BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475110

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62333.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   499    7e-141


> AT1G62333.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 
proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other 
Eukaryotes - 2996 (source: NCBI BLink). | chr1:23050445-23050940 
FORWARD LENGTH=496
Length=496

 Score =  499 bits (270),  Expect = 7e-141
 Identities = 337/368 (92%), Gaps = 10/368 (3%)
 Strand=Plus/Plus

Query  1    ATTGCAATAACAAAGCACAAAATGcctcatcctcctcctcatcgtcctccttctcctcct  60
            |||||||||||||  |||||||||||| |||||||||||||||||| | |  ||||||||
Sbjct  1    ATTGCAATAACAATTCACAAAATGCCTTATCCTCCTCCTCATCGTCAT-C--CTCCTCCT  57

Query  61   ttccACCATTCACCGCCACCAAGAGCACGgcctccagagcctcgccctcctccacctcct  120
            ||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct  58   TTCCACCATCCACCGCCACCAAGACCACCGCCTCCGGAGCCTCGCCCTCCTCCACCTCCT  117

Query  121  ccaggacctcagccacctcctccacctcctccgggacctgacccaccacctccacctccC  180
            ||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||| ||||
Sbjct  118  CCAGGACCTCAGCCACCACCTCCACCTCCTCCCAGACCTGATCCACCACCTCCACTTCCC  177

Query  181  GGGGCTACTTGGTTTTCAGGACCTCTTGGGCCACGCCCTCCTAGACCACAATATTAGTAT  240
            || |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||  
Sbjct  178  GGAGCTACTTGGTTTCCAGGACTTCTTGGGCCACGCCCTCCTAGACCACCATATTAGT--  235

Query  241  CGTCATGAAT-TTTTGGTCTAATTAAGTATATAATTC-AACATATATATTGTCGAAACAT  298
            |||||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct  236  CGTCATGAATGTTTTGGTCTATTTAAGTATATAATTCGAA-ATATATATTGTCGAAACAT  294

Query  299  CTTAGATCTTTAAAGATTTCATATCTGCATGACACTTTCATGTGTATTAGGCTCATATGT  358
            |||||||||||||||||||||||| || |  ||||||||||||||||||||||||| |||
Sbjct  295  CTTAGATCTTTAAAGATTTCATATGTGTA--ACACTTTCATGTGTATTAGGCTCATCTGT  352

Query  359  GTAATCAT  366
            ||||||||
Sbjct  353  GTAATCAT  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5