BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475102
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62422.1 | Symbols: | unknown protein; EXPRESSED IN: 22 pla... 955 0.0
> AT1G62422.1 | Symbols: | unknown protein; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G12020.1);
Has 87 Blast hits to 86 proteins in 14 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:23100139-23101033 REVERSE LENGTH=895
Length=895
Score = 955 bits (517), Expect = 0.0
Identities = 620/668 (93%), Gaps = 14/668 (2%)
Strand=Plus/Plus
Query 1 CTCATCAAACTCATTCCTCAAGAAAGAct--ctctc---tctctctctATGAAGAAGCTC 55
|||||||||||||||| |||||||||||| ||||| |||||||||||||| |||||
Sbjct 1 CTCATCAAACTCATTCTTCAAGAAAGACTCACTCTCTTTTCTCTCTCTATGAAAAAGCTT 60
Query 56 TGCCGGAAAGGAACCGTTCATCCGTCGCCGGCGCCGGCGATAAAGACCGACGACCAGTTT 115
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 61 TGCCGGAAAGGAACCGTTCATCCGTCGCCACCGCCGGCGATAAAGACCGACGAACAGTTT 120
Query 116 CTCTCTCTCCTCCCCGTGGCTATCCTCTCTCTTGTGGCGGCGCTTTCGGCT-GAAGACCG 174
|| ||||| |||||||| |||||||||||||| ||||||||||| |||| | || || ||
Sbjct 121 CTATCTCTTCTCCCCGTAGCTATCCTCTCTCTCGTGGCGGCGCTCTCGG-TGGAGGATCG 179
Query 175 TGAAGTTCTTGCTTACCTCATCTCAAACTCCGGCGACTCAAATCGTTTCTCTCACCTCAA 234
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 180 TGAAGTTCTTGCTTACCTCATCTCAAACTCCGGCGACTCAAATCGTATCTCTCGTCTCAA 239
Query 235 GAAAAACAAAGAAGATAATCATCACTCTCCTCT-TTTCGTCTGTGATTGTTTTAGTTGCT 293
||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |
Sbjct 240 GAAAAACAAAGAAGATAATCATCACTCTCCTCTCTTTC-TTTGTGATTGTTTTAGTTGTT 298
Query 294 ACACGAGTTACTGGGTCAGATGGGACTCGTCACCGAGTCGCCAACTCATTCACGAGATCA 353
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 299 ACACGAGTTACTGGGTCAGATGGGACACGTCACCGAGGCGCCAACTCATTCACGAGATCA 358
Query 354 TCGACGCCTT-CGAAGATAGTTTGGAGATGAAGAAGAGGAAGAAAGATCGGAGAAAACGA 412
|||| | ||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 359 TCGATG-CTTACGAAGATAGTTTGGAGATGAAGAAGAAAAAGAAAGATCGGAGAAAGCGA 417
Query 413 TCGGGAAAAGCTTCTGTACGAGTTGACTCGGTTGGACCGAGTCGACTCAGTGAGTTGGGT 472
|||||||||||||||| ||||||| ||||| | ||| |||||||||||||||| ||||||
Sbjct 418 TCGGGAAAAGCTTCTGGACGAGTTAACTCGATAGGAACGAGTCGACTCAGTGAATTGGGT 477
Query 473 TCGAGTTCGA-CCGAGTTTGTTGGTGGTGACTCGGGGAAAGATGGAAATTGCGGTGGTGA 531
|||||||| | ||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 478 TCGAGTTC-AGCCGAGTTTGCTGGTGGTGACTCGGAGAAAGATGGAAATTGCGGCGGTGA 536
Query 532 AGAGGCGGAGAAGGAGAAAGGCTCCGTTGGAAAGGTTTTGAGTTTCATTGGTCAGAGATT 591
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 537 AGAGGCGGAGAAGGAGAAAGGCTCCGTTGGAAAGGTTATGAGTTTCATTGGTCAGAGATT 596
Query 592 TTTGGGAGTTTGGGGATAAGGAAATTTCCAAACATTTTGGTGGAAAAAATGATGaaattt 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTTGGGAGTTTGGGGATAAGGAAATTTCCAAACATTTTGGTGGAAAAAATGATGAAATTT 656
Query 652 ac-aaaaa 658
|| |||||
Sbjct 657 ACTAAAAA 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5