BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475105
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62380.1 | Symbols: ACO2, ATACO2 | ACC oxidase 2 | chr1:2308... 1845 0.0
AT1G12010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 881 0.0
> AT1G62380.1 | Symbols: ACO2, ATACO2 | ACC oxidase 2 | chr1:23082170-23084253
FORWARD LENGTH=1318
Length=1318
Score = 1845 bits (999), Expect = 0.0
Identities = 1226/1330 (92%), Gaps = 37/1330 (3%)
Strand=Plus/Plus
Query 1 CACATATTTTCTCACAATTTTAATTATTTTAATCAAATCCAATATCCCTCATTTGCGCCT 60
|||||||||||||| ||||||| |||||||| | ||| ||||| || |||||||||||||
Sbjct 1 CACATATTTTCTCAGAATTTTATTTATTTTATTGAAAGCCAATCTCTCTCATTTGCGCCT 60
Query 61 ATAAATAGCAACCCTCTCTCATTTC-ATAAGTCTTCACATCAAAGCAATAAACATACACA 119
||||||||||||||||||||| ||| | ||||| ||||||||||||||| |||| | |||
Sbjct 61 ATAAATAGCAACCCTCTCTCA-TTCTACAAGTC-TCACATCAAAGCAATTAACAAATACA 118
Query 120 CAACTTGCAACTTCAAATAGAGTACTTTCaaaaaagagagagagagaaaaagaaagatgg 179
||||||| ||||||||||||| ||||||| ||||| ||||||||| ||||||||||||
Sbjct 119 CAACTTGTAACTTCAAATAGATTACTTTC---AAAGA-AGAGAGAGAGAAAGAAAGATGG 174
Query 180 agaagaaCATGAAGTTTCCAGTGGTAGACTTGTCCAAGCTCAATGGTGAAGAGAGAGACC 239
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 175 AGAAGAACATGAAGTTTCCAGTAGTAGACTTGTCCAAGCTCAATGGGGAAGAGAGAGACC 234
Query 240 AAACCATGGCTTTAATCAATGAAGCTTGTGAGAATTGGGGGTTCTTTGAGATAGTGAACC 299
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 235 AAACCATGGCTCTAATCAATGAAGCTTGTGAGAATTGGGGCTTCTTTGAGATAGTGAACC 294
Query 300 ATGGATTACCACATGACTTGATGGACAAGATCGAGAAGATGACAAAGGAACATTACAAGA 359
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 295 ATGGATTACCACATGACTTAATGGACAAGATCGAGAAGATGACAAAGGACCATTACAAGA 354
Query 360 CATGTCAAGAACAAAAGTTCAATGATATGCTCAAGTCCAAAGGTTTGGATAATCTTCAGA 419
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 355 CATGCCAAGAACAAAAGTTCAATGACATGCTCAAGTCCAAAGGTTTGGATAATCTTGAGA 414
Query 420 CAGAAGTCGAAGATGTTGACTGGGAAAGCACTTTCTATGTTCGTCACCTCCCTCAGTCCA 479
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 415 CAGAAGTCGAAGATGTCGATTGGGAAAGCACTTTCTACGTTCGTCACCTCCCTCAATCCA 474
Query 480 ATCTCAGTGACATTTCAGATGTGTCTGATGAATACAGGACGGCCATGAAAGACTTTGGGA 539
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 475 ATCTCAATGACATTTCAGATGTGTCTGATGAATACAGGACGGCCATGAAAGACTTTGGTA 534
Query 540 AGAGATTAGAGAATCTTGCAGAGGAGTTGTTGGATCTACTTTGTGAGAATCTAGGGTTGG 599
||||| | ||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 535 AGAGACTGGAGAATCTTGCTGAGGATTTGTTGGATCTACTGTGTGAGAATCTAGGGTTAG 594
Query 600 AGAAAGGGTATATGAAGAAAGTGTTTCATGGAACCAAAGGACCAACCTTTGGGACAAAGG 659
||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 595 AGAAAGGGTATTTGAAGAAAGTGTTTCATGGAACAAAAGGCCCAACCTTTGGGACAAAGG 654
Query 660 TGAGCAATTATCCACCATGTCCTAAACCAGAGATGATCAAAGGTCTTAGGGCCCACACTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGAGCAATTATCCACCATGTCCTAAACCAGAGATGATCAAAGGTCTTAGGGCCCACACTG 714
