BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475111
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62330.1 | Symbols: | O-fucosyltransferase family protein |... 2994 0.0
AT1G11990.1 | Symbols: | O-fucosyltransferase family protein |... 553 3e-156
> AT1G62330.1 | Symbols: | O-fucosyltransferase family protein
| chr1:23046893-23050193 FORWARD LENGTH=2171
Length=2171
Score = 2994 bits (1621), Expect = 0.0
Identities = 1883/2009 (94%), Gaps = 20/2009 (1%)
Strand=Plus/Plus
Query 10 GAGAGACCTGACGAAGAGAAACCAGAGACTCGCGATG---TTCGAGTCCAAGATCTGATC 66
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 82 GAGAGACCAGACGAAGAGAAACCAGAGACTCGCGATGTTCTTCGAGTCCAAGATCTGATC 141
Query 67 CATGGAGGTGGAGGAGGAGCTTCTCCGGTTCAATCACCGACTCGACTCGGTCCGGGTTGG 126
|||||| |||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct 142 CATGGA---GGAGGAGGAGCTTCACCGGTTCAATCACCGACACGTCTCGGTCCAACCCGC 198
Query 127 TTCTCAGAAGTAGCTGGTGACAAGATTCGTAATACCGGGTCGGATTTTATTGGGTCGATT 186
|| |||||||||||||| |||||||||| ||| ||||||||| ||| ||| |||||| ||
Sbjct 199 TTTTCAGAAGTAGCTGGAGACAAGATTCTTAACACCGGGTCGAATTGTATCGGGTCGGTT 258
Query 187 TTGTCTTGGATCAACGGAGATCCAAACCGGAGTTTGAAAAATCCGGTTAAGAGAGCAAAG 246
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 259 TTGTCTTGGATCAACGGAGATCCAAACCGGAATTTGAAAAATCCGGTTAAGAGAGCAAAA 318
Query 247 AGGAAACGAATCAGAACGGCGAAAACCGCCGCGTGTGTAATCGCACTTGTTGGTTTCTTC 306
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 319 AGGAAACGAATCAGAACGGCGAAAACCGCCGCGTTTGTAATCGTACTTGTTGGTTTCTTC 378
Query 307 ATTTTTGTTAATTGGTTTATGCTCTCTCAGCTTCATGAAGGTCGAGCTTGGCTACGGAGA 366
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 379 ATTTTCGTTAATTGGTTTATGCTCTCTCAGCTCCATGAAGGTCGAGCTTGGCTACGGAGA 438
Query 367 GGGTTCTCGAAAAAACCGAATCTTAAACCGAAATTGAACCCGGATCCGAACCCGAGTATG 426
|| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 439 GGATTCTCGAAAAAAACGAATCTTAAACCGAAACTGAACCCGGATCCGAACTCGAGTGTG 498
Query 427 AAACGGGTATCCGTTAAAGTGTCGGCGAATGTACAGCATGGAGAGAAGAAAAAGATGGGA 486
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 499 AAACGGGTATCCGTTAAAGTGTCGGCGAATGTACAGCATAAAGAGAAGAAAAAGATGGGA 558
Query 487 AAACCAAAGAAGAAATATAATGGAACCTATGGTAGATTGTTGGCTTATGCTGCTCATGCG 546
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 559 AAACCAAAGAAGACATATAATGGAACATATGGTAGATTGTTGGCTTATGCTGCTCATGCT 618
Query 547 TTGGCTGAGGGGCAAAACAAACTTGAACCAAAAGAGCTATGGAGAGAACCGAAGGACCAA 606
|||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||
Sbjct 619 TTGGCTGAGGGGCAAAACAAGCTTGAACCAAAAGAGTTGTGGAGAGAACCAAAGGACCAA 678
