BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475099
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62440.1 | Symbols: LRX2 | leucine-rich repeat/extensin 2 | ... 2529 0.0
AT1G12040.1 | Symbols: LRX1 | leucine-rich repeat/extensin 1 | ... 832 0.0
> AT1G62440.1 | Symbols: LRX2 | leucine-rich repeat/extensin 2
| chr1:23111818-23115293 FORWARD LENGTH=2481
Length=2481
Score = 2529 bits (1369), Expect = 0.0
Identities = 1769/1954 (91%), Gaps = 59/1954 (3%)
Strand=Plus/Plus
Query 1 GGAGCTGATGATGATGATGATATAAGCGGTGATGATATCAAAGTCGACCCGAGTCTCAAG 60
|||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 202 GGAGATGATGATGATGATGATATAAGCGATGATAATATCAAAGTCGACCCGAGTCTCAAG 261
Query 61 TTTGAAAACCCGAGTCTTCGACAAGCCTACATTGCTCTTCAATCATGGAAACAAGCTATT 120
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TTCGAAAACCCAAGTCTTCGACAAGCCTACATTGCTCTTCAATCATGGAAACAAGCTATT 321
Query 121 TTCTCTGATCCTTTTAACTTCACTGCTAATTGGAATGGCTCTGATGTTTGTTCCTACAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TTCTCTGATCCTTTTAACTTCACTGCTAATTGGAATGGCTCTGATGTTTGTTCCTACAAC 381
Query 181 GGTATCTTCTGTGCTCCTTCTCCTTCTAGTCCGAAAACTCGAGTTGTTGCGGGTATTGAC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GGTATCTTTTGTGCTCCTTCTCCTTCTAGTCCGAAAACTCGAGTTGTTGCGGGTATTGAC 441
Query 241 CTTAACCATGCGGACATGGCTGGTTATTTACCTCGTGAGCTTGGTCTTCTCACTGATCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CTTAACCATGCGGACATGGCTGGTTATTTACCTCGTGAGCTTGGTCTTCTCACTGATCTT 501
Query 301 GCTCTCTTTCATCTCAACTCAAACCGCTTCTGTGGTGAAGTTCCTATCACCTTTAAAAAC 360
||||||||||||||||||||||||||||| ||||| ||||| ||| |||| |||||| ||
Sbjct 502 GCTCTCTTTCATCTCAACTCAAACCGCTTTTGTGGAGAAGTACCTCTCACGTTTAAACAC 561
Query 361 ATGAAGCTTCTCTTCGAGCTTGATTTAAGTAACAATCGTTTTGTTGGGAAGTTCCCTAAG 420
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 562 ATGAAGCTTCTCTTCGAGCTTGACTTAAGTAACAACCGTTTTGTTGGGAAGTTCCCTAAT 621
Query 421 GTTGTCTTGTCTTTGCCTTCCCTCAAGTTCTTGGATCTTCGGTACAACGAGTTTGAAGGT 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GTTGTCTTGTCTTTACCTTCCCTCAAGTTCTTGGATCTTCGGTACAACGAGTTTGAAGGT 681
Query 481 GGTATCCCTTCGAAGCTATTCGATAAAGAGCTTGACGCAATATTCTTGAATCATAACCGG 540
||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 682 AGTATCCCTTCGAAGCTATTCGATAAAGAGCTCGACGCGATATTCTTAAACCATAACCGG 741
Query 541 TTTCGGTTTGGAATACCCGAAAACATGGGAAACTCTCCGGTTTCTGCTCTTGTTCTTGCG 600
||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 742 TTTATGTTTGGGATACCCGAAAACATGGGAAACTCTCCGGTGTCTGCTCTAGTTCTTGCG 801
Query 601 GATAATGATCTTGGAGGTTGCATTCCGGGAAGTATTGGTTTAATGGGAAAGACTCTTAAC 660
