BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475101
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62420.1 | Symbols: | Protein of unknown function (DUF506) ... 1254 0.0
> AT1G62420.1 | Symbols: | Protein of unknown function (DUF506)
| chr1:23102793-23104647 REVERSE LENGTH=1039
Length=1039
Score = 1254 bits (679), Expect = 0.0
Identities = 825/896 (92%), Gaps = 8/896 (1%)
Strand=Plus/Plus
Query 1 AAAAAGATTTTATCAAAAGGAC-AAAGAAAGAGATGGTTGAGATCCAGGCAAGATTCAAG 59
|||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 11 AAAAAGATTTTATCAAAAGGACAAAAGAAAGAGATGGTTGAGATTCAGGGAAGATTCAAA 70
Query 60 AGAGTTGAGTCGGCTTTCAACGTAGCGGCGGCGCGTGTACGTCCGA-CGTGTGATAATAG 118
||| |||||||||||||||||||||| ||||| ||||||| ||| | |||||||||| ||
Sbjct 71 AGAATTGAGTCGGCTTTCAACGTAGCCGCGGCTCGTGTACATCC-ACCGTGTGATAACAG 129
Query 119 TAGCGGAAGCGATCATTCGCCGGATCTTTCGGATTTGGTCGCATCTTTTATGGAGAAAGA 178
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 130 TAGCGGAAGCGATCATTCGCCGGATCTTTCCGATTTGGTCGCATCTTTTATAGAGAAAGA 189
Query 179 AGGACAAATAGTATTACGTGAGGAAGAAGAAACTTCTTCCGACGATAATGATTTGGAAGA 238
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 190 GGGACAAATAGTATTACGTGAAGAAGAAGAAACTTCTTCCGACGATAACAATTTGGAAGA 249
Query 239 TGTGAAGGAGAGGTTACGGAAGCTTTTAGAAGGTTTGTCCGGCGGCGAAGAGCGGAGGAG 298
|||||| |||||||||||||||||| |||||||||| ||| | ||||||||||||| |||
Sbjct 250 TGTGAATGAGAGGTTACGGAAGCTTCTAGAAGGTTTATCCTGTGGCGAAGAGCGGATGAG 309
Query 299 AGTAATGACGGCTATGATGGAGGTTGCTGGAACGTTCGTCGGAGATATTAGTTCTCCTAA 358
| || || | || | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 310 AATACTGTCAGCGACGATGGAGGTTGCTGGAACGTTCGTCGGAGATATTAGTTCTTCTAA 369
Query 359 GCGTCAATTGATGGTGTTTCTACGTAACAAGGGTTTTGATGCAGGTCTTTGCAAGTCAAG 418
|||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 370 GCGTCACTTAATGGCGTTTCTACGTAACAAGGGTTTTGATGCAGGTCTTTGCAAGTCGAG 429
Query 419 TTGGGAGAGATTCGGCAAGAACACCGGCGGAAAATACGAGTACGTCGACATTCGATGCGG 478
|||||| ||||||||||| |||||||||||||||||||||||||||||| |||| || ||
Sbjct 430 TTGGGAAAGATTCGGCAAAAACACCGGCGGAAAATACGAGTACGTCGACGTTCGTTGTGG 489
Query 479 CGGAG---ATCATAATCGGT-TTATCGTGGAGACAAACCTAGCCGGAGAATTTGAGATAG 534
||||| || ||||||||| || |||| ||||||||||| |||||||| ||||||||||
Sbjct 490 CGGAGATTATAATAATCGGTATT-TCGTCGAGACAAACCTTGCCGGAGAGTTTGAGATAG 548
Query 535 CTCGACCAACGAAAAGGTACCTTTCAATACTAAACCAAGTACCACATGTCTTCGTGGGGA 594
|| ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||| |
Sbjct 549 CTAGACCAACGAAAAGGTACCTCTCAATACTAAGCCAAGTGCCACGCGTCTTCGTGGGAA 608
Query 595 CTTCGGAGGAGCTGAAACTGCTTGTGAGGATCATGTGCCACGAGATGAGACGGTCGATGA 654
|||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 609 CTTCAGAGGAACTGAAACTGCTCGTGAGAATCATGTGCCATGAGATGAGACGGTCGATGA 668
Query 655 AGCACGTAGGTATGCACGTGCCACCGTGGAGGAGAAACGGTTACATGCAAGCTAAGTGGT 714
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AGCACGTAGGGATCCACGTGCCACCGTGGAGGAGAAACGGTTACATGCAAGCTAAGTGGT 728
Query 715 TCGGTTTTTATAAACGAACTTCGACGACGAATAATTACGACATGGTTAATACTTATGATA 774
||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 729 TCGGTTTCTATAAACGAACTTCGACGACCAATAACTACGAAATGGTTAATACTTATGATA 788
Query 775 CGACGGCGTTTAAGGGTTGCAAGGAAGAGTTTTGGGAAGCAAAAGGTCTTAAGGTTATGG 834
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 789 CGACTGCGTTTAAGGGTTGCAAGGAAGAGTTTTGGGAAGCTAAAGGTCTTAAGGTTATGG 848
Query 835 TTGGTCAGCTTTCGGTTGCTTTCAACGTTAGTGGGGTTGAAGTGTAATAATAATCA 890
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 849 TTGGTCAGCTTTCGATTGCTTTCAACATTAGTGCGGTTGAAGTGTAATAATAATCA 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5