Query 607 ------GCTTGGAAGCCTTGCGCTGATCAACGTTCCTGGAAGCCTAATGATGGGAAAAAT 660
|||||||||||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 679 GCTTTGGCTTGGAAGCCTTGTGCTGATCAACGTTCCTGGAAGCCTAGTGATGGTAAAAAT 738
Query 661 GGATATATAATGGTAACTGCAAATGGTGGGATCAACCAACAGAGAGTTGCTGTTTGTAAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GGATATATAATGGTAACTGCAAATGGTGGGATCAACCAACAGAGAGTTGCTGTTTGTAAC 798
Query 721 ATCGTTGTTGTTGCTCGGATGCTCAATGCGACACTCGTTGTTCCCAAATTCATGTTCAGT 780
|||||||||||||| |||||||| ||||||||||||||| |||| ||||| ||||||||
Sbjct 799 ATCGTTGTTGTTGCGCGGATGCTAAATGCGACACTCGTTATTCCTAAATTTATGTTCAGC 858
Query 781 GATGTCTGGACCGATGCAAGTCAGTTTGGAGATATCTATCAGGTGGAACATTTTATCAAG 840
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 859 GATGTCTGGACCGATGCAAGTCAGTTTGGAGATATCTATCAGGTGGAACACTTTATAAAG 918
Query 841 TATCTCTCTCCCGATATCCGGATTGTAAAGAAACTACCAAAAGAGCTTCAGTCTCTAGAT 900
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 919 TATCTTTCTCCTGATATCCGGATTGTAAAGAAACTACCCAAAGAGCTTCAGTCTCTAGAT 978
Query 901 CTTGAGGCTATTGGCAGCGTCGTTACGGATATAGATGTCATGAAAGAAGCCAAGCCGGGG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 979 CTTGAGGCTATTGGCAGCGTCGTTACGGATATAGATGTCATGAAAGAAGCCAAGCCCGGG 1038
Query 961 TTTTATATGAAGCACATTCTTCCTCTTCTGCTCAAAAACAGAGTCGTCCATTTCTTCGGA 1020
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1039 TTTTATATGAAGCACATTCTTCCTCTTCTACTCAAAAACAGAGTCGTCCATTTCTTAGGA 1098
Query 1021 TTCGGAAACCGTTTGGCCTTTGATCCGATACCGTTTGAGTTACAGAGGCTGCGGTGTAGA 1080
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTCGGAAACCGTTTGGCCTTTGACCCGATACCGTTTGAGTTACAGAGGCTGCGGTGTAGA 1158
Query 1081 TGTAATTTTCATGCGCTAAACTTCGTTCCAAAGATACAAGAAACGGGTGCGATTCTTGTG 1140
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1159 TGTAATTTTCATGCGCTAAACTTCGTTCCGAAGATACAAGAAACGGGTGCGATACTCGTA 1218
Query 1141 AGGAGATTACGAGATAGTGGATCACACCTTGCACCGGTTGACCCGTATCTCGTCGGTCCA 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1219 AGGAGATTACGAGATAGTGGATCACACCTTGCACCAGTTGACCCGTATCTCGTCGGTCCA 1278
Query 1201 AAATTTGCGTCCTTCATATTGGACAA-AAAGGCGGGTCCTCTCCATAAGGCTTCTAAGTA 1259
||||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1279 AAATTTGCGTCATTCATATTGGACAAGAAA-GCAGGTCCTCTCCATAAGGCTTCTAAGTA 1337
Query 1260 TCTAGCAGTCCATCTCAGGTTTGAAATCGACATGGTGGCTCATTCTCTCTGTTACTTCGG 1319
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1338 TCTAGCAGTCCATCTCAGGTTTGAAATTGATATGGTGGCTCATTCTCTCTGTTACTTCGG 1397
Query 1320 AGGAGGCGATGCAGAAAAGGCGGAACTTGATGCTTACCGGGAAAAGCATTTTCCGACACT 1379