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 802 GATAATGATCTTGGAGGTTGCATACCGGGAAGTATCGGTTTAATGGGAAAGACTCTCAAC 861
Query 661 GAGATCATCCTCTCTAACGATAACTTAACCGGTTGCTTACCACCGCAGATTGGGAATCTC 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 862 GAGATCATCCTCTCTAACGATAACTTAACCGGTTGCTTACCACCACAGATTGGGAATCTC 921
Query 721 AAGAATGTGACGGTTTTCGACGTCAGTTTCAACCGTTTAAGCGGTCCATTGCCGTCAAGC 780
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 922 AAGAATGTGACGGTTTTCGATATCAGTTTCAACCGTTTAAGCGGTCCATTGCCATCAAGC 981
Query 781 ATTGGAAACATGAAGAGCTTGGAACAGCTCAATGTTGCTAACAATAGATTCACAGGAGTT 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 ATTGGAAACATGAAGAGTTTGGAACAGCTCAATGTTGCTAACAATAGATTCACAGGAGTT 1041
Query 841 ATTCCAAGCAGCATTTGTCAGCTCTCTAACCTTGAGAACTTCACTTACTCTTCCAACTTC 900
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1042 ATACCAAGCAGCATTTGTCAGCTCTCTAACCTTGAGAACTTCACTTATTCTTCCAACTTC 1101
Query 901 TTCACTGGTGATGCTCCGAGATGTGCGGCTCTTTCGGGAGACAATGTGGCTG-TTAATGG 959
||||| |||||||| |||||||||| |||||||| |||||||||||||| || |||||||
Sbjct 1102 TTCACCGGTGATGCCCCGAGATGTGTGGCTCTTTTGGGAGACAATGTGG-TGGTTAATGG 1160
Query 960 CTCGATGAATTGTATTGCTGGTAAAGAACG-TCAAAGATCGTCTAAAGAATGTTCTTCTC 1018
||||||||||||||||| |||||||||| | |||||||||||||||||| ||||||||||
Sbjct 1161 CTCGATGAATTGTATTGATGGTAAAGAA-GATCAAAGATCGTCTAAAGAGTGTTCTTCTC 1219
Query 1019 CAGCCTCACGCCCTGTTGATTGTACTAAATTTGGATGCAACAACTTTTTCTCTCCACCAC 1078
||||||||||| |||||||||||| ||| ||||| || ||||||||||||||||| ||||
Sbjct 1220 CAGCCTCACGCTCTGTTGATTGTAGTAAGTTTGGGTGTAACAACTTTTTCTCTCCTCCAC 1279
Query 1079 CACCGTCTTTTAAGATGTCACCCACCGTCCGAGTACTTCCTCCACCCCCTCCGTCTTCCA 1138
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1280 CACCGTCTTTTAAGATGTCACCCACCGTTCGAGTACTTCCTCCACCGCCTCCGTCTTCCA 1339
Query 1139 AGATGTCGCCTACATTTAGAGCAACTCCACCACCGCCTTCTTCTAAGATGTCGCC-TACT 1197
|||||||||||||||||||||||||||| |||||||| |||||||||||||| || | ||
Sbjct 1340 AGATGTCGCCTACATTTAGAGCAACTCCGCCACCGCCGTCTTCTAAGATGTCACCAT-CT 1398
Query 1198 TTTAGAGCAACTCCGCCACCGCCTTCTTCTAAGATGTCGCCTACTTTTAGAGCAACTCCG 1257
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1399 TTTAGAGCAACTCCGCCACCGCCTTCTTCTAAAATGTCGCCTTCTTTTAGAGCAACTCCG 1458
Query 1258 CCACCGCCTTCTTCCAAGATGTCGCCTTCCGTCAAGGCCTATCCTCCTCCCCCGCCACCG 1317
||||| |||||||| ||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1459 CCACCACCTTCTTCTAAGATGTCGCCTTCCGTCAAGGCGTATCCTCCTCCTCCACCACCG 1518
Query 1318 CCAAAGTATGAGCCATCTCCACCTCCTCCTTCTTCCGGAATGTCACCTTCCGTTAGAGCA 1377
||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| |||
