCAATAATT 534
||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 498 ATCTTCTTCTGAATTCCTTTACC---------CGGTTTTATTATTATTAGCTCAATAA-- 546
Query 535 CACGAGATTTTCGAGATTTGTTTGCTTT-GGCTTAACTTATTTAAT 579
| || |||||||||||||||||| |||||||||||||||||
Sbjct 547 -A-----TTCTCGAGATTTGTTTGCTTTTGGCTTAACTTATTTAAT 586
Score = 113 bits (61), Expect = 2e-24
Identities = 72/77 (94%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 580 TGTTATGTTTTATCATTGATTCATCATTGAGTCCCATGTTAGTATATTTACCGGTT-TAA 638
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 622 TGTTATGTATTATCATTGATTCATTATTGAGTCCCATGTTAGTATATTTACCGGTTATAA 681
Query 639 ACCGGACTCTATCATTT 655
| ||||||||||||||
Sbjct 682 TC-GGACTCTATCATTT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5