BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475108
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62350.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 881 0.0
AT3G42570.1 | Symbols: | peroxidase family protein | chr3:1468... 135 3e-31
> AT1G62350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23056653-23058114 FORWARD LENGTH=621
Length=621
Score = 881 bits (477), Expect = 0.0
Identities = 554/592 (94%), Gaps = 2/592 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAAAGAAGGTTTAATCGCTGCCAAAGAGCTCAAGCGTCTCCAAACCCAATTAGTC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGAGCAAAGAAGGTTTAATCGCAGCCAAAGAGCTCAAGCGTCTCCAAACCCAATCAGTC 60
Query 61 CGACTTGATCGATTCATTGCTTCTCATGTCTCTCGTCTCCTTAAATCCGATCTTGTTTCT 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CGACTTGATCGATTCATTGGTTCTCATGTCTCTCGTCTCCTTAAATCCGATCTCGTTTCC 120
Query 121 GTTCTTGCTGAGTTTCAGAGACAAAACCAAGTTTTCCTCTGTATGAAGCTTTATGAAGTT 180
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 121 GTTCTTGCTGAATTTCAGAGACAAAACCAAGTGTTCCTCTGTATGAAGCTCTATGAAGTA 180
Query 181 GTGAGAAGAGAAATATGGTATAGAGCGGATATGtttttttACAGAGACATGCTCATGATG 240
||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||
Sbjct 181 GTGAGGAGAGAAATATGGTACAGACCGGACATGTTTTTTTACAGAGACATGCTAATGATG 240
Query 241 CTTGCAAGAAACAAGAAAGTGGATGAAACCAAGAAAGTATGGGAAGATTTAAAGAAAGAA 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGCAAGAAACAAGAAAGTTGATGAAACCAAGAAAGTATGGGAAGATTTAAAGAAAGAA 300
Query 301 GGA-GTTTTGTTTGATCAACATACTTTTGGAGACCTTGTTCGAGCGTTCTTGGATAACGA 359
|| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 301 -GAGGTTTTGTTTGATCAACATACATTTGGAGACCTTGTTCGAGGGTTCTTGGATAATGA 359
Query 360 ACTTCCGTTAGAAGCAATGAGATTGTATGGAGAGATGAGAGATTCTCCTGACCCGCCTTT 419
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 360 ACTTCCTTTAGAAGCAATGAGATTGTATGGAGAGATGAGAGAGTCTCCTGACCGGCCTTT 419
Query 420 GTCTCTGCCTTTTCGAGTTATTCTGAAAGGACTCGTTCCTTATCCTGAATTGAGGGAGAA 479
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 420 ATCTCTGCCTTTTCGAGTTATTTTGAAAGGACTCGTTCCTTATCCTGAGTTGAGAGAGAA 479
Query 480 AGTGAAAGATGATTTCTTGGAGCTTTTCCCTGGAATGATTGTGTATGATCCTCCCGAGGA 539
||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 480 AGTTAAAGATGATTTCTTGGAGCTTTTCCCTGGAATGATTGTATACGATCCTCCTGAGGA 539
Query 540 TTTGTGCGAAGAAAGTGATGAAGAAGCGAGAACAGATAGTGATCTTGAGTAG 591
| | || ||||| |||||||||||||| ||||||||||| |||||||| |||
Sbjct 540 TATATGTGAAGATAGTGATGAAGAAGCAAGAACAGATAGCGATCTTGAATAG 591
> AT3G42570.1 | Symbols: | peroxidase family protein | chr3:14689058-14690347
FORWARD LENGTH=453
Length=453
Score = 135 bits (73), Expect = 3e-31
Identities = 82/86 (95%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 3 GAGCAAAGAAGGTTTAATCGCTGCCAAAGAGCTCAAGCGTCTCCAAACCCAA-TTAGTCC 61
||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 21 GAGCAAAGAAGGTTTAATCGCTGCCAAAGAGCTCAAGCGCCTCCAAACC-AACTTAGTCC 79
Query 62 GACTTGATCGATTCATTGCTTCTCAT 87
|||||||||||||||||| |||||||
Sbjct 80 GACTTGATCGATTCATTGATTCTCAT 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5