Sbjct 1519 CCAGAGTATGAGCCATCTCCGCCTCCTCCTTCTTCCGAAATGTCACCTTCCGTTAGGGCA 1578
Query 1378 TACCCTCCACCAccacca-t--c-------------tc-c-tcctccaccatacatctac 1419
|||||||||||||||||| | | || | |||||||||||||||||||
Sbjct 1579 TACCCTCCACCACCACCACTATCACCACCACCACCATCTCCTCCTCCACCATACATCTAC 1638
Query 1420 tcatctcctcctctgccgtcaccatctcctcctccCCCATACATCTACTCATCTCCTCCA 1479
||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1639 TCATCTCCTCCACCACCGTCACCATCTCCTCCTCCGCCATACATTTACTCATCTCCTCC- 1697
Query 1480 CCACCTCCGCCCGTAGTTAACTGTCCACCCACAACACAAAGTCCCCCACCGCCACCACCT 1539
|||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1698 --------GCCCGTAGTTAACTGTCCACCCACAACACAAAGTCCCCCACCTCCG--A--- 1744
Query 1540 CCAATATATGAGCAACCCCCTTCACCAAGGGAATACTATCCATCACCTTCACCACCTTAC 1599
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 --AATAT--GAGCAAACTCCTTCACCAAGGGAATACTATCCATCACCTTCACCACCTTAC 1800
Query 1600 TACCAACACACATCTTCAAGGCCACCGCCTACTTACTACAGCCGCTCAATCTCCACCGGC 1659
|||||| |||| ||||| ||||||||||||||||||| ||| |||||||||||||| |
Sbjct 1801 TACCAATACACGTCTTCTCCGCCACCGCCTACTTACTAC-GCCACTCAATCTCCACCGCC 1859
Query 1660 AACCGCCACCGGTCTACTATAG-AC-CGGTTACACAATCTTCTCCTCCTTCACC---GTT 1714
| || |||||| ||||| || || | ||| || | ||| | || || |||| | |
Sbjct 1860 A-CCACCACCGC-CTACT-TACTACGCTGTT-CA-A-TCTCCCCCGCCACCACCACCGGT 1913
Query 1715 TTACTATTCACCTATTACT-CAAATCCACCACCACCACCGGTCTACTATCCACCAGTTAC 1773
||||| ||||| | || ||| ||| || |||||||||||||||||| |||| ||||
Sbjct 1914 ATACTACCCACCTGTAACAGCAAGTCCTCCTCCACCACCGGTCTACTATACACCGGTTAT 1973
Query 1774 ACAAAGTCCACTTCCCCCACCAGTTTATTATCCTCCGGTAACACAAAGCCCTCCACCACC 1833
|||| ||| | ||| ||||| ||||| ||| | || || || ||||| |||||||||||
Sbjct 1974 ACAATCTCCTCCTCCTCCACCGGTTTACTATTCACCTGTTACCCAAAGTCCTCCACCACC 2033
Query 1834 ACCACCAGTCTACTATCCACCGGTAACACAAAGCCCTCCACCGCCAGCACCGGTCTACTA 1893
|||||| || |||||||| |||||||||||||| |||||| ||| |||||||||||||
Sbjct 2034 ACCACCGGTTTACTATCCCCCGGTAACACAAAG---TCCACCACCATCACCGGTCTACTA 2090
Query 1894 TCCACC-GTAACACAAAGCCCACCTccaccgcca 1926
||| || || || ||||| |||||||| || |||
Sbjct 2091 TCCGCCAGTTACCCAAAGTCCACCTCCCCCACCA 2124
Score = 564 bits (305), Expect = 1e-159
Identities = 435/495 (88%), Gaps = 20/495 (4%)
Strand=Plus/Plus
Query 1665 CCACCGGTCTACTATAGACCGGTTACAC-AA-T-CTTCTCCTCCTTCACCGTTTTACTAT 1721
|||||||| |||||| ||| ||||| | || | || | || || ||||| ||||||||
Sbjct 1990 CCACCGGTTTACTATTCACCTGTTACCCAAAGTCCTCCACCACCACCACCGGTTTACTAT 2049
Query 1722 TCACCTATTACTCAAA-TCCACCACCACCACCGGTCTACTATCCACCAGTTACACAAAGT 1780