|||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct 1398 AGGAGGTGATGCGGAAAAGGCAGAGCTTGATGCTTACCGGGAAAAGCATTTCCCGACGTT 1457
Query 1380 GGCAAATCTAACAAAGAC-AAAGAAAATGCCCTCTCCGGACGATCTGAGAACGGAAGGGC 1438
|||||||||||||||||| || |||||||| ||||| ||||||||||| || ||||| |
Sbjct 1458 GGCAAATCTAACAAAGACGCAA-AAAATGCCATCTCCAGACGATCTGAGGACAGAAGGAC 1516
Query 1439 TTTGTCCGTTATCACCTGAAGAAGCCGTGCTTATGCTTGCAGGTCTCGGTTTCAATCGGA 1498
||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | |||||
Sbjct 1517 TTTGTCCTTTATCACCTGAAGAAGCCGTGCTTATGCTTGCGGGTCTGGGTTTTAGTCGGA 1576
Query 1499 AGACCCGTGTTTTTGTGGCTGGTGCAAATATATATGGTGGGAATAAACGGTTAGCCGCTT 1558
|||| |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1577 AGACACGTGTTTTCGTCGCTGGTGCGAATATATATGGTGGGAATAAACGGTTAGCAGCTT 1636
Query 1559 TAACAAGTCTCTACCCAAATCTAGTCACCAAAGAGAATGTACTCTCTGAAACGGAGCTAG 1618
|||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1637 TAACGAGTCTCTACCCGAATCTAGTCACCAAAGAGAATGTACTCTCACAAACTGAGCTAG 1696
Query 1619 AGCCTTTCAAAAATTTCTCATCTCAGCTAGCGGTTCTTGATTTCATTGCCTGCGCAGCAT 1678
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1697 AGCCTTTCAAGAACTTCTCATCTCAGCTAGCGGTTCTTGATTTCATTGCATGCGCTGCAT 1756
Query 1679 CGGACGCCTTTGCGATGACGGATTCAGGGAGCCAGTTGTCGTCTCTGGTCTCGGGTTACC 1738
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1757 CAGACGCCTTTGCGATGACGGATTCAGGGAGCCAATTGTCGTCTCTGGTCTCGGGTTATC 1816
Query 1739 GGATATATTACGGAGCAGGGAAAATGCCGACGATCAGACCGAACAAACGGAGATTCTCAG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GGATATATTACGGAGCAGGGAAAATGCCGACGATCAGACCGAACAAACGGAGATTCTCAG 1876
Query 1799 ACATATTGTTGAAGAACAATACTATAGAGTGGAAAGTGTTCGAGCAGAGAGTGAGAAAAA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 ACATATTGTTGAAGAACAATACTATAGAGTGGAAAGTGTTCGAGCAGAGAGTGAGAAAAA 1936
Query 1859 CGGTTAGGCAAACCAAACATGTATTGGTTAGACCAACGGGACGCAGCGTTTACCGTTACC 1918
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1937 CGGTTAGGCAAACCAAACATGTATTGGTTAGACCGACGGGACGCAGCGTTTACCGTTATC 1996
Query 1919 CAAGATGTAAAGAATGTATGTGTAGTGAAGATTGATTATTAATTTGTTTTACATTGTTGG 1978
|||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||
Sbjct 1997 CAAGATGTAAAGAATGTATGTGTAATGAAGATTGATTATT--TG-GTTT-ACATTGTTGG 2052
Query 1979 TTCGGTATTTTAAACGGTTTTCATATTTT 2007
|||||| ||||||||||| ||||||||||
Sbjct 2053 TTCGGTTTTTTAAACGGTCTTCATATTTT 2081
> AT1G11990.1 | Symbols: | O-fucosyltransferase family protein
| chr1:4046246-4049060 REVERSE LENGTH=1773
Length=1773
Score = 553 bits (299), Expect = 3e-156
Identities = 558/680 (82%), Gaps = 30/680 (4%)
Strand=Plus/Plus