Query 720 ATGCAGGAGGCATCATCTTGTTGTTTCAAGACGACAAGGTCAGTGGTCTCCAGCTTCTTA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATGCAGGAGGCATCATCTTGTTGTTTCAAGACGACAAGGTCAGTGGTCTCCAGCTTCTTA 774
Query 780 AAGATGGTGAGTGGATTGATGTTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTG 839
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGATGGTGACTGGATTGATGTTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTG 834
Query 840 ACCAACTTGAGGTGATAACCAACGGGAAGTACAAGAGTGTGATGCACCGTGTGGTGACTC 899
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 835 ACCAACTTGAGGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTC 894
Query 900 AACAGGAAGGAAATAGGATGTCGATTGCATCGTTTTACAATCCGGGAAGCGATGCCGAGA 959
|||| |||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 895 AACAAGAAGGAAACAGGATGTCGGTTGCATCGTTTTACAACCCGGGAAGCGATGCGGAGA 954
Query 960 TCTCTCCTGCAACTTCACTTGTCGAGAAAGATACCGAGTACCCGAGTTTCGTCTTTGATG 1019
|||| || || ||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 955 TCTCACCAGCTACTTCGCTTGTCGAGAAAGATTCCGAGTACCCGAGTTTCGTCTTTGATG 1014
Query 1020 ACTACATGAAGCTTTATGCAGGGGTCAAGTTTCAGCCCAAGGAGCCACGGTTCGCAGCAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ACTACATGAAGCTTTATGCAGGGGTCAAGTTTCAGCCCAAGGAGCCACGGTTCGCAGCAA 1074
Query 1080 TGAAGAATGCTTCTGCAGTTACAGAATTGAATCCTACAGCAGCCGTAGAGACCTTCTAAA 1139
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1075 TGAAGAATGCTTCTGCAGTTACAGAACTGAATCCTACAGCAGCCGTAGAGACTTTCTAAA 1134
Query 1140 CC-GGATTTGAGGTTTAAGTGAAGCAGAGAAAGAAAGAA-AGAA-GA-T-GAGT-TT--G 1191
||||||||| || |||||||||||||||||||||| || | | | || || |
Sbjct 1135 AATGGATTTGAGATTCAAGTGAAGCAGAGAAAGAAAGATGAGTTTGTGTTGTGTGTTATG 1194
Query 1192 ----T--GTT----CT-GT----GT-TTGATTAATTGTTGGTCAATTGGTGTGTTTAAAC 1235
| ||| || || || ||||||||||||||||||||||||||||||
Sbjct 1195 GCAATAAGTTAAAACTTGTATTAGTGTTGATTAATTGTTGGTCAATTGGTGTGTTT---- 1250
Query 1236 TTTAAAGTGTGGGGTGTTTATGCTTATGGAAGATGATAACAATAATAATAATCTGAATTC 1295
| ||||||||||||||||||| |||||||||||||||| ||| |||| ||||| |||||
Sbjct 1251 T--AAAGTGTGGGGTGTTTATGTTTATGGAAGATGATAATAATTATAAAAATCTAAATTC 1308
Query 1296 TAAGAGTTCT 1305
||||||||||
Sbjct 1309 TAAGAGTTCT 1318
> AT1G12010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:4056207-4057933
FORWARD LENGTH=1293
Length=1293
Score = 881 bits (477), Expect = 0.0
Identities = 810/969 (84%), Gaps = 30/969 (3%)
Strand=Plus/Plus
Query 160 agagagaaaaagaaagatggagaagaaCATGAAGTTTCCAGTGGTAGACTTGTCCAAGCT 219
||||||| | ||| ||||||||| |||||| ||||||||||| |||||||||| |||||
Sbjct 52 AGAGAGAGAGAGAGAGATGGAGATGAACATTAAGTTTCCAGTTATAGACTTGTCTAAGCT 111
Query 220 CAATGGTGAAGAGAGAGACCAAACCATGGCTTTAATCAATGAAGCTTGTGAGAATTGGGG 279
||||||||||||||||||||||||||||||||| ||| | || |||||| | || |||||
Sbjct 112 CAATGGTGAAGAGAGAGACCAAACCATGGCTTTGATCGACGATGCTTGTCAAAACTGGGG 171
Query 280 GTTCTTTGAGATAGTGAACCATGGATTACCACATGA-CTTGATGGACAAGATCGAGAAGA 338
||||| ||| | |||||||||||| ||||| |||| || |||||||| || |||| ||
Sbjct 172 CTTCTTCGAGCTGGTGAACCATGGACTACCATATGATCTA-ATGGACAACATTGAGAGGA 230
