BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475115
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62305.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2084 0.0
AT1G11940.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 791 0.0
> AT1G62305.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:23026776-23029339
REVERSE LENGTH=1500
Length=1500
Score = 2084 bits (1128), Expect = 0.0
Identities = 1298/1378 (94%), Gaps = 19/1378 (1%)
Strand=Plus/Plus
Query 52 ATTCTCCCGGAGTTCGGATGCAGATCGCCGGAAGTAAGTAAATCTCGAATTTTCGAGTTT 111
||||||||||||||| ||||||||||||||| || | | || | || | ||||| ||
Sbjct 96 ATTCTCCCGGAGTTCTGATGCAGATCGCCGG-AG--A-T-AA-GT--AA-TCTCGAG-TT 145
Query 112 TACTAATGCCGCGGCTTCCGTCGTCTCGTCGCGGCGTCGTGTGGTTTCGATGGAAGATAC 171
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 146 TACTAATGCCGCGGCTTCCGTCGTCTCGTCGCGGTGTCGTGTGGTTTCGATGGAAGATAC 205
Query 172 TTATCACTCTCTCCGCCGCATTATGCATCCTCGCTCTCTTCTCTTTCAACCGTCACTCTA 231
| |||||| ||||| ||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 206 TCATCACTATCTCCACCGCATTATGCATCCTCGCTCTCTTCTGTATCAACCGTCAGTCTA 265
Query 232 ATCCCACT--G-CGACGACGACACTCTCTTCGTCTCTCTCCGTCGCGAGATCTCGTATCC 288
|| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 266 ATTCCACTGCGACGACGACGACACTGTCTTCGTCTCTCTCCGTCGCGAGATCTCGTATCC 325
Query 289 CGCTCGTTAAATACTCCGGCGATCGTCCCAAACTCGCGTTCCTTTTTCTCGCTCGCCGTG 348
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 326 CTCTCGTTAAATACTCCGGCGATCGTCCCAAACTCGCCTTCCTTTTCCTCGCTCGACGTG 385
Query 349 ATTTGCCTCTTGATTTTCTCTGGGATAGATTCTTCAAGAATGCAGATCAGAGAAATTTCT 408
||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct 386 ATTTGCCACTTGATTTTCTCTGGGACAGATTCTTCAAGAGTGCAGATCAGAGGAATTTCT 445
Query 409 CAATCTATATACATTCAATACCTGGTTTCGTATTCGATGAATCCTCCACAAGATCACAGT 468
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 446 CAATCTATGTACATTCAATACCTGGTTTCGTATTCGATGAATCATCCACAAGATCACATT 505
Query 469 TCTTCTACAATCGCCAATTGAAGAATAGCATCCAGGTAGTTTGGGGAGAATCAAGCATGA 528
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 506 TCTTCTACAATCGTCAATTGAAGAATAGCATTGAGGTAGTTTGGGGAGAATCAAGCATGA 565
Query 529 TTGCAGCAGAAAGATTGTTGCTTGCATCTGCTTTGGAAGATCCTTCGAATCAAAGATTTG 588
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 566 TTGCAGCAGAAAGATTGTTGCTTGCATCTGCTTTGGAAGATCCTTCTAATCAAAGATTTG 625
Query 589 TTCTTTTGTCTGATAGCTGTGTTCCTTTATACGACTTTGGTTACATATACAGATATCTAG 648
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 626 TTCTTTTGTCTGATAGCTGTGTTCCGTTATACGACTTTGGTTACATTTACAGATATCTAG 685
Query 649 TTTCTTCACCAAAGAGTTTTGTAGACAGCTTCCTTGATAAAGATAAACGCTACACCATGA 708
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 686 TTTCTTCACCAAAGAGTTTTGTAGACAGCTTCCTTGATAAAGATAATCGCTACACTATGA 745
Query 709 AAATGTTTCCTGTTATACGGAAAGAGAAATGGCGAAAAGGATCTCAGTGGATATCATTGA 768
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 746 AAATGTTTCCTGTTATACGGAAAGAAAAATGGCGAAAAGGATCTCAGTGGATATCATTGA 805
Query 769 TCAGAAGCCATGCAGAGGTCATTGTTAATGATGATACAGTATTCCCAGTTTTTCAGAAAT 828
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 806 TCAGAAGCCATGCAGAGGTCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAAT 865
