BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475097
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62480.1 | Symbols: | Vacuolar calcium-binding protein-rela... 931 0.0
> AT1G62480.1 | Symbols: | Vacuolar calcium-binding protein-related
| chr1:23128705-23129759 FORWARD LENGTH=764
Length=764
Score = 931 bits (504), Expect = 0.0
Identities = 634/695 (91%), Gaps = 15/695 (2%)
Strand=Plus/Plus
Query 1 TTCACTCACAAAAGCATCACACAACACTCTCACACACACTTTCTCTTCTCTTATTTTCTC 60
||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTCACTCACCAAAGCATCACATAACACTCACACACACACTTTCTCTTCTCTTATTTTCTC 60
Query 61 AGTTCTTTTAACTCCTTTC-C-AC-TA-ATTCAAATGGCCACCGTCGAGGTTGAACAAGT 116
|||||||||||||| |||| | || || ||||||||||||||| ||||||||||||||||
Sbjct 61 AGTTCTTTTAACTCTTTTCTCTACATATATTCAAATGGCCACCATCGAGGTTGAACAAGT 120
Query 117 GACTCCAGTAGCAGGTGAGAACATCGAGGTGCCACCACCAAAGACGGTAGAGTCAGAGGA 176
|||||||||||||| |||||||||||||||||||||||||||| | || ||||| |||||
Sbjct 121 GACTCCAGTAGCAGCTGAGAACATCGAGGTGCCACCACCAAAGGCTGTGGAGTCGGAGGA 180
Query 177 GGTCA-CAGCCGTCTCCGAGTCTCTTCCAGCTCCGGTAACAGAATCTCAAGCGCCTGTCG 235
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTCACCA-CCGTCTCCGAGTCTCTTCCAGCTCCGGTAACAGAATCTCAAGCGCCTGTCG 239
Query 236 AAGTAACAACTAATGACTTGGTCTTGGTAGAAACAGAGAAACCAATCAAAGAAACAGAGG 295
||||||||||||| || |||||| ||| ||| ||||||||||||||| ||||||||||||
Sbjct 240 AAGTAACAACTAAAGATTTGGTCGTGGAAGAGACAGAGAAACCAATCGAAGAAACAGAGG 299
Query 296 AAGCTCTAGTTGACACTCC-GACGGCTGTGGAGATAAAGAAAGATGAAGAAGCTCCAGTT 354
|||||| |||||| ||||| || || ||||||||| |||||||||||||||||||| |||
Sbjct 300 AAGCTCAAGTTGAAACTCCGGA-GGTTGTGGAGATCAAGAAAGATGAAGAAGCTCCGGTT 358
Query 355 GAAACTCCGGTGGTTGTggaggaagagagcaaaacagaggaagttgtagaggccaagaaa 414
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 359 GAAACTCCGGTGGTTGTGGAGGATGAGAGCAAAACAGAGGAAGTTGTAGAGGCGAAGAAA 418
Query 415 gaggaagaagtagaagaaaagaagacagaggaagctccagtggttgtggaggaagagaag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGGAAGAAGTAGAAGAAAAGAAGACAGAGGAAGCTCCAGTGGTTGTGGAGGAAGAGAAG 478
Query 475 aagccagaagCTGAGGAGGAGAAACCTACTGAAGTAGCCGTC-GCCG-CAGCTGCGGTGG 532
|||||||| || |||||||||||||| | | | |||| || | | ||||| | ||||
Sbjct 479 AAGCCAGAGGCAGAGGAGGAGAAACCCGCCGTGGAAGCC-TCCGT-GACAGCTCCAGTGG 536
Query 533 AGAAGGCTGATGAGTAAATTTGAAGGAAAAAACTGTCTTTTGAAAGACAGAAGAAGaaaa 592
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
Sbjct 537 AGAAGGCTGATGAGTAAATGTGAAGAAAAAAACTGTCTTTTGAAAGACAAAAGAAGAAGA 596
Query 593 aaaCGTTAGCAAGTAAACTATTTGTTACTTTTAAGTACTTTGTGTCTTGTTTTGTTGTTG 652
||| |||||||||||| |||||| |||||| ||||||||||||||||||| |||| |||
Sbjct 597 AAATGTTAGCAAGTAATTTATTTGCTACTTT-AAGTACTTTGTGTCTTGTTATGTTTTTG 655
Query 653 AGTCTATGACTCTTCTTGCTTTTG-TATTTTCAAT 686
|||||||||||||||||||||||| | |||| |||
Sbjct 656 AGTCTATGACTCTTCTTGCTTTTGGTTTTTT-AAT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5