BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475104
Length=2585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62390.1 | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1)... 3976 0.0
> AT1G62390.1 | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat (TPR)-containing
protein | chr1:23084293-23087127 REVERSE LENGTH=2835
Length=2835
Score = 3976 bits (2153), Expect = 0.0
Identities = 2395/2509 (95%), Gaps = 27/2509 (1%)
Strand=Plus/Plus
Query 1 GAGCTAGGGTTTCTAGTTTTTCAAAACCCCGTCAGGCTCATCTTCTTCTAGCACCTTCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGCTAGGGTTTCTAGTTTTTCAAAACCCCGTCAGGCTCATCTTCTTCTAGCACCTTCTT 60
Query 61 CTTCCCTTAAAGTATTCAACTTTATCTGAATTTCACCATTTTCTCTTCATTTCT-C--CT 117
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 61 CTTCCCTTAAAGTATTCAACTTTATCTGAATTTGACCATTTTCTCTTCATTTCTCCGACT 120
Query 118 -A-----C-TAATTTCGATCTTTAAGCATCTGGGTATCTCCCTTTCTCCATCTATTCATC 170
| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTTCCCTTCATTTCGATCTTTAAGCATCTGGGTATCTCCCTTTCTCCATCTATTCATC 180
Query 171 GGAATTTGGGCTTAGATTTCGAA-ATTCTGAAGC-TTTTTGGGGA-AGACGAGATTGAAA 227
|||||||| |||||||||| ||| ||| |||||| ||||| |||| ||| ||||||||||
Sbjct 181 GGAATTTGCGCTTAGATTTTGAATATTTTGAAGCTTTTTTTGGGATAGAGGAGATTGAAA 240
Query 228 ATGGGGAAATCTGGAGGAAGGAAGAAGAAGAGTGGTGGTGGTGGTTCGAATGCGAATTCG 287
||||||||||||||||||||||||||||||| ||||||| | | ||||||||
Sbjct 241 ATGGGGAAATCTGGAGGAAGGAAGAAGAAGA------GTGGTGG-T----T-CGAATTCG 288
Query 288 AATTCGAGTCAAGTCAATTCATCTGAAGCTTCAGGATTATCGAAACCGTCAACGATTGTT 347
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 289 AATTCGAGTCAAGTCAATTCATCTGAAACTTCAGGATTATCCAAACCGTCAACGATTGTT 348
Query 348 AATGGTGGTGTTGATTTCGATGCTTCGATATTCTTGAAACGTGCACATGAGCTTAAGGAA 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AATGGTGGTGTTGATTTCGATGCTTCGATATTCTTGAAACGTGCACATGAGCTTAAGGAA 408
Query 408 GAAGGTAATAAAAAGTTTCAAGCAAGAGATTATATTGGTGCTCTTGAGCAATACGAGAAT 467
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 409 GAAGGTAATAAAAAGTTTCAAGCAAGAGATTACGTTGGTGCTCTTGAACAATACGAGAAT 468
Query 468 GGGATTAAGCTTATTCCTAAGAATCATCCAGATAGAGCTGTGTTTCATAGCAATAGAGCT 527
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 469 GGTATTAAGCTTATTCCTAAGAGTCATCCAGATAGAGCTGTGTTTCATAGCAATAGAGCT 528
Query 528 GCTTGTTTGATGCAAATGAAGCCAATTGATTATGAATCTGTGATTTCTGAATGTTCTTTG 587
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 529 GCTTGTTTGATGCAGATGAAACCAATTGATTATGAATCTGTGATTTCTGAATGTTCAATG 588
Query 588 GCTCTTAAATCTCAGCCTGGTTTTACTAGAGCTTTACTTAGAAGAGCTAGAGCTTTTGAA 647
||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 589 GCTCTTAAATCTCAGCCTGGTTTTACTCGTGCTTTGCTTAGAAGAGCTAGAGCTTTTGAA 648
Query 648 GCTGTTGGCAAGTTTGATTTAGCTGTTCAGGATGTCAATGTTTTGTTGGGTTCTGATCCT 707
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 649 GCTGTTGGCAAGTTTGATTTAGCTGTTCAGGATGTTAATGTTTTGTTGGGTTCTGATCCT 708
Query 708 AATCATAAGGATGCTGGTGAGATTTCCAAGCGGTTAAAAACCGCTTTGGGTCCTCATCAA 767
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 709 AATCATAAGGATGCTGGTGAGATTTCGAAGCGGTTAAAAACTGCTTTGGGTCCTCACCAA 768
Query 768 GATTTGCAGAGTCGTCCTTCACCTGCAGCTCTTGGTGCTTCGGCTGCGTTAGGCGGTCCG 827
