BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475085
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62640.1 | Symbols: KAS III | 3-ketoacyl-acyl carrier protei... 2591 0.0
> AT1G62640.1 | Symbols: KAS III | 3-ketoacyl-acyl carrier protein
synthase III | chr1:23192228-23195103 FORWARD LENGTH=1855
Length=1855
Score = 2591 bits (1403), Expect = 0.0
Identities = 1686/1815 (93%), Gaps = 50/1815 (3%)
Strand=Plus/Plus
Query 1 GCATTGGAATCTCCTCAAAATTGAGCTGTCACACTCACCTCCCCTGTCTCCTCTTCGCTT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 14 GCATTGGAATCTCCTCAAAATCGAGCTGTCACACTCACCTCCCCTGTCTCCTCTTCGCTT 73
Query 61 CGGTACTTCCGAAGATTTGA---T-T------T---T-CTCTCTCACACACACCTAAATT 106
|||||||||||||||||| | | | | | ||||||||||||||||| ||||
Sbjct 74 CGGTACTTCCGAAGATTTCATTTTCTAGACACTCCATCCTCTCTCACACACACCTTAATT 133
Query 107 TCGAATTTTTGTCTATTGGTGATTCAATTACTCT-AATTTCGAGCTGAGAGAGACAGACA 165
||||||||||||| ||||||||| || ||||||| || |||||||||||||| || ||
Sbjct 134 TCGAATTTTTGTCAATTGGTGATGCAGTTACTCTGAA-CTCGAGCTGAGAGAG--AGGCA 190
Query 166 TAGAGATCCTT-CGATTCGTTGTATCCAAAACATTT---AA---C-TTTTGTTTTTCTTC 217
||||||||||| ||||||||||||||| ||||||| || | ||||||||||||||
Sbjct 191 TAGAGATCCTTGCGATTCGTTGTATCCGTAACATTTAACAATCTCGTTTTGTTTTTCTTC 250
Query 218 TGTTCCTC--TTATC-A-AATC-AATGGCGAATGCATCTGGGTTCTTCACTCATCCTTCA 272
|||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 251 TGTTCCTCTATTATCAACAATCAAATGGCTAATGCATCTGGGTTCTTCACTCATCCTTCA 310
Query 273 ATTCCTAACTTACGAAGCAGAATCCATGTTCCGATTAGAGTTTCTGGATCTGGGTTTTGC 332
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 311 ATTCCTAACTTGCGAAGCAGAATCCATGTTCCGGTTAGAGTTTCTGGATCTGGGTTTTGC 370
Query 333 GTTTCGAGTCGATTCTCCAAAAGGGTTTTGTGCTCTAGCGTCAGCTCTATCGATAAACAT 392
||||| | ||||||||| || |||||||||||||||||||||||||| ||||||| ||
Sbjct 371 GTTTCCAATCGATTCTCTAAGAGGGTTTTGTGCTCTAGCGTCAGCTCCGTCGATAAGGAT 430
Query 393 GCTTCGTCGTCTCCTTCTGAATATCAACGACCCAGGCTAGTGCCGAGTGGCTGCAAATTG 452
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GCTTCGTCTTCTCCTTCTCAATATCAACGACCCAGGCTAGTGCCGAGTGGCTGCAAATTG 490
Query 453 ATTGGATGTGGTTCAGCAGTTCCAAGTCTTCTGATTTCTAATGATGATCTCGCTAAAATA 512
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 ATTGGATGTGGATCAGCAGTTCCAAGTCTTCTGATTTCTAATGATGATCTCGCTAAAATA 550
Query 513 GTCGATACTAATGATGAATGGATAGCTACTCGTACTGGTATTCGCAACCGTCGAGTTGTC 572
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 551 GTTGATACTAATGATGAATGGATTGCTACTCGTACTGGTATTCGCAACCGTCGAGTTGTC 610
Query 573 TCAGGCAAAGATAGCTTGGTTGGCTTAGCAGTAGAAGCAGCAACCAAAGCCCTTGAAATG 632
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 611 TCAGGCAAAGATAGCTTGGTTGGCTTAGCAGTAGAAGCAGCAACCAAAGCTCTTGAAATG 670
Query 633 GCTGAGGTTGTTCCGGAAGATATAGACTTAGTCTTGATGTGCACTTCCACTCCTGATGAT 692
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 671 GCTGAGGTTGTTCCTGAAGATATTGACTTAGTCTTGATGTGTACTTCCACTCCTGATGAT 730
Query 693 CTATTTGGTGCTGCTCCACAGATTCAAAAGGCACTTGGTTGCACGAAGAACCCATTGGCT 752
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 731 CTATTTGGTGCTGCTCCACAGATTCAAAAGGCACTTGGTTGCACAAAGAACCCATTGGCT 790
Query 753 TACGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCAT 812
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TATGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCAT 850
Query 813 ATAAGGGGAGGCGGTTTTAAGAATGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTT 872
