BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475080
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2128 0.0
> AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:23227532-23229150 FORWARD LENGTH=1619
Length=1619
Score = 2128 bits (1152), Expect = 0.0
Identities = 1397/1516 (92%), Gaps = 13/1516 (1%)
Strand=Plus/Plus
Query 1 ACAGATACAGAGATTACGAACAAAACGAGCTTAATCAAATCAAATGCAGAGATCGATCAC 60
||||||||| |||||||||| |||||||| ||||| || |||||||| |||||||| |||
Sbjct 1 ACAGATACATAGATTACGAATAAAACGAGGTTAAT-AATTCAAATGCGGAGATCGACCAC 59
Query 61 GATCTCAATTGCATCAAAAGCAAAGAAATTTCTCAATCTGTGTCTTCTGGAGAAAGGTAA 120
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 60 GATCTCAATTGCATCAAAAGCAAATAAATTTCTCAATCTGTGTCTTCTCCAGAAAGGTAA 119
Query 121 TCGTGTAACTGCTCCTTTCATTAGCCGTTTCTGGGGAAGAGCTTTTACTACTAAGAGATT 180
|| ||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 120 TCCTGTAATTGTTCCTTTCATTAGCCGTTTCTGGGGAAGAACTTTTTCTACTAAGAGATC 179
Query 181 GAGTATGAATTTAGACGAAGCAATTGATTTGTTCTGTAACATGATTCAATCTCGTCCTCT 240
||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 180 GAGTATGAATTTAGAAGAAGAAATTGATTTGTTCTGTAAAATGATTCAATCTCGTCCTCT 239
Query 241 TCCTTCAATTGTTGAATTCAGTAAATTGTTGAGTAATATCGCCAAATCAAAGAATTACGA 300
||||||||| ||||| ||||||||| | |||||||| ||||||||||| |||||||||||
Sbjct 240 TCCTTCAATAGTTGATTTCAGTAAAGTATTGAGTAAAATCGCCAAATCGAAGAATTACGA 299
Query 301 TCTTGTGATCTCTCTGTTTCACAATATGG-AGATTTGTGGAATTGGGCATGATCTTTATA 359
|||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||
Sbjct 300 TCTTGTGATCTCTCTGTTTCACCATATGGAAG-TTTGTGGAATTGGTCATGATCTTTATA 358
Query 360 CTTATAACATTGTGATTAATTGTTTGTGTCGATGCTCTCGATTTGTTATTGCTTTATCTG 419
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 GTTACAACATTGTGATTAATTGTTTATGTCGATGCTCTCGATTTGTTATTGCTTTATCTG 418
Query 420 TTGTTGGGAAGATGATGAAGTTTGGTTACGAGCCCGATGTTGTCACGGTTAGTTCTTTGA 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TTGTTGGGAAGATGATGAAGTTTGGTTACGAGCCTGATGTTGTCACGGTTAGTTCTTTGA 478
Query 480 TTAATGGATTTTGTCAAGGGAATAGAGTTTTTGATGCTGTAGATTTGGTTAGTAAAATGG 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 TTAATGGATTTTGTCAAGGGAATAGAGTTTTTGATGCTATAGATTTGGTTAGTAAAATGG 538
Query 540 AGGAAATGGGATGTAAACTAGATGTTGTTATCTACAATACGATCATCGACGGTTTTTGTA 599
|||||||||||| || || |||||||||||||||||| |||||||||||||||| |||||
Sbjct 539 AGGAAATGGGATTTAGACCAGATGTTGTTATCTACAACACGATCATCGACGGTTCTTGTA 598
Query 600 AAACCGGATTGGTGAATAACGCGTTGGTGTTGTTCGAGCGGATGGAAAGAGATGGGGTTA 659
| | ||| ||||||||| ||||| ||| | |||| || ||||||||||||||||||||||
Sbjct 599 AGATCGGGTTGGTGAATGACGCGGTGGAGCTGTTTGATCGGATGGAAAGAGATGGGGTTA 658
Query 660 GAGCGGATACTGTTACTTATAACTCTCTTGTGACCGGTCTTTGTTGTTCCGGTAGAAGGA 719
|||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 659 GAGCTGATGCTGTTACTTATAACTCTCTTGTGGCCGGTCTTTGTTGTTCTGGTAGATGGA 718
Query 720 GTGATGCTGCTCGGCTTATGAGAGATATGGTTATGAGGGATATTGTTCCTAATGT-AGTT 778