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 769 GATTTGCAGAGCCGTCCTTCACCTGCAGCTCTTGGTGCTTCGGCTGCTTTAGGCGGTCCT 828
Query 828 ATTGCTGGACTTGGTCCTTGTTTACCTTCTCGTAATGTTCATAAAAAGGGTGTTGCTTCG 887
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 829 ATTGCTGGACTTGGTCCTTGTTTGCCTTCTCGTAATGTTCATAAAAAGGGAGTTACTTCG 888
Query 888 CCTGTTGGGTCTGTTTCGTTGCCTAATGCTAGTAATGGTAAGGTTGAGAGGCCCCAGGTG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 889 CCTGTTGGGTCTGTTTCGTTGCCTAATGCTAGTAATGGTAAGGTTGAGAGGCCACAGGTG 948
Query 948 GTGAATCCTGTGACTGAAAATGGCGGTTCAGTGAGTAAGGGACAGGCGTCGAGAGTTGTG 1007
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 949 GTGAATCCTGTGACTGAAAATGGTGGTTCGGTGAGTAAGGGACAGGCGTCGAGAGTTGTG 1008
Query 1008 TTGAAGCCGGTTAGTCATTCACCGAAAGGGTCGAAGGTGGAGGAGTTGGGTTCTTCATCT 1067
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct 1009 TTGAAGCCGGTTAGTCATTCGCCAAAAGGGTCGAAGGTTGAGGAGTTGGGTTCTTCTTCT 1068
Query 1068 GTGGCTGTTGTTGAGAAGGTTCAAGAGAAGAGGATTCGGTGGAGGCCGTTGAAGTTTGTT 1127
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GTGGCGGTTGTTGGGAAGGTTCAAGAGAAGAGGATTCGGTGGAGGCCGTTGAAGTTTGTT 1128
Query 1128 TATGATCATGACATAAGGTTGGGTCAGATGCCTGTGAACTGTAGGTTTAAGGAATTGAGA 1187
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TATGACCATGACATAAGGTTGGGTCAGATGCCTGTGAACTGTAGGTTTAAGGAATTGAGA 1188
Query 1188 GAGATTGTGAGCAGTCGTTTCCCGTCTTCGAAGGCGGTTTTGATTAAGTACAAGGACAAT 1247
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1189 GAGATTGTGAGCAGTCGTTTCCCGTCTTCAAAGGCGGTTTTGATTAAGTACAAGGACAAT 1248
Query 1248 GATGGAGATTTGGTGACTATAACTTCTACTGCAGAGCTGAAATTGGCGGAATCTGCTGCT 1307
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GACGGAGATTTGGTGACTATAACTTCTACTGCAGAGCTGAAATTGGCGGAATCTGCTGCT 1308
Query 1308 GATAGTCTTTTGACGAAAGAGCCTGATACTGATAAGTCTGATTCTGTTGGGATATTGAGA 1367
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1309 GATTGTATTTTGACGAAAGAGCCTGATACTGATAAGTCTGATTCTGTTGGGATGTTGAGA 1368
Query 1368 TTGCATGTTGTTGATGTGAGTCCTGAGCAAGAGCCGATGTTGCTAGAGGAAGAAGAGGAG 1427
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1369 TTGCATGTTGTTGATGTGAGTCCTGAGCAAGAGCCGATGTTGCTCGAGGAAGAAGAGGAG 1428
Query 1428 GAAGTGGAAGAGAAGCCTGTTGTAGAAGAAGTCATATCATCTCCTACAGAATCAGTATCT 1487
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1429 GAAGTGGAAGAGAAGCCTGTTATAGAAGAAGTCATATCATCTCCTACAGAATCACTATCG 1488
Query 1488 GAAACAGAGATCAACAATGAGAAGACGGATAAGGAAGTTGAAAAGGAGAAAGCGGGTTCT 1547
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1489 GAAACAGAGATCAACACTGAGAAGACAGATAAGGAAGTTGAAAAGGAGAAAGCAAGTTCT 1548
Query 1548 TCTGAAGATCCTGAGACCAAGGAATTGGAGATGGATGATTGGTTGTTTGATTTTGCTCAT 1607
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1549 TCTGAAGATCCTGAGACCAAGGAATTGGAGATGGACGACTGGTTGTTTGATTTTGCTCAT 1608
Query 1608 CTCTTCCGTACTCATGTTGGTATTGACCCTGATGCTCATATTGACTTGCATGAGTTGGGA 1667
|| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1609 CTGTTCCGTACTCATGTCGGTATTGACCCTGATGCTCATATTGATTTACATGAGTTGGGA 1668
Query 1668 ATGGAGCTCTGCTCAGAGGCGCTTGAAGAAACTGTGACAAGCGAGAAAGCTCAACCACTA 1727
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ATGGAGCTTTGCTCAGAGGCGCTTGAAGAAACTGTGACAAGCGAGAAAGCTCAACCACTA 1728
