BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475082
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62700.1 | Symbols: VND5, ANAC026 | Arabidopsis NAC domain c... 1725 0.0
AT1G12260.1 | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007... 706 0.0
AT3G61910.1 | Symbols: NST2, ANAC066, NAC066 | NAC domain prote... 195 1e-48
> AT1G62700.1 | Symbols: VND5, ANAC026 | Arabidopsis NAC domain
containing protein 26 | chr1:23216218-23217916 REVERSE LENGTH=1185
Length=1185
Score = 1725 bits (934), Expect = 0.0
Identities = 1122/1208 (93%), Gaps = 32/1208 (3%)
Strand=Plus/Plus
Query 1 ATGAATTCGTTTTCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTCGTTTTCACAAGTACCTCCTGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60
Query 61 GTTGACTACTACTTGAGGAAAAAAGTAGCATCGAAGAGAATAGAAATCGATTTCATCAAT 120
|| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 61 GTAGACTACTACTTGAGGAAAAAAGTTGCATCAAAGAGAATAGAAATCGATATCATCAAG 120
Query 121 GACGTTGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAAC 180
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GATGTTGATCTTTACAAGATTGAGCCATGTGATCTTCAAGAGTTATGCAAGATAGGAAAC 180
Query 181 GAAGAGCAAAGCGAATGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCTACAGGAACT 240
|||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 181 GAAGAGCAGAGCGAATGGTACTTCTTTAGTCATAAAGACAAGAAGTATCCCACGGGAACT 240
Query 241 CGAACCAATAGAGCGACGAAAGCAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATA 300
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 241 CGAACCAATAGAGCCACGAAAGCAGGATTTTGGAAAGCCACTGGAAGAGACAAGGCTATA 300
Query 301 TATATAAGACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGCC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TATATAAGACATAGTCTTATCGGTATGAGGAAAACACTTGTGTTTTACAAAGGAAGAGCC 360
Query 361 CCAAATGGACAGAAATCCGATTGGATCATGCACGAATATCGCTTAGAAACAAATGAAAAT 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 CCAAATGGTCAGAAATCCGATTGGATCATGCACGAATATCGCTTAGAAACAAGTGAAAAT 420
Query 421 GGAACTCCTCAGGAAGAAGGATGGGTGGTATGTAGGGTGTTCAAGAAGAAATTGGCAGCG 480
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 421 GGAACCCCTCAGGAAGAAGGATGGGTAGTATGTAGGGTATTCAAGAAGAAATTGGCAGCG 480
Query 481 ACGGTGAGGAAAATGGGAGATTACAATTCATCACCAT--C-GCATTGGTACGATGATCAG 537
|| ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 481 ACAGTGAGGAAAATGGGAGATTACCATTCATCACCATCGCAGCATTGGTACGATGATCAG 540
Query 538 CTCTCTTTTATGGCCTCCGAGCTTGA-TTCTAGTTCTCCACGACAGTTTCTTCCCAATCA 596
||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 541 CTCTCTTTTATGGCCTCCGAG-ATCATTTCTAGTTCTCCACGACAGTTTCTTCCCAATCA 599
Query 597 TCATTATAACCGCCACCATCACCATCACCAGCATACATTACCTTGTGGCCTCAATGCGTC 656
|||||||||||||||||||||||| || | | |||| |||||||||||||||||
Sbjct 600 TCATTATAACCGCCACCATCACCAGCA---G-A--CATTGCCTTGTGGCCTCAATGC--- 650
Query 657 TTCAGCTTATGCATTCAACAACAACAACAACCCTAACTTGCAATGCAAGCAAGAGCTCGA 716
| || || | ||||||||| || |||||||||||||||||||||||||||
Sbjct 651 ---A--TT---CA---A-CAACAACAAT--CC-TAACTTGCAATGCAAGCAAGAGCTCGA 695
Query 717 GTTACATTACAATCACATGGTACAACATCAACAACAAAACCATCATCTGCGTGAATCTAT 776
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 696 GTTACATTACAATCAAATGGTACAACATCAACAACAAAACCATCATCTTCGTGAATCTAT 755
Query 777 GTTCCTCCAGCTTCCTCAGCTCGAAAGCCCTACTAGTAATTGCAACTCTAACAACAACAA 836
