BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475079
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62730.1 | Symbols: | Terpenoid synthases superfamily prote... 1480 0.0
> AT1G62730.1 | Symbols: | Terpenoid synthases superfamily protein
| chr1:23229059-23230736 REVERSE LENGTH=1251
Length=1251
Score = 1480 bits (801), Expect = 0.0
Identities = 887/929 (95%), Gaps = 3/929 (0%)
Strand=Plus/Plus
Query 1 ATGAATGGAGGAGGCTC---TAGTTTACGTTCAGCATTGTCCTATTGTGTACAACAAGTA 57
||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||
Sbjct 192 ATGAATGGAGGAGGCTCGAGTAGTTTGCGTTCAGCATTGTCCTATTGTGTGCAGCAAGTA 251
Query 58 CGAAACTATGACTATCATCACTACCTCTGTCTCCTTGAACTCCCAACTGAGATGCGTAAA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CGAAACTATGACTATCATCACTACCTCTGTCTCCTTGAACTCCCAACTGAGATGCGTAAA 311
Query 118 GCCGCATTTGCTCTCCGGGCTTTCAATGTAGAAACTGCAAGAGCCATGGATGTTGCATCT 177
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 312 GCAGCATTTGCTCTCCGGGCTTTTAATGTAGAAACCGCAAGAGCCATGGATGTTGCATCT 371
Query 178 GATCCCAAAATTGGCTTGATGCGGCTGCTTTGGTGGCAAGAAGCAATTGACAAACTCTAC 237
||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 372 GATCCCAAAATCGGCTTGATGCGGTTACTTTGGTGGCAAGAAGCAATTGACAAACTCTAC 431
Query 238 ACCAAAAAACCCATAAACCATCCAGCTGCACAAGCTCTGTCTTGGGCAATATCAGAGCAT 297
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 432 ACCAAAAAGCCCATAAACCATCCAGCTGCACAAGCTCTGTCTTGGGCAATATCAGAACAT 491
Query 298 AGCATCAGTAAACCTTGGCTAAAGCGCTCGGTTGAAGCTAGAATCCGAGATGCGCAAAGA 357
| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 492 AACATCAGTAAACCTTGGCTAAAACGCTCAGTTGACGCTAGAATCCGAGATGCCCAAAGA 551
Query 358 GAAGTAGACGATATACCAGAGAGTATCGAGGAGCTAGAGAAATACGCAGAAGACACGGTT 417
||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||
Sbjct 552 GAAGTAGACGATATACCAGAGAGCATTGCGGAGCTAGAGAAATACGCAGAAGACACAGTT 611
Query 418 TCCACTCTTCTGTACAATACACTCCAAGCTGGCGGAATTAGTTCAACAACAGCGGATCAC 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 612 TCCACTCTTCTGTACAATACACTCCAAGCAGGCGGAATTAGTTCAACAACAGCTGATCAT 671
Query 478 GCAGCTTCACACATTGGTAAAGCCAGTGGTCTTGTCTTGCTACTGAAATCATTACCGTAC 537
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 672 GCAGCTTCACACATTGGTAAAGCCAGTGGTCTTGTCTTGCTGCTTAAATCATTACCGTAC 731
Query 538 CATTGTACCAGAAACCGTCACCAGAGTTACATCCCTGCAGATCTCGCAGAGAAGCACGGG 597
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 732 CACTGTACCAGAAACCGTCACCAGAGTTACATCCCTGCAGATCTCGCTGAGAAGCACGGG 791
Query 598 TTGCTCGTAAAACAAGGTGGACGATTAGAAATTCTTCTGGATAACAATTCAAGAGAAGGA 657
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 792 TTGCTCGTGAAACAAGGTGGACGATTAGAAATTCTTCTGGATAACGATTCAAGAGAAGGA 851
Query 658 CTAAGCAATGTCGTGTTTGAGATTGCATCTGTTGCCAATGCACATCTCCTGAAAGCCCGT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CTAAGCAATGTCGTGTTTGAGATTGCATCTGTTGCCAATGCACATCTCCTGAAAGCCCGT 911
Query 718 GAACTGGCGGGAAAGGTTCCTGCAGAAGCTAAACCCGTTCTGCTTCATTCCGTGCCGGTA 777
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 912 GAACTGGCGGGAAAGGTTCCTGCAGAAGCTAAACCGGTACTGCTTCATTCTGTGCCGGTA 971
Query 778 CAAGTTCTTCTGGATTCGTTAAATAAAGTACAATTCGATGTGTTTGATCCGAGGATTCAA 837
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 972 CAAGTTCTTCTGGATTCGTTAAATAAAGTACAATTCGATGTGTTTGATCCCAGGATTCAA 1031
Query 838 AGAGGAGTTCTTGGTGTTCCTCCACTCTTGTTTCAGTTTAAACTCAAGTGGTATTCATGG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 AGAGGAGTTCTTGGTGTTCCTCCACTCTTGTTTCAGTTTAAACTCAAGTGGTATTCATGG 1091
Query 898 AGAGCTATGTTCTGATTTCTTGCCTTTAT 926
||||| ||||| ||| |||| ||||||
Sbjct 1092 AGAGCAATGTTTTGAAAACTTGTCTTTAT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5