BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475098

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62450.1 | Symbols:  | Immunoglobulin E-set superfamily prot...   532    1e-150


> AT1G62450.1 | Symbols:  | Immunoglobulin E-set superfamily protein 
| chr1:23115958-23117370 REVERSE LENGTH=672
Length=672

 Score =  532 bits (288),  Expect = 1e-150
 Identities = 315/327 (96%), Gaps = 5/327 (2%)
 Strand=Plus/Plus

Query  310  GAAATGGCCCTTGGTTTACGATTAAAGGAAGGTTCTAAATACACACTTGTCTTCAACTTC  369
            |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  351  GAAA-GGCCCTTGGTTTACGA-TAAAGGAAGGTTCTAAATACACACTTGTCTTCAACTTC  408

Query  370  CGTGTCACAAACAATATCGTTTCGGGCCTTCGCTATAACAATACCGTATGGAAAACTGGT  429
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  409  CGTGTCACAAACAATATCGTTTCGGGCCTTCGCTATAACAATACCGTGTGGAAAACCGGT  468

Query  430  GTTAAAGCAGTGGATAGTACGAAAGCAATGCTTGGGACGTTTAGTCCTCAAGCTGAGCCT  489
            |||||||   |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  469  GTTAAAG---TGGATAGTACAAAAGCAATGCTTGGGACGTTTAGTCCTCAAGCTGAGTCT  525

Query  490  TACCAACATGTAATGCCTGAAGAAATGACACCGTCTGGTATGTTTGCTAGAGGATCCTAT  549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  526  TACCAACATGTAATGCCTGAAGAAATGACACCGTCTGGTATGTTTGCTAGAGGATCCTAT  585

Query  550  TCCGCAAGAACTAAGTTTGTCGATGACGATAACAAATGCTACTTGGAGATCAACTACACC  609
            |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct  586  TCCGCAAGAACTAAGTTCATCGATGACGATAACAAATGCTACTTGGAGATCAACTACACC  645

Query  610  TTTGACATCCGCAAGAGTTGGCAATGA  636
            || ||||||||||||||||||||||||
Sbjct  646  TTCGACATCCGCAAGAGTTGGCAATGA  672


 Score =  523 bits (283),  Expect = 7e-148
 Identities = 305/316 (97%), Gaps = 0/316 (0%)
 Strand=Plus/Plus

Query  1    ATGGTTTTGGAAGATGAGAAGAAGAAAGGAGAAGCGTCAGGAGAGACATCAGAGAAAATT  60
            ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| 
Sbjct  1    ATGGTTTTGGAAGATGAGATGAAGAAAGGTGAAGCGTCAGGAGAGACATCAGAGAAAATG  60

Query  61   GGGTTAAGCAGAAAGAACAGTGAGAGCTCTTTGTCTCCAACAGAGGATGATGAAGAAGAT  120
            |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct  61   GGGTTAAGCAGAAAGAACAGTGGGAGCTCTTTGTCTCCGACAGAGGATGATGAAGAAGAT  120

Query  121  GATGACAAGAAGCTCGAACTCGGTCCCATGATCGCTCTCAAAGAACAACTCGAAAAAGAC  180
            || |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  121  GAAGACAAGAAGCTCGAACTCGGTCCCATGATCGCTCTCAAAGAACAACTCGAGAGAGAC  180

Query  181  AAGGATGATGAAAGCCTGAGGAGATGGAAGGAACAGCTTCTTGGCGTTGTGGATTTGGAG  240
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  181  AAGGATGATGAAAGCCTGAGGAGATGGAAGGAACAGCTTCTTGGCGTCGTGGATTTGGAG  240

Query  241  GATGTCGGAGAGACACCGGATCCAGTAGTAAAGATACTAGATCTCACAATTAGATCACCG  300
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  GATGTCGGAGAAACACCGGATCCAGTAGTAAAGATACTAGATCTCACAATTAGATCACCA  300

Query  301  GACAGAGAGGAAATGG  316
            ||||||||||||||||
Sbjct  301  GACAGAGAGGAAATGG  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30693063817


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5