Query 829 TTTGCAAGCGATCTCTACCACTGGATCCCAGAAAGAATTGGCTATATCTTAAAAAGAGGC 888
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 866 TTTGCAAGCGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTTAAAAAGAGGC 925
Query 889 GACACAACTGCATTCCTGATGAACACTATGTGCAAACTCTGCTAACAATGCGTGGCTTGG 948
|||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 926 GACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAATGCGTGGCTTGG 985
Query 949 ACAATGAAATGGAACGGAGAACAGTGACATACACGACATGGAACCTATCAGCaaaaaaaG 1008
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 986 AAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCAAAAAAAG 1045
Query 1009 CTGAAGCTAAATCTTGGCATCCTCTGACTTTCACATCTGACAATTCCGGGTCGGAGGAAA 1068
||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||
Sbjct 1046 CTGAAGCTAAATCTTGGCATCCTCTCACTTTCACATCTGACAATTGCGGACCAGAGGAAA 1105
Query 1069 TACAAGGAATAAAGAAAATCAACCATGTATATTATGAATCGGAGTATCGAACAGAATGGT 1128
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TAGAAGGAATAAAGAAAATCAACCATGTATATTATGAATCGGAGTATCGAACAGAATGGT 1165
Query 1129 GCAGGGCGAATTCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACTAGAGGAG 1188
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 GCAGAGCGAATTCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACTAGAGGAG 1225
Query 1189 CCGCAATGCGTCTTTTGAGTGAAGGATTATTAGAATCATCAATAGATACAACAACCTTTT 1248
||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 1226 CCGCAATGCGTCTTTTGAGTGAAGGATTAATAGAATCCTCTATAGATACAACAACCTTTT 1285
Query 1249 AGATGCAAAGAAAA---GGTAAGCACAAAGGTTTTATACAACTAAGAAAGAAGAAACCAA 1305
|||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1286 AGATACAAAAAAAAAAAGGTAAGCACAAAGGTTTTATAGAACTAAGAAAGAAGAAACCAT 1345
Query 1306 GATTGACGCCAGAAAAGaaaaaaaGTTAACTTAGAATATACAGGTGAA-GCATAAAAGAT 1364
||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| | |||
Sbjct 1346 GATTGACACCAGAAAAGAAAAAA-GTTAACTTAGAATATACAGGTGAAAGCATACA-GAT 1403
Query 1365 AGTACATTAATCGATCATATGACAGCAGTTTAGTACAAACTATACATCCTTCATGGAT 1422
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1404 AGTACATTAATCGATCATATGACAGTAGTTTGGTACAAACTATACATCCATCATGGAT 1461
Score = 80.5 bits (43), Expect = 4e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1 TCTCTCACATGTCAAATCCTTACGATTTCGATTTCTCCTGAAA 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TCTCTCACATGTCAAATCCTTACGATTTCGATTTCTCCTGAAA 47
> AT1G11940.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:4031574-4034078
REVERSE LENGTH=1478
Length=1478
Score = 791 bits (428), Expect = 0.0
Identities = 824/1009 (82%), Gaps = 52/1009 (5%)
Strand=Plus/Plus
Query 264 CTCTCCGTCGCGAGATCTC-GTATC-CCGC-TCGTTAAATACTCCGGCGATCGTCCCAAA 320
||||||||||||||||||| | | | |||| || ||||||||||| |||||||||||
Sbjct 298 CTCTCCGTCGCGAGATCTCAG-A-CACCGCTTC-ACAAATACTCCGGTGATCGTCCCAAG 354
Query 321 CTCGCGTTCCTTTTTC-TCGCTCGCCGTGATTTGCCTCTTGATTTTCTCTGGGATAGATT 379
||||| |||| ||||| | |||||||||||| | || ||||||||| | |||||||||||
Sbjct 355 CTCGCTTTCC-TTTTCTTAGCTCGCCGTGATCTCCCACTTGATTTTATGTGGGATAGATT 413
Query 380 CTTCAA--GAATGCAGATCA-GAGAAATTTCTCAATCTATATACATTCAATACCTGGTTT 436
|||||| || || ||||| | | ||||||||||| |||||||||||| ||||||||||