| || | || |||| |||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 2050 CCCCCGGTAACACAAAGTCCACCACCATCACCGGTCTACTATCCGCCAGTTACCCAAAGT 2109
Query 1781 CCACTTCCCCCACCAGTTTATTATCCTCCGGTAACACAAAGCCCTCCACCACCACCACCA 1840
|||| |||||||||||||||||||| ||| ||||| |||||||||||||| ||| |||||
Sbjct 2110 CCACCTCCCCCACCAGTTTATTATCTTCCAGTAACTCAAAGCCCTCCACCGCCATCACCA 2169
Query 1841 GTCTACTATCCACCGGTAACACAAAGCCCTCCACCGCCAGCACCGGTCTACTATCCACC- 1899
|||||||||||||||||| || ||||||||||||| ||| |||| ||||||||||||||
Sbjct 2170 GTCTACTATCCACCGGTAGCAAAAAGCCCTCCACCACCATCACCAGTCTACTATCCACCG 2229
Query 1900 GTAACACAAAGCCCACCTccaccgccaccaccagttgagtaccatccaccggcaagccca 1959
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2230 GTAACACAAAGCCCACCTCCACCGTCAACACCAGTTGAGTACCATCCACCGGCAAGCCCA 2289
Query 1960 aaccagtctccaccaccaccGGAGTATCAATCACCACCACAAAAGGGATGCAACG--A-- 2015
||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2290 AACCAGTCT---CCACCACCGGAGTATCAATCACCACCACCAAAGGGATGCAACGACAGT 2346
Query 2016 -C-AGT------CATCACTACCAAACACCAACACCACCTTCTCCGCCGCCTCCATCCTAC 2067
| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2347 CCAAGTAACGACCATCACTACCAAACACCAACACCACCTTCTCTGCCGCCTCCATATTAC 2406
Query 2068 GACGACACACCTCTTCCGCCGATCCGCGGTGTCTCTTATGCGTCCCCTCCTCCACCATCA 2127
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2407 GAAGACACACCTCTTCCGCCTATCCGCGGTGTCTCTTATGCGTCTCCTCCTCCACCATCA 2466
Query 2128 ATCCCATACTACTAA 2142
|||||||||||||||
Sbjct 2467 ATCCCATACTACTAA 2481
Score = 178 bits (96), Expect = 2e-43
Identities = 152/178 (85%), Gaps = 8/178 (4%)
Strand=Plus/Plus
Query 1115 TTC-CTCCACCCCCTCCGTCTTCCAAGATGTCGCCTACATTTAGAGCAAC-TCCACCACC 1172
||| |||| || || ||||||| |||||||| || || || ||| || ||| |||||
Sbjct 1267 TTCTCTCCTCCACCACCGTCTTTTAAGATGTCACCCACCGTTCGAG-TACTTCCTCCACC 1325
Query 1173 GCCT---TCTTCTAAGATGTCGCCTACTTTTAGAGCAACTCCGCCACCGCCTTCTTCTAA 1229
|||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1326 GCCTCCGTCTTCCAAGATGTCGCCTACATTTAGAGCAACTCCGCCACCGCCGTCTTCTAA 1385
Query 1230 GATGTCGCCTA-CTTTTAGAGCAACTCCGCCACCGCCTTCTTCCAAGATGTCGCCTTC 1286
|||||| || | ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1386 GATGTCACC-ATCTTTTAGAGCAACTCCGCCACCGCCTTCTTCTAAAATGTCGCCTTC 1442
Score = 159 bits (86), Expect = 8e-38
Identities = 185/232 (80%), Gaps = 9/232 (4%)
Strand=Plus/Plus
Query 1661 ACCGCCACCGGTCTACTATAGACCGGTTACACAATCTTCTCCTCCTTCACCGTTTTACTA 1720
||| |||||||| |||||| ||||| |||||| | | || || |||||| | |||||
Sbjct 2031 ACCACCACCGGTTTACTATCCCCCGGTAACACAAAGTCCACCACCATCACCGGTCTACTA 2090