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 719 GTGATGCAGCTCGGCTAATGAGAGATATGGTAATGAGGGATATTGTTCCTAATGTCA-TT 777
Query 779 ACTTTCACTGCGTTGATCAATGCGTTTGTGAGAGAAGGGAAATTTTTGGAGGCGAAGAAG 838
|||||||||||| ||||| ||| |||||||| ||||||||| |||| |||||||| ||||
Sbjct 778 ACTTTCACTGCGGTGATCGATGTGTTTGTGAAAGAAGGGAAGTTTTCGGAGGCGATGAAG 837
Query 839 TTTTACAAGGAGATGATTCGAAGGTGTATAAATCCGGATGTTTTCACTTACAATTCGATG 898
|| ||| ||||||||| ||||||||| || |||||||||||||||||||||||||| ||
Sbjct 838 TTGTACGAGGAGATGACACGAAGGTGTGTAGATCCGGATGTTTTCACTTACAATTCGTTG 897
Query 899 ATCCATGGTCTTTGTATGCACGGTCAGGTAGATGAGGCCAAACAAATTCTTGATTTGATG 958
||| | ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 898 ATCAACGGTCTTTGTATGCACGGTCGGGTAGATGAGGCCAAACAAATGCTTGATTTGATG 957
Query 959 GTAACAAAGGGTTGTTTCCCCGATGTTGTGACTTATAATACTCTCATTAACGGGTTTTGC 1018
||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 GTAACTAAGGGTTGTCTCCCCGATGTAGTGACTTATAATACTCTCATTAACGGGTTTTGC 1017
Query 1019 AAGACTAAGAGAGTAGATGAAGGGACGAAACTCGTCCGCGAGATGTCTCAAAGAGGATTA 1078
||| ||||||| || |||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 1018 AAGTCTAAGAGGGTTGATGAAGGAACGAAACTCTTCCGCGAGATGGCTCAAAGAGGATTA 1077
Query 1079 GTTG-TCGACAC-AGTCACTTTCAACACTATTATCCAGGGCTATTTTCAAGCGGGTAGAC 1136
|||| | ||||| | |||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 GTTGGT-GACACTA-TCACATACAACACTATAATCCAGGGCTATTTTCAAGCGGGTAGAC 1135
Query 1137 CAGATGCCGCGCAAGAAATTTTCAGTCGGATGGATTCTCGTCCCAATATTAGGACCTACA 1196
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 CAGATGCGGCGCAAGAAATTTTCAGTCGGATGGATTCTCGTCCCAATATTAGGACGTACA 1195
Query 1197 GCATTTTGTTATATGGGCTTTGTAAT-AACTGGAGGGTAGAGAAAGCACTGGTGCTATTC 1255
|||||||||| ||||||||||||| | ||||||||||||||||||||| ||||| |||||
Sbjct 1196 GCATTTTGTTGTATGGGCTTTGTA-TGAACTGGAGGGTAGAGAAAGCATTGGTGTTATTC 1254
Query 1256 GAGAGTATGCAAAAGATTGAAATGGAGCTTGATATTACGACATATAATATCGTCATTCAC 1315
|||| ||||||||||| |||||| || ||||||||||| || ||||||||||||||||||
Sbjct 1255 GAGAATATGCAAAAGAGTGAAATAGAACTTGATATTACTACTTATAATATCGTCATTCAC 1314
Query 1316 GGGATGTGCAAGATTGGTAATGTCGAAGATGCATGGGACTTGTTTTGTAGCCTTTCCTT- 1374
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||
Sbjct 1315 GGGATGTGCAAGATTGGTAATGTTGAAGATGCGTGGGACTTGTTTCGTAGCCTTTC-TTG 1373
Query 1375 CAAAGGACTTGAGCCTGATGTTGTAACCTACACTACAATGATCTCAGGATTTTGTAGGAA 1434
|||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 1374 CAAAGGACTTAAGCCTGATGTTGTGTCCTACACTACGATGATCTCAGGCTTTTGTAGGAA 1433
Query 1435 ACGCCTATGGGATAAAGCAGATTTTTTGTACAGAAAAATGCAAGAAGATGGGCTTCTTCC 1494
||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1434 ACGCCAATGGGATAAATCAGATTTGTTGTACAGAAAAATGCAAGAAGATGGGCTTCTTCC 1493
Query 1495 GTTATAACATATGAAA 1510
|||||||||||||||
Sbjct 1494 ATTATAACATATGAAA 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5