Query 1277 GGTTTGAAATCGACATGGTGGCTCATTCTCTCTGTTACTTCGGAGGAGGCGATGCAGAAA 1336
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 1100 GGTTTGAAATCGACATGGTGGCTCATTCTCTATGTTACTTCGGAGGAGGTGAAACAGAAC 1159
Query 1337 AGGCGGAACTT-GATGCTTACCGGGAAAAGCATTTTCCGA-CACTGGCAAATCTAACAAA 1394
|| | | || ||| ||||||| |||| || ||||| | | || ||| | |||| |
Sbjct 1160 AGAAAG-AGTTGGATTCTTACCGCCAAAAACACTTTCC-ATCTCTTTCAACTTTAAC-CA 1216
Query 1395 GACAAAGAAAATGCC-CTCTCCGGACGATCTGAGAACGGAAGGGCTTTGTCCGTTATCAC 1453
|| ||| ||||| || ||| |||| | | |||| || ||||| |||||||| || |||
Sbjct 1217 GAAAAAAAAAATTCCGATCTGCGGATGTTTTGAGGACAGAAGGACTTTGTCCACTAACAC 1276
Query 1454 CTGAAGAAGCCGTGCTTATGCTTGCAGG-TCTCGGTTTCAATCG-GAAGACCCGTGTTTT 1511
| |||||||||||||||||||| || || ||| || ||||| || ||| ||||| |||||
Sbjct 1277 CCGAAGAAGCCGTGCTTATGCTCGC-GGCTCTTGGCTTCAACCGCGAA-ACCCGAGTTTT 1334
Query 1512 TGTGGCTGGTGCAAATATATATGGTGGGAAT--AAACGGTTAGCCGCT-TTAACAAGTC- 1567
|| ||||||||||| |||||||| || || ||||| ||||||| | ||||| || |
Sbjct 1335 CGTAGCTGGTGCAAACATATATGG-AGG-ATCAAAACGTTTAGCCG-TGTTAACTAG-CT 1390
Query 1568 TCTACCCAAATCTAGTCACCAAAGAGAATG-TACTCTCTGAAACGGAGCTAGAGCCTTTC 1626
| ||||| ||||||||||||||||| || | |||| | ||| | || ||| | || |||
Sbjct 1391 TATACCCGAATCTAGTCACCAAAGA-AAAGTTACTAACAGAATCCGAACTACAACCATTC 1449
Query 1627 AAAAA-TTTCTCATCTCAGCTAGCGGTTC-TT-GATTTCATTGCCTGCGCAGCATCGGAC 1683
||||| ||| |||||||||||||||| | || |||||||| || || || ||| | |||
Sbjct 1450 AAAAACTTT-TCATCTCAGCTAGCGG--CATTAGATTTCATCGCTTGTGCTGCAGCAGAC 1506
Query 1684 GCCTTTGCGATGACGGATTCAGGGAGCCAGTTGTCGTCTCTGGTCTCGGGTTACCGGATA 1743
|| ||||||||||||||||||||||| ||||| || ||||| || |||||||| |||||
Sbjct 1507 GCTTTTGCGATGACGGATTCAGGGAGTCAGTTATCATCTCTTGTATCGGGTTATCGGATT 1566
Query 1744 TATTACGGAGCAGGGAAAATGCCGACGATCAGACCGAACAAACGGAGA-TTCTCAGACAT 1802
|||||||||| ||||||| |||||||||| |||||||||||||||||| || || |||||
Sbjct 1567 TATTACGGAGGAGGGAAATTGCCGACGATAAGACCGAACAAACGGAGACTT-TCGGACAT 1625
Query 1803 ATTGTTGAAGAACAATACTATAGAGTGGAAAGTGTTCGAGCAGAGAGTGAGAAAAACGGT 1862
|||||||||||||| ||| || |||||||| ||||| ||| | ||||| |||||| || |
Sbjct 1626 ATTGTTGAAGAACAGTACGATTGAGTGGAACGTGTTTGAGAAAAGAGTAAGAAAAGCGAT 1685
Query 1863 TAGGCAAACCAAACATGTATTGGTTAGACC-AACGGGACGCAGCGTTTACCGTTACCCAA 1921
||| || || ||||||||||| | |||||| || |||||||||||||||||||||||||
Sbjct 1686 TAGACAGACGAAACATGTATTCGCTAGACCTAA-TGGACGCAGCGTTTACCGTTACCCAA 1744
Query 1922 GATGTAAAGAATGTATGTGT 1941
||||||||||||||||||||
Sbjct 1745 GATGTAAAGAATGTATGTGT 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101003496540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5