Query 1721 TTCACCTA-TTACTCAAA-TCCACCACCACCACCGGTCTACTATCCACCAGTTACACAAA 1778
| | || | |||| |||| |||||| || ||||| || || |||| ||||| || ||||
Sbjct 2091 TCCGCC-AGTTACCCAAAGTCCACCTCCCCCACCAGTTTATTATCTTCCAGTAACTCAAA 2149
Query 1779 G---TCCACTTCCCCCACCAGTTTATTATCCTCCGGTAACACAAAGCCCTCCACCACCAC 1835
| ||||| || ||||||| || ||||| |||||| || |||||||||||||||||
Sbjct 2150 GCCCTCCACCGCCATCACCAGTCTACTATCCACCGGTAGCAAAAAGCCCTCCACCACCAT 2209
Query 1836 CACCAGTCTACTATCCACCGGTAACACAAAGCCC---TCCACCGCCAGCACC 1884
|||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 2210 CACCAGTCTACTATCCACCGGTAACACAAAGCCCACCTCCACCGTCAACACC 2261
Score = 80.5 bits (43), Expect = 6e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1439 caccatctcctcctccCCCATACATCTACTCATCTCCTCCACCACC 1484
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1610 CACCATCTCCTCCTCCACCATACATCTACTCATCTCCTCCACCACC 1655
> AT1G12040.1 | Symbols: LRX1 | leucine-rich repeat/extensin 1
| chr1:4070124-4072567 FORWARD LENGTH=2444
Length=2444
Score = 832 bits (450), Expect = 0.0
Identities = 902/1116 (81%), Gaps = 48/1116 (4%)
Strand=Plus/Plus
Query 33 TGATATCAAAGTCGACCCGA-GTCTCAAGTTTGAAAACCCG-AGTCTTCGACAAGCCTAC 90
|||||||||||| || | | |||||||||| || |||||| || || || |||||||||
Sbjct 144 TGATATCAAAGTAGA-CAAACGTCTCAAGTTCGAGAACCCGAAG-CTACGTCAAGCCTAC 201
Query 91 ATTGCTCTTCAATCATGGAAACAAGCTAT-TTTCTCTGATCCTTTTAACTTCACTGCTAA 149
||||||||||||||||||||| |||| || ||| ||||||||||| |||||||| |||||
Sbjct 202 ATTGCTCTTCAATCATGGAAAAAAGCAATCTTT-TCTGATCCTTTCAACTTCACAGCTAA 260
Query 150 TTGGAATGGCTCTGATGTTTGTTCCTACAACGGTATCT-TCTGTGCTCCTTCTCCTTC-T 207
||||||||| || |||||||| |||||||| || |||| | ||||||||||||||||| |
Sbjct 261 TTGGAATGGTTCAGATGTTTGCTCCTACAATGGAATCTAT-TGTGCTCCTTCTCCTTCAT 319
Query 208 AGTCCGAAAACTCGAGTTGTTGCGGGTATTGACCTTAACCATGCGGACATGGCTGGTTAT 267
| |||||||| ||||| ||||| || |||||||| ||||| || |||||||| |||||
Sbjct 320 AC-CCGAAAACCCGAGTCGTTGCTGGCATTGACCTCAACCACGCTGACATGGCCGGTTAC 378
Query 268 TTACCT-CGTGAGCTTGGTCTTCTCACTGATCTTGCTCTCTTTCATC-TCAACTCAAACC 325
|| || | ||||| ||||| ||| ||||||| ||||| || || | | ||||||||||
Sbjct 379 TTGGCTTCC-GAGCTAGGTCTCCTCTCTGATCTCGCTCTGTTCCA-CATTAACTCAAACC 436
Query 326 GCTTCTGTGGTGAAGTTCCTATCACCTTTAAAAACATGAAGCTTCTCTTCGAGCTTGAT- 384
| ||||| |||||||| ||| |||| ||||| |||||||||||||| ||||||||||
Sbjct 437 GTTTCTGCGGTGAAGTCCCTCTCACGTTTAACCGCATGAAGCTTCTCTACGAGCTTGATC 496
Query 385 TTAAGTAACAATCGTTTTGTTGGGAAGTTCCCTAAGGTTGTCTTGTCTTTGCCTTCCCTC 444
||| | ||||| || || || || |||||||||||||||||| | ||||||||||||||
Sbjct 497 TTA-GCAACAACCGATTCGTCGGTAAGTTCCCTAAGGTTGTCCTCTCTTTGCCTTCCCTT 555