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 851 ATAAGGGGAGGCGGTTTTAAGAACGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTT 910
Query 873 GTTGACTGGACGGATAGAGGGACTTGCATTCTATTTGGGGACGCTGCTGGTGCTGTGGTT 932
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 911 GTTGATTGGACGGATAGAGGGACTTGCATTCTATTTGGAGATGCTGCTGGTGCTGTGGTT 970
Query 933 GTTCAGGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTCGATGTGCACAGCGATGGG 992
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 971 GTTCAGGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGATGGG 1030
Query 993 GACGGTCGAAGACATCTGAATGCTTCTATTAAAGAATCCCAAATCGATGGTGAATCGAGT 1052
|| |||||||||||| ||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 1031 GATGGTCGAAGACATTTGAATGCTTCTGTTAAAGAATCCCAAAACGATGGTGAATCAAGC 1090
Query 1053 TCCAATGGCTCGGTGTTTGGAGACTTTCCACCAAAACAATCTTCATATTCTTGTATTCAG 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TCCAATGGCTCGGTGTTTGGAGACTTTCCACCAAAACAATCTTCATATTCTTGTATTCAG 1150
Query 1113 ATGAATGGGAAAGAGGTCTTTCGCTTTGCTGTAAAATGTGTTCCTCAATCTATTGAGTCC 1172
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1151 ATGAATGGAAAAGAGGTCTTTCGCTTTGCTGTCAAATGTGTTCCTCAATCTATTGAATCT 1210
Query 1173 GCTTTACAAAAAGCCGGTCTTCCTGCTTCTGCCATCGACTGGCTCCTCCTCCATCAGGCG 1232
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1211 GCTTTACAAAAAGCTGGTCTTCCTGCTTCTGCCATCGACTGGCTCCTCCTCCACCAGGCG 1270
Query 1233 AACCAGAGAATAATAGACTCTGTGGCTACAAGGCTGCATTTTCCACCAGAGCGAGTCATA 1292
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1271 AACCAGAGAATAATAGACTCTGTGGCTACAAGGCTGCATTTCCCACCAGAGAGAGTCATA 1330
Query 1293 TCGAATTTGGCTAATTACGGTAACACGAGCGCTGCTTCCATCCCTCTGGCTCTTGATGAG 1352
||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct 1331 TCGAATTTGGCTAATTATGGTAACACGAGCGCTGCTTCGATTCCGCTGGCTCTTGATGAG 1390
Query 1353 GCAGTTAGAAGCGGAAAAGTTAAACCAGGACATACCATAGCAACATCCGGTTTTGGAGCC 1412
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1391 GCAGTGAGAAGCGGAAAAGTTAAACCAGGACATACCATAGCGACATCCGGTTTTGGAGCC 1450
Query 1413 GGTTTAACGTGGGGATCAGCAATTGTCCGATGGAGATGAATGGCTAAGTCCGACA-TGTA 1471
|||||||||||||||||||||||| | |||||||| ||||||||||||||| ||| ||||
Sbjct 1451 GGTTTAACGTGGGGATCAGCAATTATGCGATGGAGGTGAATGGCTAAGTCCAACAATGTA 1510
Query 1472 AGTTAACTTCAGAGCCAAAGttttttttCTCCCCCGACGAACACTGGAAATTGGTTTAAA 1531
|||||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||
Sbjct 1511 AGTTAACTTCAGAGCCAAAGCTTTTTT-CTCCCTCGAGGAACACTGGAAATTGGTTTAAC 1569
Query 1532 CGGTCTTGTTAAGCCCGGTTAAACTAGAGGTAAAGCGCATTTTGTCTGAATTCGGTCTCT 1591
|||||||||| || |||||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 1570 CGGTCTTGTTTAGTCCGGTTAAACTAAAGGTAAAGCACATTTTGTCTGAATTCAGTCTCT 1629
Query 1592 CTCTTTTTGAAGGTTTCATTGTTGTTACGTGTT-A--TTT---A-TT-T--CGAATGCTA 1641
|| |||||||||||| |||||||||||| |||| | ||| | || | |||||||||
Sbjct 1630 CTTTTTTTGAAGGTT-CATTGTTGTTACTTGTTTAACTTTGTTAGTTATTTCGAATGCTA 1688
Query 1642 ATAATgaaaaagaaggaaaagaaaaagTAGCATTCTTT-ATCATTTCTTGTTTGTAATGT 1700
|||| ||||||||| ||| ||||| | |||||||||| |||||||||||||||||||||
Sbjct 1689 ATAACCAAAAAGAAG-AAA-GAAAAGGGAGCATTCTTTCATCATTTCTTGTTTGTAATGT 1746
Query 1701 TAAGACAACATTTCTCCATTTGCTTAA-TCTTGTT-TTCTTCTGTTTTTGAGAACTATTA 1758
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 1747 TAAGACAACATTTCTCCATTTGCTTAAATCTT-TTCTTCTTCTGTTTTTGAGAACTATTA 1805
Query 1759 GGATCAGAATGGTTT 1773
| |||| |||| |||
Sbjct 1806 GAATCAAAATGTTTT 1820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5