Query 1728 TTCGATAAAGCTTCTGCGAAATTCCAAGAAGTCGCTGCTTTAGCTTTCTTCAACTGGGGA 1787
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1729 TTCGATAAAGCTTCTGCGAAATTCCAAGAAGTCGCTGCTTTAGCTTTCTTTAACTGGGGA 1788
Query 1788 AATGTTCACATGTGTGCTGCTAGAAAGAGGATTCCTTTAGACGAATCTGCAGGAAAAGAA 1847
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1789 AATGTTCACATGTGTGCCGCTAGAAAGAGGATTCCTTTAGACGAATCTGCGGGAAAAGAA 1848
Query 1848 GTGGTTGCAGCACAGCTTCAAACCGCTTACGAGTGGGTGAAAGAGAGATACACATTGGCC 1907
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 GTGGTTGCTGCACAACTTCAAACCGCTTACGAGTGGGTGAAAGAGAGATACACATTGGCA 1908
Query 1908 AAGGAGAAATATGAGCAGGCCCTCTCTATCAAACCAGATTTTTACGAGGGTTTGCTTGCT 1967
|||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1909 AAGGAGAAATATGAACAGGCTCTCTCGATCAAACCAGATTTTTACGAAGGTTTGCTTGCG 1968
Query 1968 TTAGGACAGCAGCAATTTGAAATGGCGAAGCTACACTGGTCTTACTTGCTAGCTCAGAAG 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 TTAGGACAGCAGCAATTTGAAATGGCGAAGCTACACTGGTCTTACTTGCTAGCTCAGAAG 2028
Query 2028 ATCGATATCTCAGGTTGGGATCCGTCGGAAACCTTAAATCTCTTTGACAGCGCAGAGGCA 2087
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2029 ATCGATATCTCAGGTTGGGATCCGTCGGAAACCCTAAATCTCTTTGACAGTGCAGAGGCG 2088
Query 2088 AAGATGAAAGATGCTACAGAGATGTGGGAGAAGCTTGAAGAGCAGAGGATGGATGATCTT 2147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2089 AAGATGAAAGATGCTACAGAGATGTGGGAGAAGCTTGAAGAGCAGAGGATGGATGAT-TT 2147
Query 2148 AAAAA-CCCGAACTCGAACAAGAAAGAGGAAGTTTCTAAGAGGAGAAAGAAGCAAGGAGG 2206
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2148 AAAAAACCCGAACTCGAACAAGAAAGAGGAAGTTTCAAAGAGGAGAAAGAAGCAAGGAGG 2207
Query 2207 AGATGGGAGTGAAGAGGTTTCAGAAACAATCACAGCTGAGGAAGCAGCAGAACAAGCGAC 2266
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2208 AGATGGGAATGAAGAGGTTTCAGAGACAATCACAGCTGAGGAAGCAGCAGAACAAGCGAC 2267
Query 2267 TGCAATGAGATCACAGATCCATTTGTTTTGGGGAAACATGCTGTTCGAAAGATCGCAAGT 2326
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2268 TGCAATGAGATCACAGATCCATCTGTTTTGGGGAAACATGCTGTTCGAAAGATCGCAAGT 2327
Query 2327 TGAATGCAAAATCGGGAGGGATGGTTGGAATAAGAATCTTGATTCAGCTGTTGAAAGATT 2386
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 TGAATGCAAAATCGGGAAGGATGGTTGGAATAAGAATCTTGATTCAGCTGTTGAAAGATT 2387
Query 2387 CAAACTTGCAGGTGCTTCTGAAGCTGACATAGCAATGGTCGTCAAGAATCATTGTTCCAA 2446
||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 2388 CAAACTTGCAGGTGCTTCTGAAGCTGACATAGCAACAGTTGTCAAGAACCATTGTTCCAA 2447
Query 2447 TGAAGTCGCTGCTACTGAAGGAGATGAGAAAAAGGTACCTGCACCTTGA 2495
||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2448 TGAAGCCGCTGCTACCGAAGGAGATGAGAAAAAGGTACCTGCGCCTTGA 2496
Score = 139 bits (75), Expect = 1e-31
Identities = 85/90 (94%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 2496 TTGTTTTTGCTTTAGGGATTGATTCTTCTGAACTTGCTTCTTCTTATCTAATGATAAAAG 2555
|||||||||| |||| ||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 2746 TTGTTTTTGCATTAGTGATTGATTCTTCTGAACTTCCTTCTTCTTCTTTAATGATAAAAG 2805
Query 2556 CTACTTTAGCTTCATTTGTGTTAAGTTCTG 2585
||||||||||||||||||||||||||||||
Sbjct 2806 CTACTTTAGCTTCATTTGTGTTAAGTTCTG 2835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128327040194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5