Query 445 AAGTTCTTGGATCTTCGGTACAACGAGTTTGAAGGTG-GTATCCCTTCGAAGCTATTCGA 503
|| ||||||||||| || ||||||||||||||||| | ||||| || ||||| |||||
Sbjct 556 AAATTCTTGGATCTCCGCTACAACGAGTTTGAAGGCAAG-ATCCCATCAAAGCTCTTCGA 614
Query 504 TAAAGAGCTTGACGCAATATTCTTGAATCATAACCGGTTTCGGTTTGGAATACCCGAAAA 563
|| |||||||||||| ||||||||||| ||||||||||| ||||| || || ||| ||||
Sbjct 615 TAGAGAGCTTGACGCTATATTCTTGAACCATAACCGGTTCCGGTTCGGGATTCCCAAAAA 674
Query 564 CATGGGAAACTCTCCGGTTTCTGCTCTTGTTCTTGCGGATAATGATCTTGGAGGTTGCAT 623
||||||||| || || ||||||||||| ||||||||||| || |||| ||||| |||||
Sbjct 675 CATGGGAAATTCCCCTGTTTCTGCTCTGGTTCTTGCGGACAACAATCTCGGAGGATGCAT 734
Query 624 TCCGGGAAGTATTGGTTTAATGGG-AAAGACTCTTAACGAGATCATCCTCTCTAACGATA 682
||||||||||| ||| |||||| ||| || || |||||| | |||||||| ||||| |
Sbjct 735 ACCGGGAAGTATCGGTCAAATGGGGAAA-ACACTCAACGAGCTTATCCTCTCCAACGACA 793
Query 683 ACTTAACCGGTTGCTTACCACCGCAGATTGGGAATCTCAAGAATGTGACGGTTTTCGACG 742
||||||||||||| ||||| || ||||| || || |||||||| |||||||||||||||
Sbjct 794 ACTTAACCGGTTGTTTACCTCCTCAGATCGGAAACCTCAAGAAAGTGACGGTTTTCGACA 853
Query 743 TCAGTTTCAA-CCGTTTA-AGCGGTCCATTGCCGTCAAGCATTGGAAACATGAAGAGCTT 800
||| || ||| |||| || | ||||| || || || ||| |||| |||||||||||| |
Sbjct 854 TCACTT-CAAACCGTCTACAA-GGTCCGTTACCATCTAGCGTTGGTAACATGAAGAGCCT 911
Query 801 GGAACAGCT-CAATGTTGCTAACAATAGA-TTCACAGGAGTTATTCCAAGCA-GCATTTG 857
||| |||| || || ||||||||| | ||||||||||||||||| || | || ||
Sbjct 912 AGAAGAGCTTCAC-GTGGCTAACAAT-GCCTTCACAGGAGTTATTCCTC-CAAGTATCTG 968
Query 858 TCAGCTCTCTAACCTTGAGAACTTCACTTACTCTTCCAACTTCTTCACTGGT-GATGCTC 916
||||| ||||||||||||||||| |||||||||||||||| |||| | ||| | | |||
Sbjct 969 CCAGCTTTCTAACCTTGAGAACTTTACTTACTCTTCCAACTACTTCTCCGGTCG-TCCTC 1027
Query 917 CGAGATGTGCGGCTC-TTTCGGGAGAC-A-AT-GTGGCTGTTAATGGCT-CGATGAATTG 971
| | ||| || ||| ||| | || | | || |||| || || || | | ||||| ||
Sbjct 1028 CTATATGCGCAGCTAGTTT-GTTAGCCGACATTGTGG-TG--AACGG-TACCATGAACTG 1082
Query 972 TATTGCTGGTAAAGAACGTCAAAGATCGTCTAAAGAATGTTCTTCTCCAGCCT-CACGCC 1030
|| | ||| | |||||||||||| |||| | || || ||| || | | ||||
Sbjct 1083 CATCACCGGTTTGGCTCGTCAAAGATCGGATAAACAGTGCTCATCTTT-GCTTGCTCGCC 1141
Query 1031 CTGTTGATTGTACTAAATTTGGATGCAACAACTTTTTCTCTCCACCACCACCGTCTTTTA 1090
|||| ||||| | ||| |||||||| ||||| | |||||||||||||||||| | ||||
Sbjct 1142 CTGTGGATTGCAGTAAGTTTGGATGTTACAACATCTTCTCTCCACCACCACCGACGTTTA 1201
Query 1091 AGATGTCACCC-ACCGTCCG-AGTACTTCCTCCACC 1124
|||||||||| | ||||| | ||||||||||||
Sbjct 1202 AGATGTCACCTGAA-GTCCGGAC-ACTTCCTCCACC 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5