||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 756 GTTTCTCCAGCTTCCTCAGCTCGAAAGCCCTACCAGTAATTGCAATTCTGACAACAACAA 815
Query 837 TAACACAAGAAATATTGGTAACTTGCAGAAATCATCAAATATCTCTCATGAGGAACAATT 896
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 816 TAACACAAGAAATATTAGTAACTTGCAGAAATCATCAAATATATCTCATGAGGAACAATT 875
Query 897 GCAACAAGGGAATCAAAGTTTCAGCACTCTTTATTACGATCAAGGAGTAGAGCAAATGAC 956
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 876 GCAACAAGGGAATCAAAGTTTCAGCTCTCTGTATTACGATCAAGGAGTAGAGCAAATGAC 935
Query 957 TACTGATTGGAGAGTTTTCGATAAATTTGTTGCTTCACAGCTTAGCAATGA--A-GAGGC 1013
|||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 936 TACTGACTGGAGAGTTCTCGATAAATTTGTTGCTTCACAGCTTAGCAATGATGAAGAGGC 995
Query 1014 TGCAGCCGAGGCTTCTACCTCTTCTCATCACAACAACGTCAAGATTGACACAAGAAACCC 1073
|||||||| || |||| | ||||||||||| |||||||||||||||||||| |||||| |
Sbjct 996 TGCAGCCGTGGTTTCTTCTTCTTCTCATCAAAACAACGTCAAGATTGACACGAGAAACAC 1055
Query 1074 GGTTTATCAAGTGATAGATGAGGGAATAAATTTGCCGGAGAATGATTCTGAAAGGGTTGT 1133
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GGGTTATCATGTGATAGATGAGGGAATAAATTTGCCGGAGAATGATTCTGAAAGGGTTGT 1115
Query 1134 TGAAATGAGAGATGAGTATACAAATTCTCATGCTGCTTCTACTTCTTCGAGTTGTCAGAT 1193
||||||| |||| |||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 1116 TGAAATGGGAGAAGAGTATTCAAATGCTCATGCTGCTTCTACTTCTTCAAGTTGTCAGAT 1175
Query 1194 TGATCTCT 1201
||||||||
Sbjct 1176 TGATCTCT 1183
> AT1G12260.1 | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007
| chr1:4162832-4165852 REVERSE LENGTH=1871
Length=1871
Score = 706 bits (382), Expect = 0.0
Identities = 628/745 (84%), Gaps = 24/745 (3%)
Strand=Plus/Plus
Query 1 ATGAATTCGTTTTCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60
|||||||| ||||| || || |||||||| || |||||||| || || ||||||||||||
Sbjct 458 ATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTT 517
Query 61 GTTGACTACTACTTGAGGAAAAAAGTAGCATCGAAGAGAATAGAAATCGATTTCATCAAT 120
|| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 518 GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAG 577
Query 121 GACGTTGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAAC 180
||| |||||||||||||||||||||||||||| ||||||||||| ||||| || || |
Sbjct 578 GACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGAGTTGTGCAAAATTGGGCAT 637
Query 181 GAAGAGCAAAGCGAATGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCTACAGGAACT 240
|||||||| || || ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 638 GAAGAGCAGAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCCACAGGGACT 697
Query 241 CGAACCAATAGAGCGACGAAAGCAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATA 300
|||||||||||||| || |||||||| || |||||||||||||||||||| ||||||||
Sbjct 698 CGAACCAATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGAGATAAGGCTATC 757
Query 301 TATATAAGACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGCC 360
||| | || |||||||| || || |||||||| ||||||||||||||||| |||||||||
Sbjct 758 TATTTGAGGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCC 817
Query 361 CCAAATGGACAGAAA-TCCGATTGGATCATGCACGAATATCGCTTAGAAACAAATGAAAA 419
||||||||||| ||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 818 CCAAATGGACA-AAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAA 876
