BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475075
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1387 0.0
> AT1G62780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 94 Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:23249145-23251105
REVERSE LENGTH=957
Length=957
Score = 1387 bits (751), Expect = 0.0
Identities = 858/909 (94%), Gaps = 10/909 (1%)
Strand=Plus/Plus
Query 1 AAAAAAGCAGAGCTCACACTTAG-aaa-aaaaaaTTCTAATGGCTACGCTTTCGTTCGGA 58
||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||
Sbjct 1 AAAAAAGCAGAGCTCACACTTAGAAAACAAAAAACAAAAATGGCTACGCTTTCGTTTGGA 60
Query 59 ATCGCCG-C-C-GCAACCACCGTCCGTACAATACCGAAATTTAATACACGGAGGAGCAAA 115
||||||| | | ||||||||||||||||| || |||| ||||||| ||||||||||||||
Sbjct 61 ATCGCCGCCGCTGCAACCACCGTCCGTACGATTCCGAGATTTAATTCACGGAGGAGCAAA 120
Query 116 ATCTCCTGCGAATGGGATCCGAAAGGTGTGTTAGGTCCGCCGCAAACTGGTCATATCGCT 175
||| | |||||||||||||||||||||||||| |||||| | |||||||||||||| |||
Sbjct 121 ATCACATGCGAATGGGATCCGAAAGGTGTGTTGGGTCCGGCTCAAACTGGTCATATAGCT 180
Query 176 AGGCTTGAGTTTAAACGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAA 235
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGCTTGAGTTTAAGCGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAA 240
Query 236 CAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGAT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGAT 300
Query 296 ACTGCGGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTACGAG 355
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ACTGCTGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTATGAG 360
Query 356 ATCGCTAGGCTTCGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATC 415
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCGCTAGGCTTAGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATC 420
Query 416 GGGCAGATTCGGTTTGCTGTTACTAAGACTGCGGAAAGTGAAGATAGATTGATTGAGCTT 475
|| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 421 GGACAGATTCGATTTGCTGTTACTAAGACTGCGGATATTGAAGATAGATTGATTGAGCTT 480
Query 476 GAAACACTTCAAAAAGCTTTAGAAGAGGGAATAGAGGCTTATGACAAAATGCAAAATGAG 535
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GAAACACTTCAAAAAGCTTTAGAAGAAGGAATAGAGGCTTATGACAAAATGCAAAATGAG 540
Query 536 CTTATGACGGCTACAAATAGCTTAACCAAGA-TCTTAACCTCAACCGATATAAAAACCAC 594
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 541 CTTATGACGGCTACAAATAGCTTAACCAA-ACTCTTAACCTCAACCGATATAAAAACCAC 599
Query 595 ATTATTGGATATGGTGGAGAAAAACGAAATCAACCGATCTTTGTTGGCACTTCTCGACGA 654
||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 600 ATTGTTGGATATGGTGGAGAAAAACCAAATCAACAGATCTTTGTTGGCACTTCTCGACGA 659
Query 655 AAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGAT 719
Query 715 ACGTTCTTCGGTTCTAAAGTACTTGACAGTGTAGGATCATACGAGTCTTCGAAAGATTTC 774
||| ||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 720 ACGCTCTTCAGTTCTTAAGTATTTGACAGTGTAGGATCATATGAGTCTTCGAAAGATTTC 779
Query 775 TCAAGCTTTTGAATGTTTTCTATTATCGGGTAAAAATGTATTTATATTTTTGTTTTGTTG 834
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 780 TCAAGCTTTTGAATGTTTTCTATTATCGGGGAAAATTGTATTTATATTTTTGTTT-GTTG 838
Query 835 AGTAAAATGTATTT-CTTTCTT-CCGAACGATGATTATATCTTTAAGGTCGTTTCAGATC 892
|||||||||||||| |||| || |||||||||| |||||| |||| |||| |||||||||
Sbjct 839 AGTAAAATGTATTTTCTTTTTTTCCGAACGATGTTTATATTTTTAGGGTCATTTCAGATC 898
Query 893 TCCAAGTAA 901
| |||||||
Sbjct 899 TTCAAGTAA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5