BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475076
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62770.1 | Symbols: | Plant invertase/pectin methylesterase... 1195 0.0
> AT1G62770.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:23245886-23246890 REVERSE
LENGTH=868
Length=868
Score = 1195 bits (647), Expect = 0.0
Identities = 745/792 (94%), Gaps = 7/792 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCTTAATAAAAATACAATCTTTCTAGTCCTACTTCTATCAATAACCATTCTCCAA 60
||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 55 ATGGAGC-T--TAAAAATACAATCTTTCTAGTCATACTTCTATCAATAACCATTCTCCAA 111
Query 61 TCTTCATCTGCAACCCCAAACCGGTCGGAACCAGACCGGTTCATTGTGTCTTCATGCCAA 120
|||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct 112 TCTTCATCTGCAACCCCAAACCGGTCGGAATCAGACCAGTTTATTGTGTCTTCATGCCAA 171
Query 121 ACCACCCAATATCCATTAGTTTGCGTGCATACACTCTCTGCTTACGCCACCAAGATCCGC 180
|||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct 172 ACCACCCAATATCCATCACTATGCGTGCACACACTCTCTGCTTACGCCACCAAGATCCGC 231
Query 181 CACAACAACGACCAAGATCTCGCCCAAACCGCTCTCACCATCAGCTTGGCTCGAGCCAAA 240
|||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 232 CACAACAATGACCAAGATCTCGCCCAGACTGCTCTCATCATCAGCTTGGCTCGAGCCAAA 291
Query 241 TCCGTTTCTATCTTCGTCGCCAAACTAACCAAAGTGACACCAGGATTAAAACGTAGAGAA 300
|||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||| |||
Sbjct 292 TCCGTTACTATCTTCGTCGCCAAACTAACCAAAGAGACACCAAAATTTAAACGTAGGGAA 351
Query 301 TATCTAGCAATTAAAGATTGCATCGAAGTGCTAGGCAATAGCGTGGACCGGTTAGCTCAA 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TATCTAGCAATCAAAGATTGCATCGAAGTGCTAGGCAATAGCGTGGACCGGTTAGCTCAA 411
Query 361 TCGGTTAAAGAACTGGGTCGAGCTGGTCATGCTGTGGCTAGTGAGGACTTCATGTGGAAG 420
|||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TCGGTTAAGGAACTTGCTCGAGCTGGTCATGCTGTGGCTAGTGAGGACTTCATGTGGAAA 471
Query 421 ATGAGTAACGTTCAAACATGGGTCAGTGCCGCTTTAACCGATGAGACAACGTGTCTAGAT 480
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 472 ATGAGTAACGTTCAAACATGGGTCAGTGCCGCTTTGACGGACGAGACAACGTGTCTAGAT 531
Query 481 GGATTCTCGGAACGAGCCATGGGAGGCAAAGTGAAGAGGCTGATTCGGTTTAGGGTGGTT 540
|||||||| ||||||||||||||||||||||| || || |||||||||| || |||||||
Sbjct 532 GGATTCTCAGAACGAGCCATGGGAGGCAAAGTCAAAAGACTGATTCGGTATAAGGTGGTT 591
Query 541 CACGTGGCTCAAGTCACTAGCAATGCTCTTGCTTTGGTTAATCAGTTTGCAGAGAAACGA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 592 CACGTGGCTCAAGTCACTAGCAATGCTCTTGCTTTGGTTAATCAGTTTGCAGAGAAGCGA 651
Query 601 AGTGTGACGTTTCCTTAAATGGACTTAAATGTGAAAATTTTGGCTTGTATGTGAAAGTTT 660
||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 652 AGTGTGAAGTTTCCTTAAATGGACTTAAATGTGAAAATTTTGGCTTGTAAGTGAGAGTTT 711
Query 661 GAATCTAAACTTCAAA-A-TTGTGTAAATTGTTATCCttttttttt-GTCGGTTGGAAAG 717
||||||||||||||| | ||||||||||||||||| ||||||||| |||||| ||||||
Sbjct 712 GAATCTAAACTTCAATTAGTTGTGTAAATTGTTATC-TTTTTTTTTCGTCGGTCGGAAAG 770
Query 718 AAAACTCAAGATTGTGTAACAATCTTTGTTGTGTCCTGTATAATATTGTATTTTAAGATA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TAAACTCAAGATTGTGTAACAATCTTTGTTGTGTCCTGTATAATATTGTATTTTAAGATA 830
Query 778 AAGATATATAGT 789
| ||||||||||
Sbjct 831 ATGATATATAGT 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5