BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475095
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1519 0.0
AT4G22560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 71.3 2e-11
> AT1G62520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G12450.1);
Has 388 Blast hits to 388 proteins in 26 species: Archae -
0; Bacteria - 1; Metazoa - 0; Fungi - 8; Plants - 376; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:23144412-23145509
FORWARD LENGTH=1098
Length=1098
Score = 1519 bits (822), Expect = 0.0
Identities = 1010/1097 (92%), Gaps = 27/1097 (2%)
Strand=Plus/Plus
Query 1 CTTCTGCTTCTGTTTCTTTTCCAAGTTTTT--A-A-AGAGAGAG-G---GAAAGAAACaa 52
|||||||||||||||||||||||||||||| | | |||||||| | |||||||| ||
Sbjct 1 CTTCTGCTTCTGTTTCTTTTCCAAGTTTTTAAAGAGAGAGAGAGAGACTGAAAGAAA-AA 59
Query 53 -aaaaaaCAGAGAGCATTT-GTTCCGGATCTTGATTATGGCAAGCGGGTGGGTCAAATCG 110
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 60 CAAAAAACAGAGAGC-TTTGGTTCCGGATCTTGATTATGGCAAATGGGTGGGTCAAATCG 118
Query 111 TTACAATGCAAATCTAAAGCTTTCGATGATGTTTATAATCCGATTAAAAACCCTAACCCG 170
||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 119 TTACAATGCAAGTCGAAAGCTTTCGATGATGTTTACAATCCGATTAAAAACCCGAACCCG 178
Query 171 AATCCGAACCCGAGTCCGAAACATCTCATGTCAAGTTACAGTTGCAGAAGAAGCACACAG 230
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 179 AATCCGAGCCCGAGTCCGAAACATCTCATGTCAAGCTACAGTTGCAGAAAAAGCACACAG 238
Query 231 AGTCTCAAAGATGTGATCGaaaccaaaaaaaccaaaccaaaaccgaagaaacccaaat-c 289
||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |
Sbjct 239 AGTCTAAAAGATGTGATCGAAACCAAAAAACCCAAACCTAAACCGAAGAAACCC-AATCC 297
Query 290 aaaacccgataaacgagaacccgacccgGTTTTATCTCCTTCAACCCGGATCCGATCAAC 349
|||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 298 AAAACCGGATAAACGAGAAACCGACCCGGTTTTATCACCATCAACCCGGATCCGATCAAC 357
Query 350 CGGAGCTCGTGATCGTGACCCGTTTCTACCGACGTTAACGGAGCTCGCGGAAGGTCATCA 409
||||| |||||||||||| |||||| ||||||| || |||||||| |||||||||||||
Sbjct 358 CGGAGTTCGTGATCGTGATCCGTTTTTACCGACATTGACGGAGCTATCGGAAGGTCATCA 417
Query 410 GTCGCGTAATGTGGTGGAGATTAT-TTTCCAGACGAGTTGGGGTCCGAAACCGTTTTCGG 468
||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 418 GTCACGTAATGTGGTGGAGATTATCTTT-CAGACGAGCTGGGGTCCGAAACCGTTTTCGG 476
Query 469 GTCGGGTAGAAATGATTTTCAAAGTGCAAAACGGGTCTAAGACTTTGACCCGGTTCGAGG 528
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 477 GTCGGGTCGAAATGATTTTCAAAGTGCAAAACGGGTCTAAGACTTTGACCCGGTTCGAAG 536
Query 529 AGTATCGTGAAGCCGTGAAAGCTAGGAGCGTGGGGAAAGCGCGTGAAGAGAACGCGCGTT 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGTATCGTGAAGCCGTGAAAGCTAGGAGCGTGGGGAAAGCGCGTGAAGAGAACGCGCGTT 596
Query 589 CCGTAGCCGACGGGAACGAGACCATGAGGTTTTACTGTTTGGGTCCGAGTTACGGCGGCG 648
| || ||||||||||| || || ||||||||||||||||||||||| |||||||| || |
Sbjct 597 CGGTTGCCGACGGGAATGAAACAATGAGGTTTTACTGTTTGGGTCCAAGTTACGGTGGAG 656
Query 649 GTGG-AGGCGCGTGGGGTATTTTAGGAGGAAAAGGCGTTGGCGCGTCGATTTACACGTTC 707
|||| || ||||||||||||||| ||||||||||||| |||||||||||| || |||||
Sbjct 657 GTGGCAG-CGCGTGGGGTATTTTGGGAGGAAAAGGCGGTGGCGCGTCGATATATACGTTT 715
Query 708 GCCGGAAGTAGTATGGCAAATGAGAAAGCCGGCGGTGGGAAAGGGAGGAAGGCTATGTTG 767
||||||||||| | ||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 716 GCCGGAAGTAGCACGGCGAATGAGAAAGCTGGCGGTGGGAAAGGGAGGAAGGCAATGTTG 775
Query 768 GTTTGTCGGGTTATAGCGGGTCGGGTCACGAAGCAAAACGAGTTAAGGTATGACTCGGAT 827
||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 776 GTTTGTCGGGTCATAGCGGGTCGGGTCACTAAGCAAAACGAGTTAAAGTATGACTCGGAT 835
Query 828 TTGAGGTCACGGTTTGACTCAGTGAGTGGTGACGACGGCGAGTTGCTCGTGTTTGATACA 887
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 836 TTGAGGTCACGGTTTGACTCAGTGAGTGGTGACGACGGAGAGTTGCTCGTGTTCGATACA 895
Query 888 CGTGCGGTGTTGCCTTGTTTTCTCATAATCTACCGTTTGTAAAAATTCCCaaaaaaaaaa 947
|||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||
Sbjct 896 CGTGCGGTGTTGCCTTGTTTTCTCATAATCTATCGGTTGTAAAAATTC--AAAAAAATAA 953
Query 948 aaaa-aCTT-ATTTTATTAACTTTT-GACATTGTAATTTCATTTATCAACGCAATTTTCC 1004
|| | || | ||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 954 AAGTTATTTTAGTTTCT-AACTTTTTGACATTGTAATTTCATTTATCAACGCAATTTTCC 1012
Query 1005 CCTAATGTTTAGGGATTT-TTTATATATTTCCAGTGTATAATTGGTAGAAAATTGTGTTG 1063
|||||||||||||||||| ||| | |||||||| |||| |||||||||||||||||||||
Sbjct 1013 CCTAATGTTTAGGGATTTGTTT-T-TATTTCCAATGTAAAATTGGTAGAAAATTGTGTTG 1070
Query 1064 ATAAATGGTAATTAATT 1080
|||||||||||||||||
Sbjct 1071 ATAAATGGTAATTAATT 1087
> AT4G22560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G12450.1);
Has 380 Blast hits to 380 proteins in 21 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11880119-11881072
FORWARD LENGTH=954
Length=954
Score = 71.3 bits (38), Expect = 2e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 861 GACGGCGAGTTGCTCGTGTTTGATACACGTGCGGTGTTGCCTTGTTT 907
|||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 786 GACGGCGAGTTGTTTGTCTTTGATACACGTGCGGTGTTGCCTTGTTT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5