Query 339 TGACAAAGGAACATTACAAGACATGTCAAG-AACAAAAGTTCAATGATATGCT-CAAGT- 395
||||||||||||| ||||||| | | | | ||||||||||||| || ||||| | ||
Sbjct 231 TGACAAAGGAACACTACAAGAAACAT-ATGGAACAAAAGTTCAAAGAAATGCTTC--GTT 287
Query 396 CCAAAGGTTTGGATAATCTTC-AGACAGAAGTCGAAGATGTTGACTGGGAAAGCACTTTC 454
|||||||||| |||| || | |||| ||||| |||||||| || |||||||||||||||
Sbjct 288 CCAAAGGTTTAGATACCCT-CGAGACCGAAGTTGAAGATGTCGATTGGGAAAGCACTTTC 346
Query 455 TATGTTCGTCACCTCCCTCAGTCCAATCTC-AGTGACATTTCAGATGTGTCTGATGAATA 513
|| | | ||| |||||||| || || || | ||||| | ||| |||| |||||||
Sbjct 347 TACCTCCATCATCTCCCTCAATCTAACCTATAC-GACATCCCTGATATGTCAAATGAATA 405
Query 514 CAGGAC-GGCCATGAAAGACTTTGGGAAGAGA-TTAGAGAATCTTGCAGAGGAGTTGTTG 571
| | | ||| ||||| || ||||||||||| || |||| ||| || || ||| | |||
Sbjct 406 CCG-ATTGGCAATGAAGGATTTTGGGAAGAGGCTT-GAGATTCTAGCTGAAGAGCTATTG 463
Query 572 GATCTACTT-TGTGAGAATCTAGGGTTGGAGAAAGGGTA-TATGAAGAAAGTGTTTCATG 629
|| || || ||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 464 GA-CTTGTTGTGTGAGAATCTAGGGTTGGAGAAAGGGTACT-TGAAGAAGGTGTTTCATG 521
Query 630 GAACCAAAGGA-CCAACCTTTGGGACAAAGGTGAGCAATTATCCACCATGTCCTAAACCA 688
| || || || ||||| |||| ||||||| | ||||| |||||||||||||||||||||
Sbjct 522 GGAC-AACGGGTCCAACTTTTGCGACAAAGCTTAGCAACTATCCACCATGTCCTAAACCA 580
Query 689 GAGATGATCAAAGGTCTTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTGTTTCAA 748
|||||||||||||| |||||||| ||||| |||||||||||| |||| ||| ||||||||
Sbjct 581 GAGATGATCAAAGGGCTTAGGGCTCACACAGATGCAGGAGGCCTCATTTTGCTGTTTCAA 640
Query 749 GACGACAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGAGTGGATTGATGTTCCTCCT 808
|| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 641 GATGATAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGATTGGGTTGATGTTCCTCCT 700
Query 809 CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGGTGATAACCAACGGGAAG 868
||||| || || ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 701 CTCAAGCATTCCATTGTCATCAACCTTGGTGACCAACTTGAGGTGATAACAAACGGGAAG 760
Query 869 TACAAGAGTGTGATGCACCGTGTGGTGACTCA-ACAGGAAGGAAATAGGATGTCGATTGC 927
||||||||||| |||||||||||| |||| || | || ||||||| |||||||| || ||
Sbjct 761 TACAAGAGTGTAATGCACCGTGTGATGACCCAGAAAG-AAGGAAACAGGATGTCTATCGC 819
Query 928 ATCGTTTTACAATCCGGGAAGCGATGCCGAGATCTCTCCTGCAACTTCACTTGTCGAGAA 987
||||||||||| || ||||||||||| ||||||||||| ||||| || ||||| || ||
Sbjct 820 GTCGTTTTACAACCCCGGAAGCGATGCTGAGATCTCTCCGGCAACATCTCTTGTGGATAA 879
Query 988 AGA-TACCGAGTACCCGAG-TTTCGTCTTTGATGACTACATGAAGCTTTATGCAGGGGTC 1045
||| | | | ||||| || ||| || ||||||||||||||||| || ||||| || ||
Sbjct 880 AGACT-CAAAATACCCAAGCTTT-GTGTTTGATGACTACATGAAACTCTATGCCGGACTC 937
Query 1046 AAGTTTCAGCCCAAGGAGCCACGGTTCGCAG-CAATGAAGAATGCTTCTGCAGTTACAGA 1104
||||||||| |||||||||||||||||| || | ||||| |||||| |||| | | ||
Sbjct 938 AAGTTTCAGGCCAAGGAGCCACGGTTCG-AGGCGATGAAAAATGCTGAAGCAGCTGCGGA 996
Query 1105 ATTGAATCC 1113
||||||||
Sbjct 997 TTTGAATCC 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5