Query 420 TGGAACTCCTCAGGAAGAAGGATGGGTGGTATGTAGGGTGTTCAAGAAGAAATTGGCAGC 479
|||||||||||||||||||||||||| || |||||||| |||||||||| |||||| ||
Sbjct 877 CGGAACTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAGATTGGCTGC 936
Query 480 GACGGT-GAGGAAAATGGGAGATTACAATTCATCACCATCGCATTGGTACGATGATCAGC 538
| | | || ||| ||||||||||| | ||||| || || ||||||||||||||||| |
Sbjct 937 -A-GTTAGACGAA--TGGGAGATTACGACTCATCCCCTTCACATTGGTACGATGATCAAC 992
Query 539 TCTCTTTTATGGCCTCCGAGCTTGATTCTAGTTCTCCACGACAGTTTCTTCCCAATCATC 598
| |||||||||||||||||||| || | | || ||||| | |||| ||||||||||
Sbjct 993 TTTCTTTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTCCCCAATCATC 1052
Query 599 ATTATAACCGCCACCATCACCATCACCAGCATACAT-TACCTTGTGGCCTCAATGCGTCT 657
|| | | || | || ||| | ||||| || |||| | || | |||||||||||| |||
Sbjct 1053 ATCAGCA--GC-AGCAGCACGAGCACCAACA-ACATATGCCATATGGCCTCAATGCATCT 1108
Query 658 TCAGCTTATGCATTCAACAACAACAACAACCCTAACTTGCAATGCAAGCAAGAGCTCGAG 717
||||| || | | ||||||| | | |||||||||||||||||||||||| ||
Sbjct 1109 ---GCTTACGC-T-CT-CAACAAC--C--C--TAACTTGCAATGCAAGCAAGAGCTAGAA 1156
Query 718 TTACATTACAATCACATGGTACAAC 742
|||| ||||| ||| |||||||||
Sbjct 1157 CTACACTACAACCACCTGGTACAAC 1181
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1166 CTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTCTGGAA 1205
|||||||||||||||||||||||||||||||||| |||||
Sbjct 1602 CTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTATGGAA 1641
> AT3G61910.1 | Symbols: NST2, ANAC066, NAC066 | NAC domain protein
66 | chr3:22929006-22930442 REVERSE LENGTH=1227
Length=1227
Score = 195 bits (105), Expect = 1e-48
Identities = 306/400 (77%), Gaps = 26/400 (7%)
Strand=Plus/Plus
Query 13 TCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTTGTTG-ACTACTA 71
|||||||||||||| ||||| || ||||| || || || ||||| | | ||| | || ||
Sbjct 60 TCACAAGTACCTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGC-TCTTGAAGTATTA 118
Query 72 -CT-TG-AGGAAAA-AAGTAGCATCGAAGAGAATAGAAATCGAT-TTCA-TCAATGACGT 125
|| | | ||||| || |||| | || || || ||||| || | || |||| |
Sbjct 119 CCTCCGCAAGAAAATCTCTAACATC--A-AG-ATCGATCTCGATGTT-ATTC-CTGACAT 172
Query 126 TGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAACGAAG- 184
|||||| ||||| | ||||| |||||| |||||||| | || ||||| || ||||| |
Sbjct 173 TGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGTGTAAGATTGG-AACGACGC 231
Query 185 AGCAAAGCGAATGGTACTTCTT-TAGCCATAAAGACAAGAAGTATCCTACAGGAACTCGA 243
||||| ||| |||||||| || ||||||||| |||||||||||||| || || ||| ||
Sbjct 232 CGCAAAACGATTGGTACTT-TTATAGCCATAAGGACAAGAAGTATCCCACCGGGACTAGA 290
Query 244 ACCAATAGAGCGACGAAAG-CAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATATA 302
||||| ||||| || | | | ||||| |||||||| || ||| | |||||| | |||||
Sbjct 291 ACCAACAGAGCCACCACGGTC-GGATTTTGGAAAGCGACGGGACGTGACAAGACCATATA 349
Query 303 TA-TAA--GACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGC 359
|| || | |||| ||||| ||| | ||||| ||||| || |||||||| ||||
Sbjct 350 TACCAATGGTGATAG---AATCGGGATGCGAAAGACGCTTGTCTTCTACAAAGGTCGAGC 406
Query 360 CCCAAATGGACAGAAATCCGATTGGATCATGCACGAATAT 399
||| |||| ||||||||||||||||||||||||||||||
Sbjct 407 CCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATAT 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5