Sbjct 414 CTTCAAGGGAGTG--GATCATGCG-AATTTCTCAATTTATATACATTCAGTACCTGGTTT 470
Query 437 CGTATTCGATGAATCCTCCACAAGATCACAGT-TCTTCTACAATCGCCAATTGAAGAATA 495
||| ||| ||||| | ||| ||||||||| | ||||| |||||||||||||| ||||
Sbjct 471 CGTGTTCAATGAAGAAACTACACGATCACAGTAT-TTCTATAATCGCCAATTGAACAATA 529
Query 496 GCATCCAGGTAGTTTGGGGAGAATCAAGCATGATTGCAGCAGAAAGATTGTTGCTTGCAT 555
|||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 530 GCATTAAGGTAGTATGGGGAGAATCAAGCATGATTGAAGCAGAAAGATTGTTGCTTGCAT 589
Query 556 CTGCTTTGGAAGATC-CTTCGAATCAAAGATTTGTTCTTTTGTCTGATAGCTGTGTTCCT 614
||||||| || |||| || | |||||||||||||||||| | ||||| || |||| |||
Sbjct 590 CTGCTTTAGAGGATCACTCC-AATCAAAGATTTGTTCTTCTCTCTGACAGATGTGCTCCA 648
Query 615 TTATACGACTTTGGTTACATATACAGATATCT-AGTTTCTTCACCAAAGAGTTTTGTAGA 673
||||| |||||||| || ||||||| |||||| | | |||||||| | ||||||||| ||
Sbjct 649 TTATATGACTTTGGCTATATATACAAATATCTTA-TCTCTTCACCGAGGAGTTTTGTGGA 707
Query 674 CAGCTTCCTTGATA--AA-GATAAACGCTACACCATGAAAATGTTTCCTGTTATACG-GA 729
|| || ||| ||| || || | ||| |||| ||||||||| |||||| |||| ||
Sbjct 708 TAGTTTTCTTCATACTAAAGAGACACGGTACAGTGTGAAAATGTCTCCTGTCATACCTGA 767
Query 730 AAGAGAAATGGCGAAAAGGATCTCAGTGGATATCATTGATCAGAAGCCATGCAGAGGTCA 789
| |||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||
Sbjct 768 A-GAGAAATGGCGAAAAGGATCCCAGTGGATAGCTTTGATCAGAAGTCATGCAGAGGTCA 826
Query 790 TTGTTAATGATGATA-CAGTATTCCCAGTTTTTCAGAAATTTTGCAAGCGATCTCTACCA 848
|||| ||||||| || | ||||||||||||||| || |||| |||||| ||| || |||
Sbjct 827 TTGTAAATGATGGTATC-GTATTCCCAGTTTTTAAGGAATTCTGCAAGAGATGTCCACCT 885
Query 849 CT-GGATCCCAGAA-AGA-ATTGGCTATATCTTAAAAAGAGGCGACACAACTGCATTCCT 905
| || | ||| | || || || | | ||||||| ||| ||||| ||||||||| ||
Sbjct 886 TTAGG-TACCA-ATGAGGCAT-GGTTGTTTCTTAAACAGAAGCGACGCAACTGCATCCCC 942
Query 906 GATGAACACTATGTGCAAAC-TCTGCTAACAATGCGTGG-CTTGGACAATGAAATGGAAC 963
|||||||||||||||||||| | |||| || |||| || || | | | |||||||||||
Sbjct 943 GATGAACACTATGTGCAAACAT-TGCTTACGATGCAAGGACTAG-AGAGTGAAATGGAAC 1000
Query 964 GGAGAACAGTGACATACAC-GACATGGAACCTATCAGCaaaaaaaGCTGAAGCTAAATCT 1022
| ||||||||||||||||| | ||||||| | |||| | |||| |||||| ||||||
Sbjct 1001 GAAGAACAGTGACATACACTGT-ATGGAACGTTTCAGGTACAAAATATGAAGCCAAATCT 1059
Query 1023 TGGCATCCTC-TGACTTTCACATCTG-ACAATTCCGGGTCGGAGGAAATACAAGGAATAA 1080
|||||||| | | |||||||||| || | || ||||| | ||||||||| ||| |||||
Sbjct 1060 TGGCATCC-CGTCACTTTCACAT-TGGAAAACTCCGGCCCTGAGGAAATAAAAGAAATAA 1117
Query 1081 AGAAAATCA-ACCATGTATATTATGAATCGGAGTATCGAACAGAATGGTGCAGGGCGAAT 1139
||||||| | ||||||| ||||| || || || | |||||| |||||||| | |||| ||
Sbjct 1118 AGAAAAT-AGACCATGTCTATTACGAGTCTGAATCTCGAACGGAATGGTGTAAGGCGGAT 1176
Query 1140 TCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACTAGAGGA-GCCGCAATGCG 1198
|| ||||||||||| |||||||| ||||| ||||||||||| | | || || || |||||
Sbjct 1177 TCGAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAGTTCACGA-ATGAAGCTGCTATGCG 1235
Query 1199 TCTTT-TGAGTGAAGGATTATTAGAATCATCAATAGATACAACAACCTT 1246
| || ||||||||||| || ||| ||||||| | | |||| ||||||
Sbjct 1236 -CATTGTGAGTGAAGGACTAATAGGATCATCAGCA-A-ACAA-AACCTT 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5