BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475096
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62500.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 1903 0.0
> AT1G62500.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:23132045-23133502
FORWARD LENGTH=1458
Length=1458
Score = 1903 bits (1030), Expect = 0.0
Identities = 1220/1307 (93%), Gaps = 32/1307 (2%)
Strand=Plus/Plus
Query 1 GGTTTACACCCATACAAGAGTCACGGGTCACATTTAAGCTTCACCTATATAGTTACATGT 60
|||| |||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 1 GGTTAACACCCATACAAGAGTCACGGGTCACATTTAAGCTTCAACTATATATTTGCATGT 60
Query 61 TACTTGCCCAAAGGATTTGACAATAATGC-ACTAAGAGTTTGATTCTTGAAAACTTCAAG 119
|| ||||| |||||||||||||||||||| || |||||||| | ||||||| ||||||
Sbjct 61 TATTTGCCAAAAGGATTTGACAATAATGCAAC-AAGAGTTTCA---TTGAAAATTTCAAG 116
Query 120 AACCCTAGTTAATAACGATAATGGGTTCGAGAGTTTTGGCTTCCTTCTTTGTTGTCTTGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 117 AACCCTAGTTAATAACGATAATGGGTTCGAGAGTTTTGGCTTCCTTCTTTGTTTTCTTAA 176
Query 180 TCTTCACGGTCATCACATTGCCTCCAACGATCCAAGCTTGCACTCCTTGTACTCGTCCTC 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 177 TCTTCACGGTCATCACATTGCCTCCCACGATCCAAGCTTGCACTCCTTGTACTCGTCCTC 236
Query 240 ATCCTCCGGTTCCTAAACCTCCACACCACGGTGGTGGTGGAGGTGGTGGTAGCAAGCCGC 299
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 237 ATCCTCCGGTTCCGAAACCTCCACAACACGGCGGTGGTGGAGGTGGTGGTAGCAAGCCGC 296
Query 300 CGCCACATCACGGTGGAAAATGTGGTGGTAAACCCCCACATCACGGTGGAAAAGGTGGGG 359
| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 297 CTCCACATCACGGTGGAAAAGGTGGTGGTAAACCCCCACCCCACGGTGGAAAAGGTGGAG 356
Query 360 GACCGCCGCATCATGGT------GGAGGAGGAGGAGGGAAATCACCGCCGGTTGTTAGAC 413
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 357 GACCGCCGCATCATGGTGGAGGAGGAGGAGGAGGAGGGAAATCACCGCCGGTTGTTAGAC 416
Query 414 CTCC-CCCGGTAGTGGTGAGACCACCGCCAATCATAAGACCTCCTCCGGTTGTCTATCCA 472
|||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 417 CTCCTCCC-GTAGTGGTGAGGCCACCGCCAATCATAAGACCTCCTCCGGTCGTCTATCCA 475
Query 473 CCACCAATTGTGAGGCCACCGCCAATCACAAGACCTCCCATCATAATCCCTCCCATTCAA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 476 CCACCAATTGTGAGGCCACCGCCAATCACAAGACCTCCCATCATAATCCCTCCAATTCAA 535
Query 533 CCACCGCCGGTTACAACTCCTCCGGGACTTCTCCCGCCGATCACAactcctccgggactc 592
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 536 CCACCGCCGGTTACAACTCCTCCGGGACTCCTCCCTCCGATCACAACTCCTCCGGGACTC 595
Query 593 ctccctccggtcacaactcctccgggactcctccctccggtcacaactcctccAGGACTT 652
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 596 CTCCCTCCAGTCACAACTCCTCCGGGACTTCTCCCTCCAGTCACAACTCCTCCAGGACTT 655
Query 653 CTCCCTCCAATCATTAACCCACCTCCGGTCACAATCCCACCACCATCCTCCGGCTATCCA 712
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 656 CTCCCTCCAATCATTAACCCACCTCCGGTCACAGTCCCACCACCATCGTCCGGCTATCCA 715
Query 713 CCGTATGGTCCACCTTCCGG---AGGAGGAGGAGGCGGCGGCAAACAACCAACATGTCCG 769
|| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 716 CCATATGGTCCACCTTCCGGTGGAGGAGGAGGAGGCGGCGGCAAACAACCAACGTGTCCG 775
Query 770 ATCAACGCATTGAAGCTTGGAGCTTGTGTTGACGTTTTGGGAGGATTGATTCATATAGGG 829
||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 776 ATCAATGCATTGAAGCTTGGAGCCTGTGTTGATGTTTTGGGAGGATTGATCCATATAGGA 835
Query 830 CTAGGAAATCCGGTGGAGAATGTGTGTTGTCCAGTGTTGCAAGGGTTACTTGAGCTAGAA 889
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 836 CTTGGAAATCCGGTGGAGAATGTGTGTTGTCCAGTGTTACAAGGGTTACTTGAGCTAGAA 895
Query 890 GCAGCCGTTTGTCTTTGCACAACCATAAGACTTAAGCTTCTTAACTTAAACATCTTCATT 949
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 GCAGCCGTTTGTCTTTGCACAACCATAAGACTTAAGCTTCTCAACTTAAACATCTTCATT 955
Query 950 CCTCTTGCACTTCAAGCTCTCATCACTTGTGGGATCAACCCTCCTCCTGGTTTTGCCTGC 1009
|||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||
Sbjct 956 CCTCTTGCACTTCAAGCTCTTATCACTTGTGGGATCAATCCTCCTTCTGGTTTTGTCTGC 1015
Query 1010 CCTCCTCTCACTTGATCTAAAA-CATCCC-TTGATTTAACAAATGTACGTACGATCAAGG 1067
|||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 1016 CCTCCTCTCACTTGATCTAAAAACATCCCCTTGATTTAACAAATGTACGTATGATCAAGG 1075
Query 1068 GT--TTAAA-AGGCTTTGGTAATAATTTAAATATATATGTGGTACTTTTAATGATCATGT 1124
|| || ||||||| ||||||||| ||||||||||||||||||||| || |||| ||
Sbjct 1076 GTGGTTTTCGAGGCTTTTGTAATAATTCAAATATATATGTGGTACTTTTGATTATCAGGT 1135
Query 1125 TTGTTGATTATCTAGGGTTTTAA----CAAGTGTTGCTTTCTGTTAATGTCGTTGTTGTT 1180
||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct 1136 TTGTTGATTATCTAGGGTTTTAATTAACAAGTGTTGTTTTCTGTTATTGTCGTTGTTGTT 1195
Query 1181 ATAATTAAGCTAGGGTTTTTGCATGGCCTTCTTTAA-TTTCTTTTG--TGTAATCTTTCG 1237
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1196 ATAATTAAGCTAGGGTTTTTGCATGGCCTTCTTTAAATTTCTTTTGCGTGTAATCTTTCG 1255
Query 1238 T---TTT-GTATTGTTCCAGCTTCTCGCTGTCTATCCATTTGACTCT 1280
| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1256 TACGTTTTGTATTGTTCCAGCTTCTCGCTGTCTATCAATTTGACTCT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65059906320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5