BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475103
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62400.1 | Symbols: HT1 | Protein kinase superfamily protein... 1714 0.0
> AT1G62400.1 | Symbols: HT1 | Protein kinase superfamily protein
| chr1:23090243-23091589 FORWARD LENGTH=1098
Length=1098
Score = 1714 bits (928), Expect = 0.0
Identities = 1004/1042 (96%), Gaps = 0/1042 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAAGAGATTCGACAGTGTGGAATCTTGGTCGATGATCCTTGAGTCCGAGAAC 60
||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGAAGAAGAGATTTGACAGTATGGAATCTTGGTCGATGATCCTCGAGTCCGAGAAC 60
Query 61 GTGGAGACATGGGAAGCGTCTAAAGGAGAAAGAGAGGAATGGACCGCAGATCTTTCGCAG 120
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTGGAGACATGGGAAGCTTCTAAAGGCGAAAGAGAGGAATGGACCGCAGATCTTTCGCAG 120
Query 121 CTATTTATCGGAAACAAATTTGCTTCCGGAGCACACTCTCGAATTTACAGAGGGATCTAC 180
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 121 CTATTTATCGGAAACAAATTTGCTTCCGGAGCACACTCTAGAATATACAGAGGGATCTAC 180
Query 181 AAACAAAGAGCCGTTGCCGTGAAGATGGTGAGGATCCCAACACACAAGGAAGAGACAAGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACAAAGAGCCGTTGCCGTGAAGATGGTGAGGATCCCAACACACAAGGAAGAGACAAGG 240
Query 241 GCTAAGCTCGAACAACAGTTTAAGTCCGAGGTTGCTCTGCTTTCTCGTCTCTTTCACCCT 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTAAGCTTGAACAACAGTTTAAGTCCGAGGTTGCTCTGCTTTCTCGTCTCTTTCACCCT 300
Query 301 AACATCGTTCAGTTCATTGCGGCGTGCAAGAAACCGCCCGTATACTGCATCATAACAGAG 360
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 301 AACATCGTTCAGTTCATTGCGGCGTGCAAGAAACCGCCGGTGTACTGCATTATAACAGAG 360
Query 361 TACATGTCACAAGGAAATCTCCGAATGTACCTAAACAAGAAAGAGCCTTACTCGCTCTCT 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TACATGTCACAAGGAAACCTCCGAATGTACCTAAACAAGAAAGAGCCTTACTCGCTTTCG 420
Query 421 ATCGAGACCGTACTTAGACTGGCTCTAGACATCTCAAGAGGAATGGAGTATCTTCACTCG 480
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCGAGACCGTACTAAGGCTGGCTCTAGACATCTCAAGAGGAATGGAGTATCTTCACTCG 480
Query 481 CAGGGTGTTATCCACAGAGACCTAAAGTCCAACAATTTGCTTTTGAATGATGAGATGAGA 540
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 481 CAAGGTGTTATCCACAGAGACCTAAAGTCCAACAATTTGCTTTTGAACGACGAGATGAGA 540
Query 541 GTTAAAGTTGCAGACTTTGGGACTTCTTGTCTTGAGACGCAATGCAGAGAGGCCAAGGGT 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTAAAGTTGCAGACTTTGGGACATCTTGTCTTGAGACGCAATGCAGAGAGGCCAAGGGT 600
Query 601 AACATGGGAACTTATAGATGGATGGCTCCAGAGATGATCAAAGAGAAGCCTTATACTAGA 660
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 601 AACATGGGAACTTATAGATGGATGGCTCCAGAGATGATCAAGGAGAAGCCTTATACCAGA 660
Query 661 AAAGTCGATGTTTATAGCTTTGGCATCGTTCTATGGGAACTTACCACTGCGTTGCTACCG 720
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 661 AAAGTCGATGTTTATAGCTTTGGCATCGTTCTATGGGAACTCACCACCGCGTTGCTTCCG 720
Query 721 TTCCAAGGCATGACTCCCGTGCAAGCCGCATTCGCAGTCGCTGAAAAGAACGAGAGACCA 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 TTCCAAGGCATGACTCCTGTGCAAGCCGCATTCGCAGTCGCTGAAAAGAACGAAAGACCA 780
Query 781 CCATTGCCGGCGAGCTGTCAACCCGCGCTAGCTCACCTAATCAAGAGATGTTGGTCAGAG 840
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 781 CCATTGCCGGCGAGCTGTCAACCAGCGCTAGCTCATCTAATCAAGAGGTGTTGGTCAGAG 840
Query 841 AATCCGTCGAAGCGGCCAGACTTCTCAAATATAGTGGCTGTGCTAGAGAAGTACGACGAG 900
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 841 AATCCGTCGAAGCGGCCAGACTTCTCAAACATAGTGGCGGTGCTAGAGAAGTACGACGAG 900
Query 901 TGTGTCAAAGAAGGACTGCCTTTGACGTCACACGCAAGCCTAACGAAGACAAAGAACGCG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 TGTGTCAAAGAAGGACTGCCTTTGACGTCACACGCAAGCCTAACGAAGACAAAGAAAGCT 960
Query 961 ATTCTTGATCGCCTTAAAGGCTGTGTCTCATCCATAAGCTCACCATTTTCTTCATCCTCT 1020
|||||||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 961 ATTCTTGATCACCTTAAAGGCTGTGTCACATCCATTAGCTCACCATTTTCTTCCTCCTCT 1020
Query 1021 GTTCCTGTAAATGCCTAGTAGT 1042
||||||||||||||||||||||
Sbjct 1021 GTTCCTGTAAATGCCTAGTAGT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5